Wall clock time and date at job start Tue Mar 31 2020 00:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47120 * 0.95714 * 3 2 1 5 5 O 1.42896 * 109.47506 * 120.96267 * 3 2 1 6 6 C 1.35674 * 116.99768 * 274.79713 * 5 3 2 7 7 C 1.39312 * 119.82035 * 185.10095 * 6 5 3 8 8 C 1.36437 * 120.18876 * 180.27133 * 7 6 5 9 9 C 1.40827 * 119.81080 * 0.02562 * 8 7 6 10 10 C 1.41218 * 120.18044 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00041 * 208.23319 * 10 9 8 12 12 C 1.39893 * 119.99783 * 28.23297 * 10 9 8 13 13 N 1.30884 * 119.99790 * 12.09421 * 12 10 9 14 14 Si 1.86795 * 120.00137 * 192.08618 * 12 10 9 15 15 H 1.48503 * 109.47066 * 89.99977 * 14 12 10 16 16 H 1.48496 * 109.47267 * 210.00078 * 14 12 10 17 17 H 1.48498 * 109.47178 * 330.00360 * 14 12 10 18 18 C 1.40836 * 119.64189 * 359.97438 * 9 8 7 19 19 C 1.36435 * 119.81063 * 0.02562 * 18 9 8 20 20 C 1.50702 * 109.47113 * 240.96220 * 3 2 1 21 21 C 1.38241 * 119.99808 * 279.72750 * 20 3 2 22 22 C 1.38231 * 119.99781 * 179.78605 * 21 20 3 23 23 C 1.38238 * 120.00510 * 0.44047 * 22 21 20 24 24 C 1.38243 * 119.99311 * 359.81179 * 23 22 21 25 25 C 1.38230 * 120.00304 * 359.97438 * 24 23 22 26 26 H 4.18737 * 15.03908 * 0.02562 * 4 2 1 27 27 H 1.08005 * 119.90638 * 0.27471 * 7 6 5 28 28 H 1.07997 * 120.09203 * 180.02562 * 8 7 6 29 29 H 0.97002 * 119.99861 * 180.02562 * 13 12 10 30 30 H 1.08003 * 120.09412 * 180.02562 * 18 9 8 31 31 H 1.08000 * 119.90445 * 179.97438 * 19 18 9 32 32 H 1.07999 * 119.99639 * 359.97438 * 21 20 3 33 33 H 1.08005 * 120.00186 * 180.27059 * 22 21 20 34 34 H 1.07994 * 120.00709 * 179.83257 * 23 22 21 35 35 H 1.07995 * 119.99424 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.00470 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0267 -0.0172 5 8 3.1221 0.6940 -1.1552 6 6 3.2324 -0.0229 -2.3018 7 6 3.7900 0.5647 -3.4352 8 6 3.8996 -0.1475 -4.5938 9 6 3.4465 -1.4801 -4.6420 10 6 3.5556 -2.2243 -5.8372 11 1 2.8530 -3.0175 -6.0454 12 6 4.5738 -1.9338 -6.7515 13 7 5.5596 -1.1458 -6.4046 14 14 4.5267 -2.6708 -8.4672 15 1 3.7890 -1.7586 -9.3777 16 1 5.9134 -2.8530 -8.9660 17 1 3.8400 -3.9867 -8.4220 18 6 2.8841 -2.0666 -3.4917 19 6 2.7819 -1.3406 -2.3411 20 6 3.1480 0.6905 1.2422 21 6 3.1871 2.0713 1.2982 22 6 3.6434 2.7041 2.4392 23 6 4.0693 1.9563 3.5211 24 6 4.0351 0.5755 3.4632 25 6 3.5746 -0.0573 2.3238 26 1 -1.0500 -0.0010 -0.0005 27 1 4.1366 1.5869 -3.3967 28 1 4.3324 0.3094 -5.4714 29 1 6.2655 -0.9441 -7.0387 30 1 2.5347 -3.0881 -3.5203 31 1 2.3504 -1.7887 -1.4582 32 1 2.8582 2.6555 0.4514 33 1 3.6698 3.7829 2.4846 34 1 4.4283 2.4507 4.4116 35 1 4.3682 -0.0087 4.3082 36 1 3.5475 -1.1360 2.2786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225265270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:05 Heat of formation + Delta-G solvation = 52.445858 kcal Electronic energy + Delta-G solvation = -19656.469615 eV Core-core repulsion = 16650.715754 eV Total energy + Delta-G solvation = -3005.753861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12148 -39.86882 -38.26431 -35.36684 -34.50056 -32.37325 -31.84230 -31.61630 -30.86924 -27.89609 -26.58842 -23.57484 -23.34668 -22.53874 -22.32618 -19.73236 -19.30770 -18.58246 -17.88808 -17.05038 -16.58979 -16.49128 -15.92550 -15.76444 -15.44215 -14.86211 -14.51361 -14.28369 -14.12888 -14.08190 -13.73987 -13.39474 -13.34255 -12.84637 -12.80256 -12.44694 -12.35297 -12.00686 -11.92162 -11.70948 -11.57424 -11.31096 -11.08072 -10.97510 -9.85867 -9.78990 -9.59619 -8.93460 -8.57288 -6.27491 0.29513 0.46941 0.91424 0.99153 1.40190 1.51211 1.53622 1.55082 1.78048 2.23536 2.65319 2.75248 2.85929 3.40639 3.67277 3.78790 3.92862 4.13146 4.17166 4.26489 4.29989 4.32987 4.60498 4.65578 4.82697 4.91785 5.00690 5.03280 5.12738 5.17946 5.27102 5.49415 5.51059 5.57504 5.60593 5.66547 5.84700 6.03725 6.05649 6.23613 6.52840 6.55841 6.74005 6.94385 7.03776 8.39813 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.032781 B = 0.003555 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.935357 B = 7874.704614 C = 8202.291094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.249 4.249 3 C 0.237 3.763 4 H 0.093 0.907 5 O -0.315 6.315 6 C 0.000 4.000 7 C -0.130 4.130 8 C -0.145 4.145 9 C 0.058 3.942 10 C -0.499 4.499 11 H 0.076 0.924 12 C 0.031 3.969 13 N -0.837 5.837 14 Si 0.986 3.014 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.259 1.259 18 C -0.203 4.203 19 C -0.162 4.162 20 C -0.100 4.100 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.257 0.743 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.287 0.713 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 3.798 15.596 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.249 4.249 3 C 0.181 3.819 4 H 0.110 0.890 5 O -0.230 6.230 6 C -0.044 4.044 7 C -0.149 4.149 8 C -0.164 4.164 9 C 0.056 3.944 10 C -0.529 4.529 11 H 0.094 0.906 12 C -0.182 4.182 13 N -0.464 5.464 14 Si 0.807 3.193 15 H -0.188 1.188 16 H -0.194 1.194 17 H -0.183 1.183 18 C -0.223 4.223 19 C -0.181 4.181 20 C -0.100 4.100 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.134 4.134 26 H 0.273 0.727 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.162 0.838 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.514 4.087 15.542 16.450 hybrid contribution -0.116 -0.485 -1.075 1.185 sum -3.630 3.602 14.467 15.344 Atomic orbital electron populations 1.25834 0.96648 0.98005 0.96956 1.23696 0.95227 1.02820 1.03160 1.17687 0.83996 0.96564 0.83651 0.88998 1.85972 1.82230 1.38385 1.16462 1.18698 1.06937 0.92114 0.86629 1.20011 1.03269 0.99754 0.91889 1.20938 1.04268 0.94377 0.96836 1.17949 0.91364 0.91993 0.93088 1.19720 1.12962 1.17073 1.03126 0.90604 1.26734 0.93226 0.94356 1.03879 1.69868 1.08550 1.30855 1.37169 0.85149 0.78520 0.79382 0.76296 1.18757 1.19385 1.18279 1.20829 1.09334 0.99173 0.92932 1.20616 1.04772 0.93934 0.98777 1.19513 1.01980 0.94763 0.93769 1.21094 0.99113 0.93861 0.98602 1.21457 0.98861 1.01287 0.92875 1.21609 0.98277 0.94161 0.99127 1.21466 0.99106 0.95354 0.97915 1.21208 0.98453 1.00615 0.93094 0.72678 0.87140 0.86861 0.90287 0.87579 0.86277 0.87031 0.83750 0.82725 0.82757 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 19.25 74.32 1.43 -2.92 16 2 C -0.25 -8.30 11.93 31.13 0.37 -7.93 16 3 C 0.24 8.32 2.32 28.04 0.07 8.38 16 4 H 0.09 3.17 6.13 -2.39 -0.01 3.16 16 5 O -0.31 -13.36 9.07 -89.91 -0.82 -14.17 16 6 C 0.00 -0.01 6.61 22.79 0.15 0.14 16 7 C -0.13 -6.55 9.92 22.11 0.22 -6.33 16 8 C -0.14 -7.89 8.61 22.48 0.19 -7.70 16 9 C 0.06 3.22 5.55 -21.28 -0.12 3.10 16 10 C -0.50 -27.33 9.05 23.40 0.21 -27.12 16 11 H 0.08 3.99 7.87 -2.91 -0.02 3.97 16 12 C 0.03 1.59 5.23 85.23 0.45 2.03 16 13 N -0.84 -44.65 10.87 21.82 0.24 -44.42 16 14 Si 0.99 38.87 29.58 68.60 2.03 40.90 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 18 C -0.20 -10.26 9.74 22.48 0.22 -10.04 16 19 C -0.16 -7.52 8.63 22.11 0.19 -7.33 16 20 C -0.10 -3.02 4.94 -19.86 -0.10 -3.11 16 21 C -0.11 -3.11 9.35 22.27 0.21 -2.90 16 22 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 23 C -0.11 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.12 -2.29 10.05 22.27 0.22 -2.06 16 25 C -0.12 -2.81 9.67 22.27 0.22 -2.60 16 26 H 0.26 4.45 7.80 -4.42 -0.03 4.42 16 27 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 28 H 0.11 6.39 6.22 -2.91 -0.02 6.37 16 29 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 30 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.12 4.84 5.65 -2.91 -0.02 4.83 16 32 H 0.11 3.44 7.77 -2.91 -0.02 3.42 16 33 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.14 2.83 8.04 -2.91 -0.02 2.81 16 Total: -1.00 -65.27 319.84 6.91 -58.36 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 1.08 Total: 30.08 kcal Atomic # 6 Polarization: -75.13 SS G_CDS: 4.38 Total: -70.75 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.24 Total: -44.42 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.82 Total: -14.17 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -65.27 6.91 -58.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225265270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.804 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds