Wall clock time and date at job start Tue Mar 31 2020 00:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46858 * 156.60993 * 3 2 1 5 5 O 1.42893 * 109.47007 * 36.60190 * 3 2 1 6 6 C 1.35645 * 116.99662 * 84.03815 * 5 3 2 7 7 C 1.38442 * 120.26963 * 2.35930 * 6 5 3 8 8 C 1.38302 * 120.05460 * 179.75008 * 7 6 5 9 9 C 1.38821 * 120.59017 * 0.56028 * 8 7 6 10 10 C 1.36494 * 120.53531 * 359.69816 * 9 8 7 11 11 C 1.40724 * 119.93016 * 0.02562 * 10 9 8 12 12 C 1.41150 * 120.28770 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00143 * 150.37743 * 12 11 10 14 14 C 1.39939 * 120.00026 * 330.37192 * 12 11 10 15 15 N 1.30855 * 120.00326 * 349.40501 * 14 12 11 16 16 Si 1.86807 * 119.99888 * 169.39829 * 14 12 11 17 17 H 1.48511 * 109.46715 * 60.00324 * 16 14 12 18 18 H 1.48498 * 109.47186 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47396 * 300.00603 * 16 14 12 20 20 C 1.50701 * 109.46725 * 276.60462 * 3 2 1 21 21 C 1.38237 * 119.99856 * 84.72979 * 20 3 2 22 22 C 1.38236 * 119.99534 * 179.80937 * 21 20 3 23 23 C 1.38239 * 120.00473 * 0.39495 * 22 21 20 24 24 C 1.38242 * 119.99678 * 359.85740 * 23 22 21 25 25 C 1.38230 * 119.99976 * 265.00038 * 20 3 2 26 26 H 4.18736 * 15.03850 * 359.97438 * 4 2 1 27 27 H 1.08004 * 119.97061 * 0.03193 * 7 6 5 28 28 H 1.07994 * 119.70431 * 180.28008 * 8 7 6 29 29 H 1.08002 * 119.73515 * 179.71765 * 9 8 7 30 30 H 1.08002 * 120.03151 * 179.97438 * 10 9 8 31 31 H 0.97000 * 120.00725 * 179.97438 * 15 14 12 32 32 H 1.07994 * 120.00364 * 359.97438 * 21 20 3 33 33 H 1.08003 * 119.99705 * 180.23287 * 22 21 20 34 34 H 1.07998 * 120.00016 * 179.83749 * 23 22 21 35 35 H 1.07999 * 119.99580 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.00323 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0089 0.9440 -0.4080 5 8 3.1228 -1.0807 -0.8033 6 6 3.2096 -0.8635 -2.1394 7 6 2.8920 0.3764 -2.6670 8 6 2.9870 0.5944 -4.0294 9 6 3.3887 -0.4251 -4.8817 10 6 3.7025 -1.6583 -4.3881 11 6 3.6191 -1.9030 -3.0048 12 6 3.9424 -3.1754 -2.4861 13 1 4.3417 -3.2656 -1.4867 14 6 3.7454 -4.3199 -3.2669 15 7 3.0749 -4.2399 -4.3877 16 14 4.4398 -5.9619 -2.7090 17 1 3.8592 -6.3226 -1.3906 18 1 4.0953 -7.0089 -3.7042 19 1 5.9163 -5.8597 -2.5883 20 6 3.1484 -0.1625 1.4114 21 6 3.2756 -1.4259 1.9580 22 6 3.7401 -1.5757 3.2514 23 6 4.0697 -0.4619 4.0009 24 6 3.9375 0.8017 3.4560 25 6 3.4766 0.9513 2.1614 26 1 -1.0499 -0.0011 -0.0001 27 1 2.5741 1.1754 -2.0135 28 1 2.7422 1.5652 -4.4344 29 1 3.4537 -0.2409 -5.9439 30 1 4.0137 -2.4458 -5.0586 31 1 2.9386 -5.0332 -4.9291 32 1 3.0147 -2.2958 1.3738 33 1 3.8431 -2.5629 3.6772 34 1 4.4301 -0.5789 5.0123 35 1 4.1945 1.6719 4.0418 36 1 3.3734 1.9385 1.7357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:09 Heat of formation + Delta-G solvation = 68.261081 kcal Electronic energy + Delta-G solvation = -20218.446836 eV Core-core repulsion = 17213.378775 eV Total energy + Delta-G solvation = -3005.068061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62110 -38.41224 -36.31308 -33.55650 -33.18435 -31.15144 -30.77310 -29.68350 -28.58319 -26.36057 -25.07390 -22.48605 -21.81041 -20.82216 -20.61315 -18.19865 -17.54215 -16.80244 -16.49436 -15.44190 -15.06363 -15.03091 -14.52805 -14.21899 -14.04064 -13.32812 -13.22789 -12.90500 -12.63967 -12.45625 -12.12623 -11.78605 -11.34909 -11.22779 -11.05972 -10.97456 -10.85850 -10.52750 -10.30543 -10.15339 -9.91714 -9.69731 -9.34945 -9.16980 -8.79780 -8.68350 -7.43664 -7.01285 -6.63332 -4.24736 1.39705 1.53760 2.77761 2.92635 3.02406 3.10967 3.13308 3.14829 3.23506 3.87866 4.00263 4.27200 4.68979 4.72553 4.98595 5.06007 5.16410 5.26605 5.50185 5.63387 5.65981 5.75899 6.01734 6.09273 6.16902 6.19696 6.30622 6.45268 6.53011 6.63660 6.74748 6.94160 7.09552 7.13843 7.30579 7.37433 7.72426 7.78302 7.90015 8.06409 8.22639 8.38629 8.71763 8.89129 9.05906 10.30014 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.006136 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.219804 B = 4562.316647 C = 5832.377047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.234 3.766 4 H 0.094 0.906 5 O -0.284 6.284 6 C 0.010 3.990 7 C -0.176 4.176 8 C -0.208 4.208 9 C -0.128 4.128 10 C -0.138 4.138 11 C 0.102 3.898 12 C -0.447 4.447 13 H 0.080 0.920 14 C 0.072 3.928 15 N -0.807 5.807 16 Si 0.910 3.090 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.074 4.074 21 C -0.082 4.082 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.107 4.107 26 H 0.217 0.783 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.279 0.721 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 5.838 10.822 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.177 3.823 4 H 0.112 0.888 5 O -0.199 6.199 6 C -0.034 4.034 7 C -0.195 4.195 8 C -0.228 4.228 9 C -0.146 4.146 10 C -0.157 4.157 11 C 0.099 3.901 12 C -0.478 4.478 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.433 5.433 16 Si 0.735 3.265 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.074 4.074 21 C -0.100 4.100 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.125 4.125 26 H 0.233 0.767 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.143 0.857 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.293 5.494 10.726 12.055 hybrid contribution -0.198 -0.512 0.039 0.551 sum -0.491 4.982 10.765 11.872 Atomic orbital electron populations 1.24822 0.95733 0.99990 1.00188 1.23510 0.94657 1.00677 1.00415 1.17570 0.83179 0.92833 0.88722 0.88847 1.86116 1.80805 1.36254 1.16695 1.19214 1.07334 0.95453 0.81371 1.20591 1.07593 0.95380 0.95957 1.20144 1.11715 0.98164 0.92774 1.20418 1.02491 0.94337 0.97402 1.20924 1.03975 0.95680 0.95140 1.17036 0.91670 0.91035 0.90354 1.19352 1.37231 0.90127 1.01062 0.90200 1.25853 0.93130 1.01150 0.94244 1.69788 1.30173 1.31420 1.11962 0.86333 0.80357 0.80518 0.79287 1.19076 1.20452 1.18922 1.19491 1.00027 0.94162 0.93738 1.21175 0.96549 0.97578 0.94692 1.21184 0.99781 0.98773 0.94499 1.21147 1.00208 0.92787 0.99707 1.21013 1.00768 0.97360 0.95282 1.20919 0.99112 0.97911 0.94572 0.76654 0.88718 0.89284 0.89244 0.85680 0.91014 0.84842 0.85968 0.86284 0.86071 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 19.25 29.55 0.57 -2.56 16 2 C -0.19 -3.59 12.31 -37.12 -0.46 -4.04 16 3 C 0.23 4.42 2.34 -30.67 -0.07 4.35 16 4 H 0.09 1.66 5.90 -51.93 -0.31 1.36 16 5 O -0.28 -6.60 8.28 -18.64 -0.15 -6.75 16 6 C 0.01 0.25 6.60 -38.34 -0.25 0.00 16 7 C -0.18 -4.06 8.81 -39.48 -0.35 -4.41 16 8 C -0.21 -4.74 10.04 -39.34 -0.39 -5.13 16 9 C -0.13 -3.04 9.97 -39.99 -0.40 -3.44 16 10 C -0.14 -3.61 8.60 -39.27 -0.34 -3.95 16 11 C 0.10 2.77 5.55 -106.68 -0.59 2.18 16 12 C -0.45 -12.18 8.68 -37.84 -0.33 -12.50 16 13 H 0.08 2.14 7.71 -52.48 -0.40 1.74 16 14 C 0.07 1.84 5.25 -17.33 -0.09 1.75 16 15 N -0.81 -21.23 10.89 55.55 0.60 -20.63 16 16 Si 0.91 19.27 29.57 -169.99 -5.03 14.24 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 20 C -0.07 -1.23 4.96 -104.62 -0.52 -1.75 16 21 C -0.08 -1.34 9.35 -39.58 -0.37 -1.71 16 22 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 24 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 25 C -0.11 -1.47 9.68 -39.58 -0.38 -1.85 16 26 H 0.22 2.60 7.80 -54.09 -0.42 2.18 16 27 H 0.09 1.93 5.74 -52.48 -0.30 1.63 16 28 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.13 3.36 6.27 -52.49 -0.33 3.03 16 31 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 32 H 0.13 2.38 7.64 -52.49 -0.40 1.97 16 33 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -29.67 319.30 -8.77 -38.44 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.84 Total: 8.74 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: -5.17 Total: -38.86 kcal Atomic # 7 Polarization: -21.23 SS G_CDS: 0.60 Total: -20.63 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.15 Total: -6.75 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.67 -8.77 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.698 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds