Wall clock time and date at job start Tue Mar 31 2020 00:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47266 * 304.24794 * 3 2 1 5 5 O 1.42890 * 109.46960 * 64.25250 * 3 2 1 6 6 C 1.35642 * 116.99874 * 276.63061 * 5 3 2 7 7 C 1.38444 * 120.26936 * 5.34877 * 6 5 3 8 8 C 1.38305 * 120.05694 * 179.74512 * 7 6 5 9 9 C 1.38821 * 120.58730 * 0.56427 * 8 7 6 10 10 C 1.36490 * 120.54295 * 359.69228 * 9 8 7 11 11 C 1.40734 * 119.92566 * 0.02562 * 10 9 8 12 12 C 1.41146 * 120.29092 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00081 * 206.66807 * 12 11 10 14 14 C 1.39933 * 119.99915 * 26.65847 * 12 11 10 15 15 N 1.30868 * 119.99913 * 12.72263 * 14 12 11 16 16 Si 1.86804 * 120.00162 * 192.71836 * 14 12 11 17 17 H 1.48495 * 109.47134 * 90.00762 * 16 14 12 18 18 H 1.48506 * 109.47129 * 210.00727 * 16 14 12 19 19 H 1.48500 * 109.46797 * 330.00211 * 16 14 12 20 20 C 1.50703 * 109.46656 * 184.25031 * 3 2 1 21 21 C 1.38235 * 119.99890 * 279.72177 * 20 3 2 22 22 C 1.38233 * 119.99756 * 179.79156 * 21 20 3 23 23 C 1.38235 * 120.00307 * 0.44157 * 22 21 20 24 24 C 1.38241 * 119.99842 * 359.81782 * 23 22 21 25 25 C 1.38234 * 119.99863 * 359.96997 * 24 23 22 26 26 H 4.18742 * 15.03896 * 359.97438 * 4 2 1 27 27 H 1.08004 * 119.96755 * 0.02706 * 7 6 5 28 28 H 1.07996 * 119.70513 * 180.27721 * 8 7 6 29 29 H 1.08003 * 119.73186 * 179.71977 * 9 8 7 30 30 H 1.07994 * 120.04263 * 180.02562 * 10 9 8 31 31 H 0.97006 * 120.00029 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.00001 * 0.02562 * 21 20 3 33 33 H 1.08003 * 119.99919 * 180.27796 * 22 21 20 34 34 H 1.07999 * 120.00658 * 179.83339 * 23 22 21 35 35 H 1.07997 * 120.00103 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.00156 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.5775 0.8495 5 8 3.1226 -0.5844 -1.2134 6 6 3.1969 -1.9380 -1.2568 7 6 2.7183 -2.6973 -0.2026 8 6 2.7915 -4.0775 -0.2537 9 6 3.3532 -4.7149 -1.3515 10 6 3.8372 -3.9900 -2.4019 11 6 3.7688 -2.5846 -2.3758 12 6 4.2664 -1.8274 -3.4580 13 1 4.6147 -0.8180 -3.2959 14 6 4.3088 -2.3846 -4.7409 15 7 3.6680 -3.4977 -4.9923 16 14 5.2797 -1.5396 -6.0947 17 1 6.6739 -2.0508 -6.0968 18 1 4.6469 -1.8223 -7.4081 19 1 5.2901 -0.0741 -5.8555 20 6 3.1477 1.4179 0.1053 21 6 3.1870 2.2224 -1.0181 22 6 3.6431 3.5237 -0.9207 23 6 4.0683 4.0176 0.2984 24 6 4.0340 3.2114 1.4208 25 6 3.5738 1.9114 1.3242 26 1 -1.0500 0.0000 0.0008 27 1 2.2834 -2.2115 0.6584 28 1 2.4124 -4.6643 0.5698 29 1 3.4074 -5.7933 -1.3749 30 1 4.2722 -4.4943 -3.2520 31 1 3.6970 -3.8838 -5.8818 32 1 2.8580 1.8354 -1.9712 33 1 3.6696 4.1537 -1.7975 34 1 4.4272 5.0334 0.3740 35 1 4.3666 3.5971 2.3731 36 1 3.5466 1.2817 2.2012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:11 Heat of formation + Delta-G solvation = 67.275228 kcal Electronic energy + Delta-G solvation = -20214.660947 eV Core-core repulsion = 17209.550136 eV Total energy + Delta-G solvation = -3005.110811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61414 -38.40713 -36.30880 -33.57731 -33.19122 -31.16421 -30.77228 -29.67445 -28.56587 -26.35060 -25.07903 -22.48652 -21.81810 -20.78741 -20.61679 -18.22651 -17.50654 -16.79638 -16.50316 -15.45379 -15.11620 -15.01213 -14.50798 -14.20315 -14.05012 -13.31769 -13.22512 -12.87107 -12.63601 -12.50220 -12.04841 -11.82060 -11.36220 -11.22266 -11.07103 -10.96653 -10.86888 -10.48887 -10.31663 -10.15712 -9.91584 -9.68176 -9.37113 -9.17980 -8.79670 -8.68800 -7.44537 -7.02947 -6.64685 -4.24590 1.39511 1.53914 2.76848 2.96996 2.98055 3.10961 3.11706 3.15803 3.23098 3.87820 3.99191 4.28004 4.67607 4.72967 4.98037 5.06120 5.16710 5.26534 5.51593 5.64547 5.66383 5.75969 6.01880 6.10461 6.15533 6.19682 6.31961 6.46264 6.53282 6.63211 6.74737 6.95639 7.09490 7.13417 7.31215 7.39214 7.73970 7.77963 7.88261 8.07879 8.23250 8.40056 8.71903 8.88617 9.06345 10.26928 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.006211 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.014593 B = 4506.851828 C = 5858.126448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.192 4.192 3 C 0.236 3.764 4 H 0.092 0.908 5 O -0.284 6.284 6 C 0.006 3.994 7 C -0.173 4.173 8 C -0.212 4.212 9 C -0.127 4.127 10 C -0.142 4.142 11 C 0.100 3.900 12 C -0.444 4.444 13 H 0.081 0.919 14 C 0.071 3.929 15 N -0.803 5.803 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.262 1.262 20 C -0.074 4.074 21 C -0.081 4.081 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.106 4.106 26 H 0.217 0.783 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.279 0.721 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 9.541 7.752 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.178 3.822 4 H 0.110 0.890 5 O -0.199 6.199 6 C -0.038 4.038 7 C -0.192 4.192 8 C -0.231 4.231 9 C -0.145 4.145 10 C -0.161 4.161 11 C 0.098 3.902 12 C -0.474 4.474 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.429 5.429 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.074 4.074 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.124 4.124 26 H 0.233 0.767 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.811 9.517 7.385 12.074 hybrid contribution -0.060 0.108 -0.451 0.467 sum -0.871 9.626 6.935 11.895 Atomic orbital electron populations 1.24823 0.95730 1.00599 0.99669 1.23545 0.94699 1.00203 1.00808 1.17567 0.83184 0.91202 0.90200 0.89050 1.86121 1.81036 1.19601 1.33099 1.19214 1.05791 0.80145 0.98613 1.20602 1.05916 0.94837 0.97840 1.20138 1.10335 0.93201 0.99473 1.20415 1.01442 0.97684 0.94981 1.20968 1.03663 0.93113 0.98388 1.17062 0.91134 0.91816 0.90236 1.19425 1.35803 1.00730 0.91475 0.90063 1.25883 0.93862 0.94682 1.00041 1.69816 1.32522 1.17788 1.22801 0.86277 0.80190 0.80717 0.79349 1.19377 1.20391 1.18593 1.19485 0.99892 0.93808 0.94231 1.21150 0.96904 0.93029 0.98837 1.21176 0.99646 0.95722 0.97720 1.21145 0.99984 0.99633 0.93035 1.21016 1.00841 0.93975 0.98591 1.20940 0.98685 0.96067 0.96736 0.76652 0.88759 0.89342 0.89289 0.85457 0.91031 0.85011 0.85981 0.86277 0.86057 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 19.25 29.55 0.57 -2.52 16 2 C -0.19 -3.54 11.78 -37.12 -0.44 -3.98 16 3 C 0.24 4.44 2.33 -30.67 -0.07 4.37 16 4 H 0.09 1.63 6.28 -51.93 -0.33 1.31 16 5 O -0.28 -6.61 8.41 -18.63 -0.16 -6.77 16 6 C 0.01 0.16 6.61 -38.33 -0.25 -0.10 16 7 C -0.17 -4.01 8.67 -39.48 -0.34 -4.35 16 8 C -0.21 -4.84 10.04 -39.34 -0.39 -5.24 16 9 C -0.13 -3.02 9.97 -40.00 -0.40 -3.42 16 10 C -0.14 -3.73 8.62 -39.27 -0.34 -4.06 16 11 C 0.10 2.73 5.58 -106.68 -0.60 2.14 16 12 C -0.44 -12.09 8.72 -37.84 -0.33 -12.42 16 13 H 0.08 2.19 7.66 -52.48 -0.40 1.79 16 14 C 0.07 1.82 5.23 -17.33 -0.09 1.73 16 15 N -0.80 -21.04 10.80 55.55 0.60 -20.44 16 16 Si 0.91 19.21 29.58 -169.99 -5.03 14.18 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 20 C -0.07 -1.23 4.94 -104.62 -0.52 -1.75 16 21 C -0.08 -1.33 9.35 -39.58 -0.37 -1.70 16 22 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 24 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 25 C -0.11 -1.47 9.67 -39.58 -0.38 -1.85 16 26 H 0.22 2.54 7.80 -54.09 -0.42 2.12 16 27 H 0.09 1.95 5.66 -52.48 -0.30 1.66 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 30 H 0.13 3.42 6.12 -52.49 -0.32 3.10 16 31 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 32 H 0.13 2.32 7.77 -52.49 -0.41 1.91 16 33 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -29.66 318.90 -8.77 -38.43 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -3.85 Total: 8.74 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: -5.14 Total: -38.95 kcal Atomic # 7 Polarization: -21.04 SS G_CDS: 0.60 Total: -20.44 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.16 Total: -6.77 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.66 -8.77 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.702 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds