Wall clock time and date at job start Tue Mar 31 2020 00:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47266 * 304.24794 * 3 2 1 5 5 O 1.42890 * 109.46960 * 64.25250 * 3 2 1 6 6 C 1.35642 * 116.99874 * 276.63061 * 5 3 2 7 7 C 1.38444 * 120.26936 * 5.34877 * 6 5 3 8 8 C 1.38305 * 120.05694 * 179.74512 * 7 6 5 9 9 C 1.38821 * 120.58730 * 0.56427 * 8 7 6 10 10 C 1.36490 * 120.54295 * 359.69228 * 9 8 7 11 11 C 1.40734 * 119.92566 * 0.02562 * 10 9 8 12 12 C 1.41146 * 120.29092 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00081 * 206.66807 * 12 11 10 14 14 C 1.39933 * 119.99915 * 26.65847 * 12 11 10 15 15 N 1.30868 * 119.99913 * 12.72263 * 14 12 11 16 16 Si 1.86804 * 120.00162 * 192.71836 * 14 12 11 17 17 H 1.48495 * 109.47134 * 90.00762 * 16 14 12 18 18 H 1.48506 * 109.47129 * 210.00727 * 16 14 12 19 19 H 1.48500 * 109.46797 * 330.00211 * 16 14 12 20 20 C 1.50703 * 109.46656 * 184.25031 * 3 2 1 21 21 C 1.38235 * 119.99890 * 279.72177 * 20 3 2 22 22 C 1.38233 * 119.99756 * 179.79156 * 21 20 3 23 23 C 1.38235 * 120.00307 * 0.44157 * 22 21 20 24 24 C 1.38241 * 119.99842 * 359.81782 * 23 22 21 25 25 C 1.38234 * 119.99863 * 359.96997 * 24 23 22 26 26 H 4.18742 * 15.03896 * 359.97438 * 4 2 1 27 27 H 1.08004 * 119.96755 * 0.02706 * 7 6 5 28 28 H 1.07996 * 119.70513 * 180.27721 * 8 7 6 29 29 H 1.08003 * 119.73186 * 179.71977 * 9 8 7 30 30 H 1.07994 * 120.04263 * 180.02562 * 10 9 8 31 31 H 0.97006 * 120.00029 * 179.97438 * 15 14 12 32 32 H 1.07997 * 120.00001 * 0.02562 * 21 20 3 33 33 H 1.08003 * 119.99919 * 180.27796 * 22 21 20 34 34 H 1.07999 * 120.00658 * 179.83339 * 23 22 21 35 35 H 1.07997 * 120.00103 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.00156 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0097 -0.5775 0.8495 5 8 3.1226 -0.5844 -1.2134 6 6 3.1969 -1.9380 -1.2568 7 6 2.7183 -2.6973 -0.2026 8 6 2.7915 -4.0775 -0.2537 9 6 3.3532 -4.7149 -1.3515 10 6 3.8372 -3.9900 -2.4019 11 6 3.7688 -2.5846 -2.3758 12 6 4.2664 -1.8274 -3.4580 13 1 4.6147 -0.8180 -3.2959 14 6 4.3088 -2.3846 -4.7409 15 7 3.6680 -3.4977 -4.9923 16 14 5.2797 -1.5396 -6.0947 17 1 6.6739 -2.0508 -6.0968 18 1 4.6469 -1.8223 -7.4081 19 1 5.2901 -0.0741 -5.8555 20 6 3.1477 1.4179 0.1053 21 6 3.1870 2.2224 -1.0181 22 6 3.6431 3.5237 -0.9207 23 6 4.0683 4.0176 0.2984 24 6 4.0340 3.2114 1.4208 25 6 3.5738 1.9114 1.3242 26 1 -1.0500 0.0000 0.0008 27 1 2.2834 -2.2115 0.6584 28 1 2.4124 -4.6643 0.5698 29 1 3.4074 -5.7933 -1.3749 30 1 4.2722 -4.4943 -3.2520 31 1 3.6970 -3.8838 -5.8818 32 1 2.8580 1.8354 -1.9712 33 1 3.6696 4.1537 -1.7975 34 1 4.4272 5.0334 0.3740 35 1 4.3666 3.5971 2.3731 36 1 3.5466 1.2817 2.2012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:10 Heat of formation + Delta-G solvation = 53.462319 kcal Electronic energy + Delta-G solvation = -20215.259920 eV Core-core repulsion = 17209.550136 eV Total energy + Delta-G solvation = -3005.709784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06127 -39.83813 -38.03525 -35.50277 -34.58331 -32.37581 -31.83482 -31.57684 -30.39492 -27.73426 -26.99690 -23.59466 -23.27585 -22.42827 -22.30706 -19.64095 -19.36131 -18.31165 -17.91707 -17.07103 -16.48903 -16.40472 -16.00872 -15.87367 -15.41977 -14.84893 -14.54387 -14.33156 -14.27338 -14.01839 -13.48962 -13.42952 -13.11174 -12.84820 -12.77963 -12.37263 -12.16876 -12.03614 -11.87562 -11.82872 -11.54992 -11.32308 -11.09474 -11.06572 -9.85427 -9.77944 -9.39108 -8.92983 -8.55356 -6.26126 0.30753 0.47354 0.91248 1.06261 1.35958 1.48332 1.50093 1.58118 1.78093 2.22048 2.72483 2.74782 2.91049 3.40523 3.66127 3.82779 3.94595 4.14914 4.19862 4.27621 4.33102 4.51023 4.60762 4.63024 4.71405 4.91547 5.01213 5.06568 5.13177 5.18983 5.41398 5.42980 5.51234 5.57933 5.63775 5.84621 5.87851 6.06496 6.13889 6.28961 6.49157 6.56262 6.77339 6.91169 7.16987 8.37945 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.006211 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.014593 B = 4506.851828 C = 5858.126448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.246 4.246 3 C 0.233 3.767 4 H 0.095 0.905 5 O -0.307 6.307 6 C -0.001 4.001 7 C -0.177 4.177 8 C -0.203 4.203 9 C -0.134 4.134 10 C -0.161 4.161 11 C 0.061 3.939 12 C -0.480 4.480 13 H 0.066 0.934 14 C 0.032 3.968 15 N -0.833 5.833 16 Si 0.980 3.020 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.264 1.264 20 C -0.098 4.098 21 C -0.111 4.111 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.257 0.743 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.287 0.713 32 H 0.101 0.899 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 10.942 9.399 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.246 4.246 3 C 0.176 3.824 4 H 0.112 0.888 5 O -0.222 6.222 6 C -0.045 4.045 7 C -0.196 4.196 8 C -0.223 4.223 9 C -0.152 4.152 10 C -0.181 4.181 11 C 0.058 3.942 12 C -0.510 4.510 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.460 5.460 16 Si 0.801 3.199 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.189 1.189 20 C -0.098 4.098 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.131 4.131 26 H 0.273 0.727 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.021 10.914 9.054 14.217 hybrid contribution -0.103 -0.270 -0.791 0.842 sum -1.124 10.644 8.263 13.521 Atomic orbital electron populations 1.25810 0.96639 0.98428 0.97143 1.23796 0.95347 1.02335 1.03111 1.17774 0.83965 0.92333 0.88315 0.88758 1.86082 1.81401 1.18717 1.35997 1.19410 1.05163 0.81387 0.98566 1.20902 1.05471 0.95181 0.98017 1.20593 1.08490 0.93365 0.99810 1.20714 1.00923 0.99073 0.94523 1.20954 1.04990 0.93112 0.99069 1.17455 0.92509 0.92721 0.91494 1.19505 1.38070 1.00524 0.92938 0.91594 1.26673 0.94328 0.95340 1.01775 1.69862 1.33386 1.18988 1.23793 0.85239 0.78958 0.79230 0.76501 1.18325 1.18985 1.18851 1.19517 1.01858 0.92807 0.95645 1.21068 0.99289 0.94826 0.97774 1.21421 0.99093 0.94581 0.99551 1.21594 0.98271 1.01212 0.91980 1.21482 0.99000 0.92883 1.00246 1.21209 0.98353 0.97417 0.96092 0.72687 0.86384 0.85742 0.86616 0.86951 0.90277 0.88119 0.84209 0.82569 0.82331 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 19.25 74.32 1.43 -3.65 16 2 C -0.25 -9.12 11.78 31.13 0.37 -8.75 16 3 C 0.23 9.06 2.33 28.05 0.07 9.13 16 4 H 0.09 3.45 6.28 -2.39 -0.01 3.43 16 5 O -0.31 -15.13 8.41 -89.56 -0.75 -15.89 16 6 C 0.00 -0.06 6.61 23.08 0.15 0.10 16 7 C -0.18 -8.18 8.67 22.33 0.19 -7.98 16 8 C -0.20 -9.02 10.04 22.43 0.23 -8.80 16 9 C -0.13 -6.37 9.97 22.00 0.22 -6.15 16 10 C -0.16 -8.81 8.62 22.47 0.19 -8.62 16 11 C 0.06 3.48 5.58 -21.20 -0.12 3.36 16 12 C -0.48 -27.75 8.72 23.39 0.20 -27.55 16 13 H 0.07 3.85 7.66 -2.91 -0.02 3.82 16 14 C 0.03 1.69 5.23 85.25 0.45 2.13 16 15 N -0.83 -45.30 10.80 21.83 0.24 -45.06 16 16 Si 0.98 40.66 29.58 68.60 2.03 42.69 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 C -0.10 -3.34 4.94 -19.86 -0.10 -3.44 16 21 C -0.11 -3.82 9.35 22.27 0.21 -3.61 16 22 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 23 C -0.11 -2.35 10.05 22.27 0.22 -2.13 16 24 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 25 C -0.11 -2.97 9.67 22.27 0.22 -2.76 16 26 H 0.26 5.25 7.80 -4.42 -0.03 5.22 16 27 H 0.12 4.80 5.66 -2.91 -0.02 4.78 16 28 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.11 6.35 6.12 -2.91 -0.02 6.33 16 31 H 0.29 14.07 8.30 -92.70 -0.77 13.30 16 32 H 0.10 3.94 7.77 -2.91 -0.02 3.92 16 33 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.14 3.06 8.04 -2.91 -0.02 3.04 16 Total: -1.00 -68.41 318.90 6.97 -61.44 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 1.08 Total: 30.93 kcal Atomic # 6 Polarization: -78.48 SS G_CDS: 4.38 Total: -74.11 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.24 Total: -45.06 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.75 Total: -15.89 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -68.41 6.97 -61.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.903 kcal (2) G-P(sol) polarization free energy of solvation -68.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds