Wall clock time and date at job start Mon Mar 30 2020 23:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39629 * 120.08404 * 90.54348 * 3 2 1 5 5 C 1.38035 * 120.10332 * 180.02562 * 4 3 2 6 6 C 1.38139 * 120.27565 * 0.02562 * 5 4 3 7 7 C 1.39420 * 120.16266 * 0.26168 * 6 5 4 8 8 C 1.48376 * 120.05202 * 179.69886 * 7 6 5 9 9 C 1.39374 * 120.06299 * 179.71956 * 8 7 6 10 10 C 1.37906 * 119.93270 * 179.71888 * 9 8 7 11 11 C 1.38838 * 120.06356 * 0.57932 * 10 9 8 12 12 O 1.35869 * 119.93286 * 179.69741 * 11 10 9 13 13 C 1.42902 * 117.00317 * 359.97438 * 12 11 10 14 14 C 1.50699 * 109.47379 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99584 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99997 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00474 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99827 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47094 * 59.99667 * 18 16 14 20 20 H 1.48498 * 109.46809 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46918 * 299.99748 * 18 16 14 22 22 C 1.38833 * 120.12909 * 359.67990 * 11 10 9 23 23 C 1.37900 * 120.06383 * 0.03902 * 22 11 10 24 24 C 1.39139 * 119.89236 * 359.44073 * 7 6 5 25 25 H 4.52033 * 14.03816 * 359.97438 * 4 2 1 26 26 H 1.07997 * 119.94278 * 0.03418 * 4 3 2 27 27 H 1.07996 * 119.85548 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.91480 * 179.97438 * 6 5 4 29 29 H 1.07999 * 120.02916 * 0.02562 * 9 8 7 30 30 H 1.07998 * 119.97084 * 180.25407 * 10 9 8 31 31 H 1.08998 * 109.47293 * 300.00669 * 13 12 11 32 32 H 1.09001 * 109.46834 * 60.00530 * 13 12 11 33 33 H 0.96995 * 120.00564 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.96399 * 180.02562 * 22 11 10 35 35 H 1.07997 * 120.03333 * 180.02562 * 23 22 11 36 36 H 1.07995 * 120.13318 * 180.25064 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3059 0.0124 -1.2081 5 6 4.6863 0.0125 -1.2086 6 6 5.3831 0.0004 -0.0159 7 6 4.6957 -0.0174 1.1969 8 6 5.4467 -0.0371 2.4764 9 6 4.7597 -0.0491 3.6890 10 6 5.4604 -0.0732 4.8766 11 6 6.8487 -0.0735 4.8652 12 8 7.5363 -0.0911 6.0369 13 6 6.7666 -0.1082 7.2408 14 6 7.6930 -0.1256 8.4292 15 1 8.7627 -0.1242 8.2801 16 6 7.1750 -0.1443 9.7068 17 7 5.8725 -0.1475 9.8884 18 14 8.3235 -0.1651 11.1800 19 1 9.1793 1.0481 11.1576 20 1 7.5235 -0.1843 12.4310 21 1 9.1804 -1.3766 11.1225 22 6 7.5357 -0.0562 3.6589 23 6 6.8404 -0.0378 2.4681 24 6 3.3043 -0.0113 1.2055 25 1 -1.0499 -0.0005 0.0001 26 1 2.7664 0.0216 -2.1436 27 1 5.2236 0.0212 -2.1454 28 1 6.4631 0.0001 -0.0231 29 1 3.6798 -0.0444 3.6985 30 1 4.9287 -0.0867 5.8166 31 1 6.1385 0.7816 7.2831 32 1 6.1374 -0.9981 7.2571 33 1 5.5081 -0.1603 10.7872 34 1 8.6157 -0.0568 3.6531 35 1 7.3753 -0.0248 1.5300 36 1 2.7679 -0.0210 2.1428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241922049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:14 Heat of formation + Delta-G solvation = 40.396816 kcal Electronic energy + Delta-G solvation = -18998.626458 eV Core-core repulsion = 15992.350111 eV Total energy + Delta-G solvation = -3006.276347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18398 -40.13024 -38.18272 -35.15343 -34.78923 -33.08001 -32.21464 -31.13988 -30.13057 -28.80482 -25.60675 -24.63138 -24.22572 -22.59084 -22.00511 -19.74707 -19.16206 -18.55834 -17.54223 -16.98038 -16.89014 -16.51537 -16.39507 -15.66390 -15.45489 -15.18739 -14.85055 -14.52763 -14.46077 -14.06652 -13.69069 -13.66140 -13.20213 -12.90055 -12.88576 -12.58193 -12.36128 -12.29604 -12.20073 -11.83886 -11.72007 -11.42867 -11.33591 -10.75610 -10.18936 -10.00923 -9.56666 -8.61546 -8.41399 -6.56361 -0.27970 0.08432 0.37175 0.91217 1.38263 1.43182 1.51696 1.76672 2.06511 2.25448 2.70683 2.76578 2.93342 3.17207 3.32847 3.65009 3.76428 3.89492 4.07630 4.20190 4.28173 4.29078 4.38104 4.55572 4.67176 4.74490 4.76059 4.91642 4.93186 5.05529 5.19331 5.23521 5.29544 5.38976 5.49401 5.51252 5.52341 5.74229 5.80285 5.84884 5.98310 6.47514 6.56961 6.75446 7.15831 8.70700 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.002958 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.536687 B = 9462.068098 C =10344.455090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.199 4.199 3 C -0.006 4.006 4 C -0.106 4.106 5 C -0.107 4.107 6 C -0.108 4.108 7 C -0.039 4.039 8 C -0.103 4.103 9 C -0.071 4.071 10 C -0.226 4.226 11 C 0.114 3.886 12 O -0.334 6.334 13 C 0.212 3.788 14 C -0.560 4.560 15 H 0.068 0.932 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.989 3.011 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.263 1.263 22 C -0.164 4.164 23 C -0.057 4.057 24 C -0.112 4.112 25 H 0.259 0.741 26 H 0.143 0.857 27 H 0.163 0.837 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.274 0.726 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 0.344 -23.090 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.199 4.199 3 C -0.006 4.006 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.126 4.126 7 C -0.039 4.039 8 C -0.103 4.103 9 C -0.088 4.088 10 C -0.244 4.244 11 C 0.068 3.932 12 O -0.248 6.248 13 C 0.138 3.862 14 C -0.597 4.597 15 H 0.087 0.913 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.811 3.189 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.188 1.188 22 C -0.182 4.182 23 C -0.075 4.075 24 C -0.129 4.129 25 H 0.275 0.725 26 H 0.161 0.839 27 H 0.181 0.819 28 H 0.170 0.830 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.394 0.340 -22.903 23.532 hybrid contribution -0.392 -0.021 1.491 1.542 sum -5.786 0.319 -21.412 22.183 Atomic orbital electron populations 1.25798 0.96574 0.97488 0.97266 1.20515 0.92836 1.03213 1.03316 1.16080 0.87153 1.03273 0.94097 1.21516 0.94952 0.99028 0.96886 1.21371 0.93441 0.98578 0.99092 1.21659 1.01553 0.98470 0.90922 1.18666 0.92303 1.00398 0.92488 1.18751 0.93564 1.06198 0.91811 1.21138 1.00218 0.96698 0.90793 1.21324 0.93635 1.09760 0.99726 1.19841 0.91322 0.94626 0.87435 1.86035 1.38058 1.87141 1.13590 1.20181 0.91694 0.94841 0.79441 1.21306 0.94147 1.53793 0.90445 0.91336 1.25992 0.97389 0.93379 1.02105 1.70048 1.12911 1.49410 1.24087 0.85147 0.77966 0.79561 0.76254 1.18792 1.19817 1.18805 1.20649 1.01192 1.07245 0.89154 1.21300 0.92592 0.95665 0.97909 1.21354 0.93621 1.00407 0.97564 0.72453 0.83893 0.81937 0.82965 0.84585 0.87059 0.98154 0.98153 0.91683 0.83731 0.81243 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 19.25 74.32 1.43 -1.13 16 2 C -0.20 -4.37 13.23 30.01 0.40 -3.98 16 3 C -0.01 -0.14 5.72 -21.44 -0.12 -0.26 16 4 C -0.11 -1.88 9.74 22.56 0.22 -1.66 16 5 C -0.11 -1.60 10.02 22.20 0.22 -1.38 16 6 C -0.11 -1.95 9.42 22.53 0.21 -1.74 16 7 C -0.04 -0.93 5.87 -20.08 -0.12 -1.05 16 8 C -0.10 -2.94 5.88 -20.03 -0.12 -3.05 16 9 C -0.07 -2.33 9.42 22.46 0.21 -2.12 16 10 C -0.23 -9.16 9.02 22.33 0.20 -8.96 16 11 C 0.11 4.86 6.69 22.56 0.15 5.01 16 12 O -0.33 -17.14 10.12 -92.07 -0.93 -18.07 16 13 C 0.21 12.04 4.49 71.24 0.32 12.36 16 14 C -0.56 -33.19 9.43 25.60 0.24 -32.95 16 15 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 16 C 0.01 0.62 5.46 84.65 0.46 1.08 16 17 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 18 Si 0.99 43.70 29.54 68.60 2.03 45.72 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 C -0.16 -5.44 9.97 22.33 0.22 -5.22 16 23 C -0.06 -1.51 9.42 22.46 0.21 -1.30 16 24 C -0.11 -2.78 9.13 22.75 0.21 -2.57 16 25 H 0.26 1.83 7.80 -4.42 -0.03 1.79 16 26 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 27 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 28 H 0.15 1.94 6.19 -2.91 -0.02 1.92 16 29 H 0.14 3.93 6.19 -2.91 -0.02 3.91 16 30 H 0.11 4.96 6.28 -2.91 -0.02 4.94 16 31 H 0.00 0.04 7.66 -2.39 -0.02 0.02 16 32 H 0.00 0.04 7.65 -2.39 -0.02 0.02 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.32 16 34 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.17 2.92 6.19 -2.91 -0.02 2.91 16 36 H 0.12 3.04 6.20 -2.91 -0.02 3.03 16 Total: -1.00 -70.48 320.87 6.83 -63.65 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.10 Total: 12.43 kcal Atomic # 6 Polarization: -53.27 SS G_CDS: 4.35 Total: -48.92 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.81 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.93 Total: -18.07 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.48 6.83 -63.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241922049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.048 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds