Wall clock time and date at job start Mon Mar 30 2020 23:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39659 * 120.02079 * 312.48008 * 3 2 1 5 5 C 1.37686 * 119.98122 * 180.02562 * 4 3 2 6 6 C 1.39494 * 120.01756 * 0.02562 * 5 4 3 7 7 C 1.48266 * 119.97885 * 179.97438 * 6 5 4 8 8 C 1.39433 * 120.06832 * 180.02562 * 7 6 5 9 9 C 1.37891 * 119.92713 * 180.02562 * 8 7 6 10 10 C 1.38849 * 120.06723 * 0.02562 * 9 8 7 11 11 O 1.35875 * 119.92723 * 179.97438 * 10 9 8 12 12 C 1.42893 * 117.00195 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47124 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00360 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99933 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00381 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00003 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46951 * 90.00621 * 17 15 13 19 19 H 1.48501 * 109.47333 * 210.00401 * 17 15 13 20 20 H 1.48495 * 109.47552 * 330.00552 * 17 15 13 21 21 C 1.38838 * 120.14502 * 0.24964 * 10 9 8 22 22 C 1.37888 * 120.07010 * 359.45357 * 21 10 9 23 23 C 1.39490 * 120.04208 * 0.25109 * 6 5 4 24 24 C 1.37688 * 120.01560 * 359.48836 * 23 6 5 25 25 H 4.51948 * 14.05806 * 359.97438 * 4 2 1 26 26 H 1.08006 * 120.00670 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.98790 * 179.97438 * 5 4 3 28 28 H 1.07996 * 120.03372 * 0.04044 * 8 7 6 29 29 H 1.07995 * 119.96310 * 179.97438 * 9 8 7 30 30 H 1.08998 * 109.46946 * 300.00239 * 12 11 10 31 31 H 1.08999 * 109.47054 * 59.99723 * 12 11 10 32 32 H 0.96991 * 120.00069 * 179.97438 * 16 15 13 33 33 H 1.08001 * 119.96716 * 179.70381 * 21 10 9 34 34 H 1.08004 * 120.03793 * 180.27350 * 22 21 10 35 35 H 1.07998 * 119.99564 * 179.72689 * 23 6 5 36 36 H 1.08005 * 120.00709 * 180.25005 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3051 -0.8157 0.8918 5 6 4.6819 -0.8140 0.8915 6 6 5.3786 0.0031 0.0011 7 6 6.8612 0.0046 0.0018 8 6 7.5595 0.8211 -0.8870 9 6 8.9384 0.8198 -0.8842 10 6 9.6314 0.0062 0.0022 11 8 10.9902 0.0068 0.0022 12 6 11.6393 -0.8535 0.9404 13 6 13.1332 -0.7198 0.7944 14 1 13.5457 -0.0456 0.0585 15 6 13.9735 -1.4591 1.5998 16 7 15.2773 -1.3428 1.4721 17 14 13.2600 -2.6258 2.8722 18 1 13.0705 -3.9668 2.2630 19 1 14.1918 -2.7325 4.0236 20 1 11.9507 -2.1058 3.3417 21 6 8.9391 -0.8121 0.8846 22 6 7.5603 -0.8109 0.8910 23 6 4.6812 0.8231 -0.8861 24 6 3.3043 0.8187 -0.8908 25 1 -1.0500 -0.0001 0.0009 26 1 2.7658 -1.4481 1.5816 27 1 5.2227 -1.4449 1.5814 28 1 7.0209 1.4539 -1.5768 29 1 9.4797 1.4516 -1.5727 30 1 11.3463 -0.5744 1.9525 31 1 11.3469 -1.8860 0.7493 32 1 15.8683 -1.8626 2.0389 33 1 9.4812 -1.4473 1.5696 34 1 7.0223 -1.4444 1.5807 35 1 5.2213 1.4587 -1.5721 36 1 2.7645 1.4506 -1.5805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242295606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:17 Heat of formation + Delta-G solvation = 61.000316 kcal Electronic energy + Delta-G solvation = -18973.370386 eV Core-core repulsion = 15967.987475 eV Total energy + Delta-G solvation = -3005.382912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07407 -39.07074 -36.93676 -34.10415 -32.88956 -31.64890 -31.39986 -30.59499 -28.89882 -27.67553 -23.95344 -23.73197 -22.54423 -21.34995 -20.70235 -19.23299 -17.99278 -16.93380 -16.51322 -15.90949 -15.71751 -14.95367 -14.89656 -14.35918 -14.33359 -14.05011 -13.91155 -13.57821 -13.05618 -12.93439 -12.50962 -12.45517 -12.20544 -11.59175 -11.54138 -11.35496 -11.12877 -11.07150 -10.81349 -10.48197 -10.34055 -10.03017 -9.41175 -9.20616 -8.94340 -8.86262 -8.74313 -7.39182 -6.28579 -4.31102 0.44034 1.20904 1.55653 1.77780 2.46593 2.86648 3.13482 3.19729 3.21300 3.73904 3.99482 4.05300 4.15526 4.19814 4.61136 4.62496 4.72699 4.98395 5.01700 5.11892 5.17983 5.26362 5.35445 5.50076 5.66391 5.73959 5.82571 5.87887 6.10837 6.18772 6.23339 6.25759 6.28085 6.47393 6.64868 6.66302 6.74433 6.76785 6.99793 7.24848 7.32219 7.91290 8.44048 8.80467 9.26806 10.83633 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.040586 B = 0.002911 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.727936 B = 9615.936718 C =10290.518335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.140 4.140 3 C -0.013 4.013 4 C -0.087 4.087 5 C -0.123 4.123 6 C -0.003 4.003 7 C -0.121 4.121 8 C -0.063 4.063 9 C -0.165 4.165 10 C 0.161 3.839 11 O -0.299 6.299 12 C 0.166 3.834 13 C -0.530 4.530 14 H 0.087 0.913 15 C 0.078 3.922 16 N -0.886 5.886 17 Si 0.874 3.126 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.217 4.217 22 C -0.060 4.060 23 C -0.122 4.122 24 C -0.087 4.087 25 H 0.223 0.777 26 H 0.125 0.875 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.020 0.980 31 H 0.016 0.984 32 H 0.270 0.730 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.502 1.936 -2.096 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.013 4.013 4 C -0.105 4.105 5 C -0.140 4.140 6 C -0.003 4.003 7 C -0.121 4.121 8 C -0.081 4.081 9 C -0.184 4.184 10 C 0.113 3.887 11 O -0.211 6.211 12 C 0.093 3.907 13 C -0.568 4.568 14 H 0.105 0.895 15 C -0.125 4.125 16 N -0.523 5.523 17 Si 0.700 3.300 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.235 4.235 22 C -0.078 4.078 23 C -0.140 4.140 24 C -0.105 4.105 25 H 0.239 0.761 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.124 1.972 -2.132 25.291 hybrid contribution -0.419 -0.864 0.922 1.331 sum -25.543 1.109 -1.210 25.596 Atomic orbital electron populations 1.24851 0.95753 1.00099 1.00020 1.20128 0.92082 1.00902 1.00924 1.15977 0.86437 0.99931 0.98949 1.21084 0.93903 0.97826 0.97674 1.21158 0.93561 0.99832 0.99487 1.18924 0.92115 0.94762 0.94534 1.18493 0.90956 1.02034 1.00661 1.20935 0.93025 0.97068 0.97094 1.20391 0.93425 1.02791 1.01779 1.19463 0.84626 0.92194 0.92437 1.86173 1.13827 1.62666 1.58415 1.21049 0.94026 0.88407 0.87226 1.20757 0.86725 1.27121 1.22200 0.89524 1.24711 0.94667 0.96397 0.96765 1.69849 1.02210 1.40895 1.39389 0.86886 0.79648 0.81813 0.81699 1.19591 1.20379 1.18944 1.21343 0.94894 1.04035 1.03259 1.20971 0.93316 0.96741 0.96779 1.21144 0.93532 0.99776 0.99555 1.21080 0.93917 0.97825 0.97680 0.76050 0.85660 0.85166 0.85493 0.85018 0.96190 0.96661 0.91989 0.85048 0.85889 0.85101 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.14 -1.45 13.23 -38.84 -0.51 -1.96 16 3 C -0.01 -0.14 5.73 -106.91 -0.61 -0.75 16 4 C -0.09 -0.89 9.73 -39.25 -0.38 -1.28 16 5 C -0.12 -1.32 9.41 -39.32 -0.37 -1.69 16 6 C 0.00 -0.04 5.88 -104.84 -0.62 -0.66 16 7 C -0.12 -1.63 5.88 -104.88 -0.62 -2.25 16 8 C -0.06 -0.84 9.42 -39.26 -0.37 -1.21 16 9 C -0.17 -2.60 9.97 -39.48 -0.39 -3.00 16 10 C 0.16 3.04 6.69 -39.13 -0.26 2.77 16 11 O -0.30 -6.83 10.11 -19.35 -0.20 -7.03 16 12 C 0.17 4.03 3.56 36.00 0.13 4.15 16 13 C -0.53 -15.12 9.99 -34.44 -0.34 -15.47 16 14 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 16 N -0.89 -26.36 13.96 55.43 0.77 -25.58 16 17 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 21 C -0.22 -3.68 9.02 -39.49 -0.36 -4.04 16 22 C -0.06 -0.85 9.42 -39.26 -0.37 -1.22 16 23 C -0.12 -1.28 9.41 -39.32 -0.37 -1.65 16 24 C -0.09 -0.88 9.73 -39.25 -0.38 -1.26 16 25 H 0.22 0.91 7.80 -54.09 -0.42 0.48 16 26 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 27 H 0.13 1.21 6.18 -52.49 -0.32 0.89 16 28 H 0.13 1.29 6.18 -52.49 -0.32 0.97 16 29 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.02 0.48 6.73 -51.93 -0.35 0.13 16 31 H 0.02 0.36 7.07 -51.93 -0.37 0.00 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.13 2.26 6.28 -52.49 -0.33 1.93 16 34 H 0.12 1.42 6.18 -52.48 -0.32 1.09 16 35 H 0.13 1.12 6.18 -52.49 -0.32 0.80 16 36 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -31.08 317.23 -8.29 -39.37 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.62 Total: 1.17 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -5.36 Total: -28.37 kcal Atomic # 7 Polarization: -26.36 SS G_CDS: 0.77 Total: -25.58 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.20 Total: -7.03 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.08 -8.29 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242295606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.375 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds