Wall clock time and date at job start Mon Mar 30 2020 23:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39659 * 120.02079 * 312.48008 * 3 2 1 5 5 C 1.37686 * 119.98122 * 180.02562 * 4 3 2 6 6 C 1.39494 * 120.01756 * 0.02562 * 5 4 3 7 7 C 1.48266 * 119.97885 * 179.97438 * 6 5 4 8 8 C 1.39433 * 120.06832 * 180.02562 * 7 6 5 9 9 C 1.37891 * 119.92713 * 180.02562 * 8 7 6 10 10 C 1.38849 * 120.06723 * 0.02562 * 9 8 7 11 11 O 1.35875 * 119.92723 * 179.97438 * 10 9 8 12 12 C 1.42893 * 117.00195 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47124 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00360 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99933 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00381 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00003 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46951 * 90.00621 * 17 15 13 19 19 H 1.48501 * 109.47333 * 210.00401 * 17 15 13 20 20 H 1.48495 * 109.47552 * 330.00552 * 17 15 13 21 21 C 1.38838 * 120.14502 * 0.24964 * 10 9 8 22 22 C 1.37888 * 120.07010 * 359.45357 * 21 10 9 23 23 C 1.39490 * 120.04208 * 0.25109 * 6 5 4 24 24 C 1.37688 * 120.01560 * 359.48836 * 23 6 5 25 25 H 4.51948 * 14.05806 * 359.97438 * 4 2 1 26 26 H 1.08006 * 120.00670 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.98790 * 179.97438 * 5 4 3 28 28 H 1.07996 * 120.03372 * 0.04044 * 8 7 6 29 29 H 1.07995 * 119.96310 * 179.97438 * 9 8 7 30 30 H 1.08998 * 109.46946 * 300.00239 * 12 11 10 31 31 H 1.08999 * 109.47054 * 59.99723 * 12 11 10 32 32 H 0.96991 * 120.00069 * 179.97438 * 16 15 13 33 33 H 1.08001 * 119.96716 * 179.70381 * 21 10 9 34 34 H 1.08004 * 120.03793 * 180.27350 * 22 21 10 35 35 H 1.07998 * 119.99564 * 179.72689 * 23 6 5 36 36 H 1.08005 * 120.00709 * 180.25005 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3051 -0.8157 0.8918 5 6 4.6819 -0.8140 0.8915 6 6 5.3786 0.0031 0.0011 7 6 6.8612 0.0046 0.0018 8 6 7.5595 0.8211 -0.8870 9 6 8.9384 0.8198 -0.8842 10 6 9.6314 0.0062 0.0022 11 8 10.9902 0.0068 0.0022 12 6 11.6393 -0.8535 0.9404 13 6 13.1332 -0.7198 0.7944 14 1 13.5457 -0.0456 0.0585 15 6 13.9735 -1.4591 1.5998 16 7 15.2773 -1.3428 1.4721 17 14 13.2600 -2.6258 2.8722 18 1 13.0705 -3.9668 2.2630 19 1 14.1918 -2.7325 4.0236 20 1 11.9507 -2.1058 3.3417 21 6 8.9391 -0.8121 0.8846 22 6 7.5603 -0.8109 0.8910 23 6 4.6812 0.8231 -0.8861 24 6 3.3043 0.8187 -0.8908 25 1 -1.0500 -0.0001 0.0009 26 1 2.7658 -1.4481 1.5816 27 1 5.2227 -1.4449 1.5814 28 1 7.0209 1.4539 -1.5768 29 1 9.4797 1.4516 -1.5727 30 1 11.3463 -0.5744 1.9525 31 1 11.3469 -1.8860 0.7493 32 1 15.8683 -1.8626 2.0389 33 1 9.4812 -1.4473 1.5696 34 1 7.0223 -1.4444 1.5807 35 1 5.2213 1.4587 -1.5721 36 1 2.7645 1.4506 -1.5805 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242295606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:17 Heat of formation + Delta-G solvation = 44.854927 kcal Electronic energy + Delta-G solvation = -18974.070503 eV Core-core repulsion = 15967.987475 eV Total energy + Delta-G solvation = -3006.083028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19751 -40.15749 -38.23253 -35.12894 -34.76539 -32.61666 -32.36279 -31.61276 -30.60786 -28.89884 -25.32520 -24.70744 -23.91124 -22.39914 -21.93593 -19.97475 -19.55057 -18.59619 -17.74046 -17.07849 -16.65400 -16.61532 -16.26863 -15.64519 -15.25580 -15.22402 -14.82474 -14.71405 -14.44322 -14.00039 -13.92924 -13.74728 -13.38570 -13.04804 -12.97144 -12.50884 -12.34414 -12.28639 -11.93836 -11.85129 -11.70446 -11.45267 -11.26076 -10.92471 -10.02184 -9.95962 -9.89116 -8.53944 -8.44962 -6.56072 -0.44982 0.38869 0.45032 0.71589 1.30536 1.33450 1.43577 1.80279 2.06963 2.23178 2.53788 2.79240 2.87228 3.17496 3.37842 3.67756 3.73166 3.88957 4.03763 4.09943 4.26408 4.35042 4.41154 4.42345 4.62229 4.72180 4.75656 4.77380 4.93805 4.99630 5.14232 5.20957 5.29052 5.30982 5.46651 5.48667 5.50906 5.75704 5.76956 5.94824 6.00922 6.48327 6.60186 6.72642 7.07877 8.71429 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.040586 B = 0.002911 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.727936 B = 9615.936718 C =10290.518335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.196 4.196 3 C -0.016 4.016 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.029 4.029 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.168 4.168 10 C 0.114 3.886 11 O -0.332 6.332 12 C 0.181 3.819 13 C -0.556 4.556 14 H 0.035 0.965 15 C 0.019 3.981 16 N -0.934 5.934 17 Si 0.951 3.049 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.242 1.242 21 C -0.224 4.224 22 C -0.063 4.063 23 C -0.118 4.118 24 C -0.096 4.096 25 H 0.259 0.741 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.162 0.838 29 H 0.136 0.864 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.276 0.724 33 H 0.126 0.874 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.871 1.164 -1.260 29.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.196 4.196 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.139 4.139 6 C -0.029 4.029 7 C -0.105 4.105 8 C -0.077 4.077 9 C -0.187 4.187 10 C 0.067 3.933 11 O -0.245 6.245 12 C 0.107 3.893 13 C -0.593 4.593 14 H 0.054 0.946 15 C -0.180 4.180 16 N -0.572 5.572 17 Si 0.772 3.228 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.165 1.165 21 C -0.243 4.243 22 C -0.081 4.081 23 C -0.136 4.136 24 C -0.113 4.113 25 H 0.275 0.725 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.179 0.821 29 H 0.154 0.846 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -29.521 1.217 -1.315 29.576 hybrid contribution 0.634 -0.517 0.543 0.982 sum -28.888 0.700 -0.772 28.906 Atomic orbital electron populations 1.25778 0.96544 0.97484 0.97447 1.20457 0.92706 1.03192 1.03211 1.16282 0.87255 0.99454 0.98622 1.21289 0.93855 0.98215 0.98112 1.21349 0.93915 0.99456 0.99210 1.18916 0.91018 0.96663 0.96316 1.18783 0.92107 1.00399 0.99247 1.21284 0.91909 0.97115 0.97394 1.20603 0.94557 1.02298 1.01246 1.19827 0.82981 0.95175 0.95282 1.86080 1.16523 1.63222 1.58713 1.20668 0.91341 0.89282 0.87992 1.21014 0.89791 1.26831 1.21684 0.94649 1.25789 0.94863 0.98213 0.99153 1.70002 1.04057 1.42285 1.40865 0.85670 0.79763 0.79158 0.78245 1.18090 1.19487 1.16546 1.21391 0.96114 1.03842 1.02962 1.21252 0.92222 0.97188 0.97423 1.21370 0.93846 0.99237 0.99130 1.21313 0.93916 0.98095 0.98014 0.72534 0.84220 0.83915 0.82058 0.84578 0.95450 0.95585 0.91444 0.85564 0.83111 0.83335 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 19.25 74.32 1.43 -0.55 16 2 C -0.20 -3.54 13.23 30.01 0.40 -3.14 16 3 C -0.02 -0.31 5.73 -21.35 -0.12 -0.44 16 4 C -0.10 -1.77 9.73 22.48 0.22 -1.55 16 5 C -0.12 -2.32 9.41 22.44 0.21 -2.10 16 6 C -0.03 -0.61 5.88 -20.01 -0.12 -0.73 16 7 C -0.11 -2.60 5.88 -20.03 -0.12 -2.71 16 8 C -0.06 -1.46 9.42 22.48 0.21 -1.25 16 9 C -0.17 -5.30 9.97 22.33 0.22 -5.07 16 10 C 0.11 4.37 6.69 22.56 0.15 4.52 16 11 O -0.33 -15.93 10.11 -92.14 -0.93 -16.86 16 12 C 0.18 9.02 3.56 71.23 0.25 9.27 16 13 C -0.56 -33.39 9.99 25.60 0.26 -33.14 16 14 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 15 C 0.02 1.11 5.47 84.65 0.46 1.57 16 16 N -0.93 -57.63 13.96 21.45 0.30 -57.33 16 17 Si 0.95 41.92 27.47 68.60 1.88 43.80 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 21 C -0.22 -7.54 9.02 22.33 0.20 -7.34 16 22 C -0.06 -1.68 9.42 22.48 0.21 -1.46 16 23 C -0.12 -2.13 9.41 22.44 0.21 -1.92 16 24 C -0.10 -1.68 9.73 22.48 0.22 -1.46 16 25 H 0.26 0.88 7.80 -4.42 -0.03 0.85 16 26 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 27 H 0.14 2.24 6.18 -2.91 -0.02 2.22 16 28 H 0.16 2.76 6.18 -2.91 -0.02 2.74 16 29 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.03 1.31 6.73 -2.39 -0.02 1.30 16 31 H 0.03 1.23 7.07 -2.39 -0.02 1.21 16 32 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.13 4.27 6.28 -2.91 -0.02 4.25 16 34 H 0.15 3.05 6.18 -2.91 -0.02 3.03 16 35 H 0.15 2.03 6.18 -2.91 -0.02 2.01 16 36 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -71.62 317.23 6.60 -65.03 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.04 Total: 12.88 kcal Atomic # 6 Polarization: -51.81 SS G_CDS: 4.30 Total: -47.51 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.30 Total: -57.33 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.93 Total: -16.86 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.80 kcal Total: -71.62 6.60 -65.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242295606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.880 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds