Wall clock time and date at job start Mon Mar 30 2020 23:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39894 * 109.47301 * 2 1 4 4 F 1.39900 * 109.46770 * 240.00200 * 2 1 3 5 5 C 1.52996 * 109.47308 * 120.00514 * 2 1 3 6 6 C 1.53001 * 109.47531 * 179.97438 * 5 2 1 7 7 C 1.50694 * 109.47259 * 179.97438 * 6 5 2 8 8 O 1.20825 * 120.00297 * 5.18151 * 7 6 5 9 9 O 1.34232 * 119.99583 * 185.18585 * 7 6 5 10 10 C 1.45208 * 116.99741 * 175.70829 * 9 7 6 11 11 C 1.52995 * 109.47202 * 184.23849 * 10 9 7 12 12 C 1.50707 * 113.56351 * 51.06485 * 11 10 9 13 13 H 1.08002 * 119.99593 * 260.02722 * 12 11 10 14 14 C 1.37872 * 120.00027 * 80.03333 * 12 11 10 15 15 N 1.31515 * 119.99940 * 186.04594 * 14 12 11 16 16 Si 1.86798 * 120.00037 * 6.04345 * 14 12 11 17 17 H 1.48503 * 109.47016 * 84.71458 * 16 14 12 18 18 H 1.48498 * 109.47519 * 204.71206 * 16 14 12 19 19 H 1.48500 * 109.47320 * 324.71622 * 16 14 12 20 20 C 1.53358 * 114.56777 * 185.34024 * 11 10 9 21 21 O 1.43348 * 88.49738 * 86.63157 * 20 11 10 22 22 C 1.43350 * 88.31960 * 28.13082 * 21 20 11 23 23 H 1.09000 * 109.47119 * 299.99822 * 1 2 3 24 24 H 1.09002 * 109.47696 * 59.99363 * 1 2 3 25 25 H 1.09000 * 109.47914 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47397 * 59.99196 * 5 2 1 27 27 H 1.09000 * 109.46757 * 299.99886 * 5 2 1 28 28 H 1.08999 * 109.46872 * 59.99218 * 6 5 2 29 29 H 1.08997 * 109.46569 * 300.00194 * 6 5 2 30 30 H 1.08994 * 109.46937 * 64.23878 * 10 9 7 31 31 H 1.08999 * 109.47066 * 304.24288 * 10 9 7 32 32 H 0.97004 * 119.99976 * 179.97438 * 15 14 12 33 33 H 1.09001 * 113.39607 * 331.71149 * 20 11 10 34 34 H 1.09008 * 113.39356 * 201.55036 * 20 11 10 35 35 H 1.08997 * 113.39571 * 86.75370 * 22 21 20 36 36 H 1.09009 * 113.38816 * 216.90585 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9962 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2491 6 6 3.5700 -0.7219 1.2489 7 6 4.0723 -1.4319 2.4795 8 8 3.2912 -1.9715 3.2268 9 8 5.3876 -1.4646 2.7455 10 6 5.7921 -2.0823 3.9959 11 6 7.3043 -1.9325 4.1730 12 6 7.7946 -0.5185 3.9956 13 1 8.2426 -0.2156 3.0608 14 6 7.6712 0.3883 5.0268 15 7 7.9884 1.6501 4.8343 16 14 7.0534 -0.1751 6.6972 17 1 8.1885 -0.7142 7.4886 18 1 6.4512 0.9760 7.4164 19 1 6.0297 -1.2352 6.5146 20 6 7.8779 -2.6575 5.3966 21 8 7.9957 -3.8394 4.5941 22 6 8.1402 -2.9940 3.4454 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 1.6766 -1.7490 1.2492 27 1 1.6767 -0.2075 2.1391 28 1 3.9337 0.3056 1.2486 29 1 3.9329 -1.2359 0.3588 30 1 5.5312 -3.1404 3.9794 31 1 5.2791 -1.5945 4.8247 32 1 7.9012 2.2882 5.5597 33 1 7.1638 -2.7587 6.2139 34 1 8.8384 -2.2596 5.7246 35 1 9.1690 -2.6837 3.2631 36 1 7.6563 -3.3906 2.5527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263547222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:37 Heat of formation + Delta-G solvation = -201.851979 kcal Electronic energy + Delta-G solvation = -22276.795935 eV Core-core repulsion = 18398.476443 eV Total energy + Delta-G solvation = -3878.319492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.09262 -47.06185 -40.38108 -39.63872 -36.11458 -34.28271 -32.98905 -31.08910 -30.48133 -26.48537 -25.65500 -24.83882 -24.25932 -21.79777 -20.29402 -18.92089 -17.78268 -17.62615 -17.09770 -16.43190 -16.30555 -16.03390 -15.79216 -15.38661 -14.92674 -14.46513 -14.39993 -13.71622 -13.50137 -13.46673 -13.39683 -12.90110 -12.74695 -12.71045 -12.48099 -12.41863 -11.94214 -11.78229 -11.37191 -11.25454 -11.03536 -10.92633 -10.68824 -10.31591 -10.09879 -10.05780 -9.25886 -9.16424 -8.99277 -8.60457 -6.24011 -4.25394 2.57537 3.03536 3.13069 3.18009 3.25585 3.65311 3.96148 4.21247 4.23564 4.24105 4.75453 4.83352 4.90785 5.01586 5.05563 5.20941 5.32509 5.41280 5.51664 5.55642 5.68759 5.75955 5.83433 5.96831 6.06026 6.09823 6.12874 6.29064 6.64000 6.78798 6.84306 7.07680 7.47842 8.19896 8.34017 8.80282 9.36178 10.88536 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.004675 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.617563 B = 5988.435289 C = 6487.040377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.287 3.713 3 F -0.198 7.198 4 F -0.201 7.201 5 C -0.149 4.149 6 C -0.121 4.121 7 C 0.461 3.539 8 O -0.527 6.527 9 O -0.323 6.323 10 C 0.096 3.904 11 C -0.019 4.019 12 C -0.500 4.500 13 H 0.085 0.915 14 C 0.080 3.920 15 N -0.888 5.888 16 Si 0.858 3.142 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.260 1.260 20 C 0.023 3.977 21 O -0.388 6.388 22 C 0.043 3.957 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.267 0.733 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 -3.846 -7.363 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.251 3.749 3 F -0.180 7.180 4 F -0.182 7.182 5 C -0.187 4.187 6 C -0.158 4.158 7 C 0.305 3.695 8 O -0.418 6.418 9 O -0.237 6.237 10 C 0.022 3.978 11 C -0.020 4.020 12 C -0.538 4.538 13 H 0.103 0.897 14 C -0.123 4.123 15 N -0.525 5.525 16 Si 0.686 3.314 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.186 1.186 20 C -0.053 4.053 21 O -0.307 6.307 22 C -0.034 4.034 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.416 -4.099 -7.011 14.836 hybrid contribution -0.256 0.054 1.022 1.055 sum -12.672 -4.045 -5.989 14.588 Atomic orbital electron populations 1.22752 0.91407 1.05519 1.05404 1.21122 0.93859 0.75866 0.84039 1.93034 1.90535 1.37533 1.96849 1.93013 1.90587 1.80949 1.53662 1.22464 0.95675 1.03686 0.96855 1.21278 0.94885 1.03797 0.95888 1.23365 0.81740 0.77598 0.86830 1.90611 1.57277 1.43923 1.49984 1.86546 1.23713 1.72262 1.41169 1.23069 0.96670 0.95290 0.82771 1.20933 0.89963 0.97978 0.93173 1.20534 1.40059 0.91084 1.02118 0.89657 1.24911 0.94395 0.94591 0.98418 1.69877 1.47861 1.01975 1.32750 0.87403 0.80062 0.78585 0.85371 1.19589 1.21335 1.18556 1.24161 1.00856 0.84622 0.95705 1.89675 1.94459 1.25588 1.20998 1.23728 1.00473 0.89248 0.89918 0.89105 0.89997 0.89170 0.87797 0.87854 0.86684 0.87059 0.92628 0.91363 0.92337 0.91324 0.89398 0.90073 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 9.38 37.16 0.35 -1.02 16 2 C 0.29 2.96 2.11 -26.73 -0.06 2.91 16 3 F -0.20 -2.46 16.54 2.25 0.04 -2.42 16 4 F -0.20 -2.34 16.54 2.25 0.04 -2.30 16 5 C -0.15 -1.65 4.11 -26.73 -0.11 -1.76 16 6 C -0.12 -1.65 5.57 -27.89 -0.16 -1.80 16 7 C 0.46 8.34 7.95 36.00 0.29 8.63 16 8 O -0.53 -10.35 15.72 -18.75 -0.29 -10.65 16 9 O -0.32 -6.77 9.79 -39.26 -0.38 -7.15 16 10 C 0.10 2.09 4.74 37.16 0.18 2.27 16 11 C -0.02 -0.44 0.60 -155.24 -0.09 -0.53 16 12 C -0.50 -13.15 8.67 -34.44 -0.30 -13.45 16 13 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 16 Si 0.86 20.21 23.94 -169.99 -4.07 16.14 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.26 -5.84 4.67 56.52 0.26 -5.57 16 20 C 0.02 0.50 5.30 24.58 0.13 0.63 16 21 O -0.39 -8.18 12.57 -35.23 -0.44 -8.62 16 22 C 0.04 0.87 7.89 24.63 0.19 1.06 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.10 1.07 8.04 -51.93 -0.42 0.65 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.11 1.58 7.80 -51.93 -0.41 1.18 16 29 H 0.11 1.35 7.80 -51.93 -0.41 0.94 16 30 H 0.06 1.15 7.97 -51.93 -0.41 0.74 16 31 H 0.07 1.56 5.89 -51.93 -0.31 1.26 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.42 6.07 -51.93 -0.31 1.10 16 34 H 0.09 1.87 7.64 -51.92 -0.40 1.47 16 35 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 36 H 0.07 1.31 8.13 -51.92 -0.42 0.88 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -30.45 306.11 -4.29 -34.74 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.89 Total: 1.64 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 0.33 Total: -0.99 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.77 Total: -25.01 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.12 Total: -26.42 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.07 Total: -4.72 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.07 Total: 16.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.45 -4.29 -34.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.108 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds