Wall clock time and date at job start Mon Mar 30 2020 23:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39894 * 109.47301 * 2 1 4 4 F 1.39900 * 109.46770 * 240.00200 * 2 1 3 5 5 C 1.52996 * 109.47308 * 120.00514 * 2 1 3 6 6 C 1.53001 * 109.47531 * 179.97438 * 5 2 1 7 7 C 1.50694 * 109.47259 * 179.97438 * 6 5 2 8 8 O 1.20825 * 120.00297 * 5.18151 * 7 6 5 9 9 O 1.34232 * 119.99583 * 185.18585 * 7 6 5 10 10 C 1.45208 * 116.99741 * 175.70829 * 9 7 6 11 11 C 1.52995 * 109.47202 * 184.23849 * 10 9 7 12 12 C 1.50707 * 113.56351 * 51.06485 * 11 10 9 13 13 H 1.08002 * 119.99593 * 260.02722 * 12 11 10 14 14 C 1.37872 * 120.00027 * 80.03333 * 12 11 10 15 15 N 1.31515 * 119.99940 * 186.04594 * 14 12 11 16 16 Si 1.86798 * 120.00037 * 6.04345 * 14 12 11 17 17 H 1.48503 * 109.47016 * 84.71458 * 16 14 12 18 18 H 1.48498 * 109.47519 * 204.71206 * 16 14 12 19 19 H 1.48500 * 109.47320 * 324.71622 * 16 14 12 20 20 C 1.53358 * 114.56777 * 185.34024 * 11 10 9 21 21 O 1.43348 * 88.49738 * 86.63157 * 20 11 10 22 22 C 1.43350 * 88.31960 * 28.13082 * 21 20 11 23 23 H 1.09000 * 109.47119 * 299.99822 * 1 2 3 24 24 H 1.09002 * 109.47696 * 59.99363 * 1 2 3 25 25 H 1.09000 * 109.47914 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47397 * 59.99196 * 5 2 1 27 27 H 1.09000 * 109.46757 * 299.99886 * 5 2 1 28 28 H 1.08999 * 109.46872 * 59.99218 * 6 5 2 29 29 H 1.08997 * 109.46569 * 300.00194 * 6 5 2 30 30 H 1.08994 * 109.46937 * 64.23878 * 10 9 7 31 31 H 1.08999 * 109.47066 * 304.24288 * 10 9 7 32 32 H 0.97004 * 119.99976 * 179.97438 * 15 14 12 33 33 H 1.09001 * 113.39607 * 331.71149 * 20 11 10 34 34 H 1.09008 * 113.39356 * 201.55036 * 20 11 10 35 35 H 1.08997 * 113.39571 * 86.75370 * 22 21 20 36 36 H 1.09009 * 113.38816 * 216.90585 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9962 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2491 6 6 3.5700 -0.7219 1.2489 7 6 4.0723 -1.4319 2.4795 8 8 3.2912 -1.9715 3.2268 9 8 5.3876 -1.4646 2.7455 10 6 5.7921 -2.0823 3.9959 11 6 7.3043 -1.9325 4.1730 12 6 7.7946 -0.5185 3.9956 13 1 8.2426 -0.2156 3.0608 14 6 7.6712 0.3883 5.0268 15 7 7.9884 1.6501 4.8343 16 14 7.0534 -0.1751 6.6972 17 1 8.1885 -0.7142 7.4886 18 1 6.4512 0.9760 7.4164 19 1 6.0297 -1.2352 6.5146 20 6 7.8779 -2.6575 5.3966 21 8 7.9957 -3.8394 4.5941 22 6 8.1402 -2.9940 3.4454 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 1.6766 -1.7490 1.2492 27 1 1.6767 -0.2075 2.1391 28 1 3.9337 0.3056 1.2486 29 1 3.9329 -1.2359 0.3588 30 1 5.5312 -3.1404 3.9794 31 1 5.2791 -1.5945 4.8247 32 1 7.9012 2.2882 5.5597 33 1 7.1638 -2.7587 6.2139 34 1 8.8384 -2.2596 5.7246 35 1 9.1690 -2.6837 3.2631 36 1 7.6563 -3.3906 2.5527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263547222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:36 Heat of formation + Delta-G solvation = -221.278314 kcal Electronic energy + Delta-G solvation = -22277.638324 eV Core-core repulsion = 18398.476443 eV Total energy + Delta-G solvation = -3879.161881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.96244 -47.94704 -42.03108 -41.19061 -37.65073 -35.27814 -34.98202 -32.57617 -31.67788 -27.96811 -27.31087 -26.41739 -25.84466 -22.71440 -21.64038 -20.73806 -19.14915 -18.70659 -18.63907 -17.92557 -17.57792 -17.29548 -17.09246 -16.98575 -16.34053 -16.19546 -15.58803 -15.33412 -14.78054 -14.69206 -14.36907 -14.29688 -14.19044 -13.92263 -13.48648 -13.33957 -13.15870 -13.06291 -12.84158 -12.74642 -12.55471 -12.34920 -12.12959 -11.88735 -11.77501 -11.56764 -11.12049 -10.96259 -10.84809 -10.49791 -8.33375 -6.38593 1.12642 1.27746 1.29705 1.36142 1.66051 2.26648 2.81080 2.97238 3.10550 3.18576 3.31237 3.46062 3.50507 3.77667 3.95690 4.02873 4.09637 4.26324 4.35484 4.38471 4.45671 4.48772 4.59060 4.65097 4.67019 4.87946 4.90975 4.94495 5.05095 5.12048 5.13610 5.48719 5.57529 6.22435 6.64607 6.73017 7.26453 8.82471 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.004675 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.617563 B = 5988.435289 C = 6487.040377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.284 3.716 3 F -0.213 7.213 4 F -0.209 7.209 5 C -0.145 4.145 6 C -0.117 4.117 7 C 0.458 3.542 8 O -0.542 6.542 9 O -0.342 6.342 10 C 0.099 3.901 11 C -0.034 4.034 12 C -0.494 4.494 13 H 0.048 0.952 14 C 0.030 3.970 15 N -0.936 5.936 16 Si 0.907 3.093 17 H -0.251 1.251 18 H -0.294 1.294 19 H -0.242 1.242 20 C 0.026 3.974 21 O -0.386 6.386 22 C 0.049 3.951 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 -5.309 -7.119 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.248 3.752 3 F -0.195 7.195 4 F -0.191 7.191 5 C -0.183 4.183 6 C -0.154 4.154 7 C 0.303 3.697 8 O -0.433 6.433 9 O -0.257 6.257 10 C 0.025 3.975 11 C -0.035 4.035 12 C -0.532 4.532 13 H 0.066 0.934 14 C -0.169 4.169 15 N -0.575 5.575 16 Si 0.732 3.268 17 H -0.175 1.175 18 H -0.220 1.220 19 H -0.166 1.166 20 C -0.051 4.051 21 O -0.305 6.305 22 C -0.027 4.027 23 H 0.120 0.880 24 H 0.107 0.893 25 H 0.125 0.875 26 H 0.134 0.866 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.802 -5.591 -6.779 16.362 hybrid contribution 0.192 0.516 0.834 1.000 sum -13.610 -5.075 -5.945 15.695 Atomic orbital electron populations 1.22783 0.88482 1.06974 1.06373 1.21419 0.95792 0.74861 0.83165 1.93008 1.90938 1.38650 1.96862 1.92997 1.90914 1.81055 1.54093 1.22494 0.93582 1.04662 0.97543 1.21406 0.96742 1.03010 0.94253 1.24155 0.80594 0.77242 0.87699 1.90593 1.57214 1.44696 1.50807 1.86560 1.25654 1.72670 1.40819 1.22907 0.95690 0.95940 0.82975 1.21006 0.90951 0.96222 0.95334 1.20610 1.39018 0.93103 1.00453 0.93426 1.25632 0.94776 0.94422 1.02090 1.70015 1.50163 1.03389 1.33979 0.86577 0.80621 0.78516 0.81055 1.17499 1.22029 1.16602 1.24123 1.01114 0.84314 0.95520 1.89679 1.94477 1.25288 1.21069 1.23729 1.00499 0.88143 0.90343 0.87976 0.89259 0.87498 0.86615 0.87654 0.87045 0.85431 0.91270 0.92659 0.92396 0.90026 0.89276 0.89607 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 9.38 71.98 0.68 -1.52 16 2 C 0.28 5.36 2.11 30.59 0.06 5.43 16 3 F -0.21 -5.08 16.54 44.97 0.74 -4.34 16 4 F -0.21 -4.53 16.54 44.97 0.74 -3.78 16 5 C -0.14 -2.97 4.11 30.59 0.13 -2.84 16 6 C -0.12 -3.06 5.57 29.85 0.17 -2.89 16 7 C 0.46 16.14 7.95 71.23 0.57 16.71 16 8 O -0.54 -20.55 15.72 21.97 0.35 -20.21 16 9 O -0.34 -14.17 9.79 -51.43 -0.50 -14.67 16 10 C 0.10 4.19 4.74 71.98 0.34 4.53 16 11 C -0.03 -1.50 0.60 -52.65 -0.03 -1.53 16 12 C -0.49 -26.23 8.67 25.60 0.22 -26.01 16 13 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 14 C 0.03 1.62 5.47 84.65 0.46 2.08 16 15 N -0.94 -55.68 13.96 21.45 0.30 -55.39 16 16 Si 0.91 40.90 23.94 68.60 1.64 42.54 16 17 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.24 -10.10 4.67 99.48 0.46 -9.64 16 20 C 0.03 1.05 5.30 63.84 0.34 1.39 16 21 O -0.39 -15.24 12.57 -148.98 -1.87 -17.11 16 22 C 0.05 1.91 7.89 63.87 0.50 2.41 16 23 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.12 2.11 8.04 -2.38 -0.02 2.09 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.11 3.03 7.80 -2.39 -0.02 3.01 16 29 H 0.13 2.92 7.80 -2.39 -0.02 2.90 16 30 H 0.07 2.72 7.97 -2.39 -0.02 2.70 16 31 H 0.06 2.45 5.89 -2.39 -0.01 2.44 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.08 3.10 6.07 -2.39 -0.01 3.08 16 34 H 0.09 3.58 7.64 -2.38 -0.02 3.56 16 35 H 0.09 3.23 8.10 -2.39 -0.02 3.21 16 36 H 0.09 3.12 8.13 -2.38 -0.02 3.10 16 Total: -1.00 -65.11 306.11 5.68 -59.43 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.85 Total: 15.78 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 3.44 Total: -2.25 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.30 Total: -55.39 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.03 Total: -51.99 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.49 Total: -8.12 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.64 Total: 42.54 kcal Total: -65.11 5.68 -59.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.850 kcal (2) G-P(sol) polarization free energy of solvation -65.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds