Wall clock time and date at job start Tue Mar 31 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21328 * 119.99915 * 2 1 4 4 C 1.46619 * 120.00522 * 180.02562 * 2 1 3 5 5 C 1.38618 * 126.51133 * 359.97144 * 4 2 1 6 6 N 1.34113 * 108.34886 * 180.02562 * 5 4 2 7 7 H 0.96997 * 125.34714 * 179.97438 * 6 5 4 8 8 C 1.37841 * 109.30155 * 359.97438 * 6 5 4 9 9 C 1.46836 * 125.80072 * 179.97438 * 8 6 5 10 10 O 1.21678 * 120.00271 * 180.02562 * 9 8 6 11 11 N 1.34776 * 120.00285 * 0.02562 * 9 8 6 12 12 C 1.47578 * 134.49473 * 179.97438 * 11 9 8 13 13 C 1.53950 * 86.11711 * 204.66225 * 12 11 9 14 14 O 1.42905 * 113.73786 * 90.74298 * 13 12 11 15 15 C 1.50702 * 113.74361 * 221.94119 * 13 12 11 16 16 H 1.07997 * 119.99716 * 358.07712 * 15 13 12 17 17 C 1.37877 * 119.99683 * 178.07946 * 15 13 12 18 18 N 1.31519 * 119.99375 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00220 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47007 * 90.00544 * 19 17 15 21 21 H 1.48500 * 109.47115 * 209.99966 * 19 17 15 22 22 H 1.48496 * 109.47096 * 330.00048 * 19 17 15 23 23 C 1.47930 * 134.49981 * 0.03736 * 11 9 8 24 24 C 1.36247 * 108.39771 * 0.24124 * 8 6 5 25 25 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46708 * 299.99558 * 1 2 3 27 27 H 1.08991 * 109.47219 * 60.00043 * 1 2 3 28 28 H 1.08009 * 125.82887 * 0.03261 * 5 4 2 29 29 H 1.09007 * 113.76850 * 90.36997 * 12 11 9 30 30 H 1.08994 * 113.87568 * 318.97975 * 12 11 9 31 31 H 0.96696 * 114.00036 * 181.92461 * 14 13 12 32 32 H 0.97000 * 119.99411 * 179.97438 * 18 17 15 33 33 H 1.09003 * 113.86941 * 41.06551 * 23 11 9 34 34 H 1.09003 * 113.76390 * 269.57872 * 23 11 9 35 35 H 1.07998 * 126.50770 * 179.75069 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2402 -1.2697 -0.0006 5 6 1.6878 -2.5411 -0.0006 6 7 2.6871 -3.4355 -0.0006 7 1 2.5776 -4.3993 -0.0003 8 6 3.8943 -2.7701 -0.0012 9 6 5.2214 -3.3984 -0.0009 10 8 6.2222 -2.7063 -0.0010 11 7 5.3311 -4.7417 -0.0005 12 6 6.4645 -5.6868 -0.0006 13 6 5.4903 -6.6923 -0.6408 14 8 5.4877 -6.6609 -2.0695 15 6 5.6060 -8.0879 -0.0841 16 1 6.3467 -8.3087 0.6701 17 6 4.7661 -9.0828 -0.5378 18 7 4.8668 -10.3007 -0.0515 19 14 3.4845 -8.7007 -1.8418 20 1 4.0681 -8.9221 -3.1893 21 1 2.3107 -9.5917 -1.6584 22 1 3.0557 -7.2847 -1.7146 23 6 4.3639 -5.8610 -0.0009 24 6 3.6467 -1.4303 0.0039 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.6327 -2.7720 -0.0007 29 1 6.7982 -5.9728 0.9970 30 1 7.2847 -5.3921 -0.6551 31 1 4.8559 -7.2702 -2.4752 32 1 4.2757 -11.0005 -0.3704 33 1 3.5074 -5.7035 -0.6564 34 1 4.0816 -6.1979 0.9965 35 1 4.3836 -0.6408 0.0086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320483388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:00 Heat of formation + Delta-G solvation = -23.834549 kcal Electronic energy + Delta-G solvation = -21315.886460 eV Core-core repulsion = 17895.975569 eV Total energy + Delta-G solvation = -3419.910891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60951 -39.71066 -38.71331 -37.58823 -34.67150 -32.71439 -31.93878 -30.68976 -29.70112 -28.21087 -25.99890 -25.54941 -23.03273 -22.14910 -20.25518 -19.86541 -18.70536 -17.94118 -17.42959 -16.49903 -16.18619 -15.46292 -15.41572 -15.09656 -14.92073 -14.70509 -14.12907 -14.00096 -13.66416 -13.30722 -13.19504 -12.91036 -12.56541 -12.41804 -12.31662 -12.28681 -12.24029 -11.46446 -11.14606 -10.79835 -10.31536 -10.09474 -9.82942 -9.51821 -9.22665 -9.19302 -8.91582 -8.54775 -8.18349 -6.57501 -4.64901 1.24869 1.60220 2.78801 2.85079 2.89335 2.98799 3.07194 3.12128 3.58392 3.86071 4.13400 4.45953 4.64209 4.68796 4.86211 4.91362 5.02089 5.23260 5.27137 5.33879 5.54295 5.69930 5.80975 5.87801 5.91983 5.99356 6.14725 6.17953 6.40705 6.49659 6.67608 7.02122 7.10067 7.60889 7.87081 8.01514 8.32232 8.40236 8.47623 8.98748 10.54612 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025917 B = 0.004680 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.124554 B = 5981.242007 C = 6716.604485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.425 3.575 3 O -0.474 6.474 4 C -0.273 4.273 5 C 0.080 3.920 6 N -0.521 5.521 7 H 0.423 0.577 8 C -0.044 4.044 9 C 0.601 3.399 10 O -0.541 6.541 11 N -0.636 5.636 12 C 0.131 3.869 13 C 0.201 3.799 14 O -0.551 6.551 15 C -0.539 4.539 16 H 0.094 0.906 17 C 0.081 3.919 18 N -0.872 5.872 19 Si 0.860 3.140 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.050 3.950 24 C -0.057 4.057 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.184 0.816 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.353 0.647 32 H 0.272 0.728 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 9.853 0.193 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.304 3.696 3 O -0.351 6.351 4 C -0.281 4.281 5 C -0.063 4.063 6 N -0.118 5.118 7 H 0.265 0.735 8 C -0.155 4.155 9 C 0.391 3.609 10 O -0.419 6.419 11 N -0.370 5.370 12 C 0.010 3.990 13 C 0.160 3.840 14 O -0.362 6.362 15 C -0.577 4.577 16 H 0.112 0.888 17 C -0.125 4.125 18 N -0.507 5.507 19 Si 0.688 3.312 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.073 4.073 24 C -0.082 4.082 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.201 0.799 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.204 0.796 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.331 11.021 0.297 15.109 hybrid contribution -1.496 -1.059 -0.754 1.982 sum -11.827 9.962 -0.457 15.470 Atomic orbital electron populations 1.22159 0.94194 1.04209 1.04608 1.21526 0.90811 0.86718 0.70560 1.90548 1.72146 1.34152 1.38218 1.20292 0.94259 0.93722 1.19796 1.22641 0.93973 0.88384 1.01339 1.42337 1.05814 1.10107 1.53564 0.73502 1.20291 0.85175 0.92355 1.17629 1.16691 0.86753 0.80465 0.76980 1.90812 1.36805 1.61836 1.52436 1.50117 1.12491 1.02859 1.71508 1.23320 0.91177 0.83776 1.00760 1.20488 0.90340 0.94251 0.78964 1.86500 1.64014 1.65270 1.20383 1.21225 1.20926 0.90616 1.24898 0.88848 1.25018 0.96700 0.94940 0.95841 1.69852 1.37856 1.01315 1.41661 0.87336 0.82191 0.78680 0.82946 1.19108 1.20787 1.18756 1.24879 0.95545 0.84878 1.02027 1.21188 0.94921 0.93814 0.98239 0.90414 0.89086 0.89090 0.79930 0.88363 0.90114 0.79571 0.91724 0.91924 0.88118 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 10.28 36.01 0.37 -0.99 16 2 C 0.42 5.07 7.24 -30.93 -0.22 4.84 16 3 O -0.47 -7.52 17.67 5.52 0.10 -7.42 16 4 C -0.27 -3.45 6.12 -105.11 -0.64 -4.09 16 5 C 0.08 0.79 11.30 -16.41 -0.19 0.60 16 6 N -0.52 -6.48 5.80 -9.24 -0.05 -6.53 16 7 H 0.42 4.77 5.68 -40.82 -0.23 4.54 16 8 C -0.04 -0.70 6.94 -82.40 -0.57 -1.28 16 9 C 0.60 11.67 8.02 -12.78 -0.10 11.57 16 10 O -0.54 -12.07 17.59 5.21 0.09 -11.98 16 11 N -0.64 -12.02 3.62 -179.51 -0.65 -12.67 16 12 C 0.13 2.57 8.23 -2.97 -0.02 2.54 16 13 C 0.20 4.23 1.05 -90.86 -0.10 4.13 16 14 O -0.55 -12.16 13.35 -35.23 -0.47 -12.63 16 15 C -0.54 -12.99 9.20 -34.44 -0.32 -13.31 16 16 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.08 1.98 5.47 -17.82 -0.10 1.89 16 18 N -0.87 -23.10 13.96 55.43 0.77 -22.32 16 19 Si 0.86 17.31 24.31 -169.99 -4.13 13.18 16 20 H -0.26 -5.31 7.05 56.52 0.40 -4.91 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -4.72 5.16 56.52 0.29 -4.43 16 23 C 0.05 0.88 5.84 -2.79 -0.02 0.87 16 24 C -0.06 -0.89 10.37 -39.03 -0.40 -1.30 16 25 H 0.08 0.35 6.44 -51.93 -0.33 0.01 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.18 0.91 7.03 -52.48 -0.37 0.54 16 29 H 0.10 1.78 8.09 -51.92 -0.42 1.36 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.35 7.34 3.57 45.56 0.16 7.50 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.06 1.01 5.17 -51.93 -0.27 0.74 16 34 H 0.10 1.65 8.09 -51.93 -0.42 1.23 16 35 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 298.56 15.07 4.50 4.50 Total: -1.00 -31.73 298.56 -5.40 -37.13 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.24 Total: 13.26 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.31 Total: 5.48 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.07 Total: -41.53 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.28 Total: -32.03 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -4.13 Total: 13.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.73 -5.40 -37.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320483388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.295 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds