Wall clock time and date at job start Tue Mar 31 2020 01:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21328 * 119.99915 * 2 1 4 4 C 1.46619 * 120.00522 * 180.02562 * 2 1 3 5 5 C 1.38618 * 126.51133 * 359.97144 * 4 2 1 6 6 N 1.34113 * 108.34886 * 180.02562 * 5 4 2 7 7 H 0.96997 * 125.34714 * 179.97438 * 6 5 4 8 8 C 1.37841 * 109.30155 * 359.97438 * 6 5 4 9 9 C 1.46836 * 125.80072 * 179.97438 * 8 6 5 10 10 O 1.21678 * 120.00271 * 180.02562 * 9 8 6 11 11 N 1.34776 * 120.00285 * 0.02562 * 9 8 6 12 12 C 1.47578 * 134.49473 * 179.97438 * 11 9 8 13 13 C 1.53950 * 86.11711 * 204.66225 * 12 11 9 14 14 O 1.42905 * 113.73786 * 90.74298 * 13 12 11 15 15 C 1.50702 * 113.74361 * 221.94119 * 13 12 11 16 16 H 1.07997 * 119.99716 * 358.07712 * 15 13 12 17 17 C 1.37877 * 119.99683 * 178.07946 * 15 13 12 18 18 N 1.31519 * 119.99375 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00220 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47007 * 90.00544 * 19 17 15 21 21 H 1.48500 * 109.47115 * 209.99966 * 19 17 15 22 22 H 1.48496 * 109.47096 * 330.00048 * 19 17 15 23 23 C 1.47930 * 134.49981 * 0.03736 * 11 9 8 24 24 C 1.36247 * 108.39771 * 0.24124 * 8 6 5 25 25 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46708 * 299.99558 * 1 2 3 27 27 H 1.08991 * 109.47219 * 60.00043 * 1 2 3 28 28 H 1.08009 * 125.82887 * 0.03261 * 5 4 2 29 29 H 1.09007 * 113.76850 * 90.36997 * 12 11 9 30 30 H 1.08994 * 113.87568 * 318.97975 * 12 11 9 31 31 H 0.96696 * 114.00036 * 181.92461 * 14 13 12 32 32 H 0.97000 * 119.99411 * 179.97438 * 18 17 15 33 33 H 1.09003 * 113.86941 * 41.06551 * 23 11 9 34 34 H 1.09003 * 113.76390 * 269.57872 * 23 11 9 35 35 H 1.07998 * 126.50770 * 179.75069 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2402 -1.2697 -0.0006 5 6 1.6878 -2.5411 -0.0006 6 7 2.6871 -3.4355 -0.0006 7 1 2.5776 -4.3993 -0.0003 8 6 3.8943 -2.7701 -0.0012 9 6 5.2214 -3.3984 -0.0009 10 8 6.2222 -2.7063 -0.0010 11 7 5.3311 -4.7417 -0.0005 12 6 6.4645 -5.6868 -0.0006 13 6 5.4903 -6.6923 -0.6408 14 8 5.4877 -6.6609 -2.0695 15 6 5.6060 -8.0879 -0.0841 16 1 6.3467 -8.3087 0.6701 17 6 4.7661 -9.0828 -0.5378 18 7 4.8668 -10.3007 -0.0515 19 14 3.4845 -8.7007 -1.8418 20 1 4.0681 -8.9221 -3.1893 21 1 2.3107 -9.5917 -1.6584 22 1 3.0557 -7.2847 -1.7146 23 6 4.3639 -5.8610 -0.0009 24 6 3.6467 -1.4303 0.0039 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.6327 -2.7720 -0.0007 29 1 6.7982 -5.9728 0.9970 30 1 7.2847 -5.3921 -0.6551 31 1 4.8559 -7.2702 -2.4752 32 1 4.2757 -11.0005 -0.3704 33 1 3.5074 -5.7035 -0.6564 34 1 4.0816 -6.1979 0.9965 35 1 4.3836 -0.6408 0.0086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320483388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:59 Heat of formation + Delta-G solvation = -49.766937 kcal Electronic energy + Delta-G solvation = -21317.010972 eV Core-core repulsion = 17895.975569 eV Total energy + Delta-G solvation = -3421.035403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69622 -41.18755 -39.73318 -39.14072 -36.33912 -34.57944 -32.91962 -31.74128 -30.99441 -29.39097 -27.47378 -27.22189 -23.91042 -23.50356 -21.56656 -21.24411 -19.83928 -19.45781 -18.92208 -18.11374 -17.56165 -16.81993 -16.58288 -16.15491 -15.99075 -15.68339 -15.58755 -15.39750 -15.10304 -14.71356 -14.56317 -14.46015 -14.09841 -13.89429 -13.35319 -13.02467 -12.90054 -12.88992 -12.72504 -12.47957 -11.97534 -11.69707 -11.18824 -10.99396 -10.73592 -10.61007 -10.30232 -9.91655 -9.40839 -8.43619 -6.58336 0.33554 0.42363 1.21269 1.28311 1.41241 1.62808 1.93424 2.03867 2.17007 2.32687 2.74018 3.09926 3.30802 3.53592 3.69108 3.85700 4.05565 4.18767 4.24453 4.27733 4.44959 4.56720 4.59811 4.75130 4.78927 4.80630 4.83419 4.92222 5.23311 5.29500 5.45787 5.55735 6.02372 6.21868 6.50094 6.54593 6.65071 6.76439 6.90854 7.10432 8.71720 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025917 B = 0.004680 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.124554 B = 5981.242007 C = 6716.604485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.423 3.577 3 O -0.529 6.529 4 C -0.298 4.298 5 C 0.135 3.865 6 N -0.516 5.516 7 H 0.432 0.568 8 C -0.073 4.073 9 C 0.597 3.403 10 O -0.585 6.585 11 N -0.635 5.635 12 C 0.124 3.876 13 C 0.191 3.809 14 O -0.561 6.561 15 C -0.547 4.547 16 H 0.055 0.945 17 C 0.028 3.972 18 N -0.923 5.923 19 Si 0.921 3.079 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.222 1.222 23 C 0.066 3.934 24 C -0.070 4.070 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.250 0.750 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.358 0.642 32 H 0.274 0.726 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.120 10.298 -0.581 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.306 3.694 3 O -0.410 6.410 4 C -0.305 4.305 5 C -0.009 4.009 6 N -0.113 5.113 7 H 0.275 0.725 8 C -0.183 4.183 9 C 0.389 3.611 10 O -0.467 6.467 11 N -0.368 5.368 12 C 0.002 3.998 13 C 0.151 3.849 14 O -0.372 6.372 15 C -0.585 4.585 16 H 0.073 0.927 17 C -0.173 4.173 18 N -0.560 5.560 19 Si 0.745 3.255 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.145 1.145 23 C -0.056 4.056 24 C -0.096 4.096 25 H 0.133 0.867 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.266 0.734 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.210 0.790 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.832 11.451 -0.468 18.744 hybrid contribution -0.027 -1.215 -0.464 1.301 sum -14.860 10.236 -0.933 18.068 Atomic orbital electron populations 1.22192 0.89486 1.06984 1.05550 1.22308 0.93176 0.85430 0.68443 1.90540 1.73688 1.35762 1.40993 1.20559 0.92838 0.95818 1.21288 1.23593 0.95777 0.86217 0.95289 1.42276 1.04883 1.10749 1.53400 0.72480 1.19687 0.85093 0.92425 1.21115 1.17159 0.87776 0.80157 0.76007 1.90774 1.38732 1.62664 1.54529 1.50071 1.12334 1.03007 1.71435 1.23337 0.91364 0.84089 1.01008 1.20487 0.92849 0.92972 0.78641 1.86499 1.64691 1.65332 1.20713 1.21304 1.20171 0.92716 1.24300 0.92653 1.25875 0.99032 0.94319 0.98106 1.70006 1.39463 1.02709 1.43794 0.86320 0.79080 0.80747 0.79402 1.18882 1.20479 1.14537 1.24764 0.94968 0.82820 1.03056 1.21234 0.96711 0.93368 0.98288 0.86743 0.87998 0.88057 0.73441 0.87593 0.91095 0.78951 0.91605 0.89109 0.86457 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 10.28 71.24 0.73 -0.92 16 2 C 0.42 9.04 7.24 27.87 0.20 9.24 16 3 O -0.53 -16.74 17.67 -3.18 -0.06 -16.80 16 4 C -0.30 -6.65 6.12 -20.18 -0.12 -6.77 16 5 C 0.14 1.85 11.30 84.44 0.95 2.81 16 6 N -0.52 -10.46 5.80 -183.14 -1.06 -11.52 16 7 H 0.43 7.30 5.68 -92.71 -0.53 6.78 16 8 C -0.07 -2.26 6.94 39.99 0.28 -1.98 16 9 C 0.60 23.17 8.02 86.49 0.69 23.86 16 10 O -0.59 -27.16 17.59 -4.28 -0.08 -27.24 16 11 N -0.64 -23.45 3.62 -843.89 -3.05 -26.50 16 12 C 0.12 4.92 8.23 86.49 0.71 5.63 16 13 C 0.19 7.87 1.05 -10.89 -0.01 7.86 16 14 O -0.56 -23.73 13.35 -148.98 -1.99 -25.72 16 15 C -0.55 -26.66 9.20 25.60 0.24 -26.42 16 16 H 0.06 3.03 8.06 -2.91 -0.02 3.00 16 17 C 0.03 1.37 5.47 84.65 0.46 1.84 16 18 N -0.92 -49.73 13.96 21.45 0.30 -49.44 16 19 Si 0.92 33.72 24.31 68.60 1.67 35.38 16 20 H -0.26 -9.56 7.05 99.48 0.70 -8.86 16 21 H -0.28 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.22 -6.60 5.16 99.48 0.51 -6.08 16 23 C 0.07 2.15 5.84 86.41 0.50 2.66 16 24 C -0.07 -2.19 10.37 22.63 0.23 -1.95 16 25 H 0.11 0.14 6.44 -2.39 -0.02 0.13 16 26 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.25 0.07 7.03 -2.91 -0.02 0.05 16 29 H 0.11 3.96 8.09 -2.38 -0.02 3.94 16 30 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.36 13.84 3.57 -74.06 -0.26 13.57 16 32 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.09 2.44 5.17 -2.39 -0.01 2.42 16 34 H 0.12 3.47 8.09 -2.39 -0.02 3.45 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -75.83 298.56 0.77 -75.06 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.17 Total: 30.93 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 4.87 Total: 15.84 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -3.81 Total: -87.45 kcal Atomic # 8 Polarization: -67.63 SS G_CDS: -2.12 Total: -69.75 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 1.67 Total: 35.38 kcal Total: -75.83 0.77 -75.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320483388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.289 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds