Wall clock time and date at job start Mon Mar 30 2020 23:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39898 * 109.46831 * 2 1 4 4 F 1.39898 * 109.47149 * 240.00493 * 2 1 3 5 5 C 1.52997 * 109.47388 * 119.99846 * 2 1 3 6 6 C 1.50702 * 115.54686 * 65.21382 * 5 2 1 7 7 O 1.20826 * 120.00377 * 245.77013 * 6 5 2 8 8 O 1.34229 * 120.00089 * 65.76604 * 6 5 2 9 9 C 1.45205 * 117.00270 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47116 * 180.02562 * 9 8 6 11 11 O 1.42898 * 109.47661 * 64.99890 * 10 9 8 12 12 C 1.42901 * 114.00251 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46914 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00327 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99614 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00065 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99499 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46861 * 90.00739 * 17 15 13 19 19 H 1.48504 * 109.46847 * 210.00004 * 17 15 13 20 20 H 1.48491 * 109.47756 * 330.00437 * 17 15 13 21 21 C 1.52999 * 117.50085 * 210.88465 * 5 2 1 22 22 C 1.52994 * 117.50158 * 279.54744 * 5 2 1 23 23 H 1.08998 * 109.47277 * 301.73409 * 1 2 3 24 24 H 1.08995 * 109.47277 * 61.73708 * 1 2 3 25 25 H 1.09000 * 109.47206 * 181.73126 * 1 2 3 26 26 H 1.08997 * 109.47049 * 60.00012 * 9 8 6 27 27 H 1.08999 * 109.46960 * 300.00023 * 9 8 6 28 28 H 1.09001 * 109.47022 * 185.00216 * 10 9 8 29 29 H 1.09003 * 109.46937 * 304.99494 * 10 9 8 30 30 H 1.08996 * 109.47169 * 300.00290 * 12 11 10 31 31 H 1.09004 * 109.46771 * 59.99977 * 12 11 10 32 32 H 0.97004 * 119.99847 * 179.97438 * 16 15 13 33 33 H 1.08997 * 117.49641 * 215.00545 * 21 5 2 34 34 H 1.08991 * 117.49893 * 0.02562 * 21 5 2 35 35 H 1.09000 * 117.49557 * 359.97187 * 22 5 2 36 36 H 1.09000 * 117.49925 * 144.96795 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 1.7193 -2.1916 1.3272 7 8 0.9763 -2.6032 2.1866 8 8 2.2589 -3.0442 0.4420 9 6 1.9061 -4.4462 0.5775 10 6 2.6122 -5.2572 -0.5109 11 8 4.0252 -5.2014 -0.3056 12 6 4.7824 -5.9313 -1.2730 13 6 6.2514 -5.8035 -0.9617 14 1 6.5744 -5.2233 -0.1099 15 6 7.1829 -6.4281 -1.7637 16 7 6.7896 -7.1350 -2.8006 17 14 9.0038 -6.2690 -1.3781 18 1 9.4152 -7.3690 -0.4692 19 1 9.7854 -6.3497 -2.6382 20 1 9.2583 -4.9622 -0.7206 21 6 3.3736 -0.2568 1.8381 22 6 2.0634 0.0673 2.5601 23 1 -0.3634 0.5405 0.8740 24 1 -0.3633 0.4866 -0.9051 25 1 -0.3634 -1.0272 0.0310 26 1 0.8272 -4.5609 0.4744 27 1 2.2177 -4.8060 1.5581 28 1 2.2790 -6.2941 -0.4650 29 1 2.3703 -4.8408 -1.4888 30 1 4.4943 -6.9820 -1.2426 31 1 4.5857 -5.5292 -2.2669 32 1 7.4450 -7.5741 -3.3650 33 1 4.0190 -1.0148 2.2819 34 1 3.8874 0.5628 1.3358 35 1 1.7158 1.1000 2.5325 36 1 1.8463 -0.4774 3.4790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328062143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:40:48 Heat of formation + Delta-G solvation = -209.589302 kcal Electronic energy + Delta-G solvation = -22106.790743 eV Core-core repulsion = 18228.135735 eV Total energy + Delta-G solvation = -3878.655008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.18208 -47.15436 -40.68246 -37.78447 -36.75562 -35.98952 -32.76947 -31.60706 -30.21027 -27.02578 -25.77269 -23.57365 -22.84890 -22.39953 -21.88013 -20.12124 -18.39438 -17.66600 -17.12826 -16.59090 -16.42360 -16.29613 -15.81960 -15.22663 -14.75133 -14.47907 -14.29033 -13.99226 -13.67364 -13.50925 -13.33149 -13.00004 -12.83847 -12.77915 -12.44422 -12.10503 -11.89881 -11.84188 -11.44696 -11.09524 -10.93424 -10.84993 -10.78849 -10.69395 -10.48358 -10.43144 -10.05253 -9.13086 -8.87852 -8.21352 -6.11614 -4.13222 1.92187 2.42745 3.09720 3.30449 3.35404 3.36393 3.41053 3.78929 3.94277 4.20911 4.32213 4.41922 4.56418 4.64301 4.72260 5.09578 5.15836 5.20579 5.25110 5.27007 5.35928 5.40740 5.51329 5.54860 5.71817 5.82953 5.89482 6.05693 6.44198 7.05432 7.40197 7.67328 7.78197 8.12566 8.52042 8.98959 9.51452 11.00001 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.003993 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.664459 B = 7010.801593 C = 7377.509472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.335 3.665 3 F -0.192 7.192 4 F -0.180 7.180 5 C -0.202 4.202 6 C 0.505 3.495 7 O -0.502 6.502 8 O -0.324 6.324 9 C 0.073 3.927 10 C 0.062 3.938 11 O -0.391 6.391 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.066 0.934 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.133 4.133 22 C -0.124 4.124 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.006 0.994 31 H 0.008 0.992 32 H 0.264 0.736 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 14.727 7.700 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.299 3.701 3 F -0.173 7.173 4 F -0.161 7.161 5 C -0.204 4.204 6 C 0.347 3.653 7 O -0.390 6.390 8 O -0.239 6.239 9 C -0.001 4.001 10 C -0.016 4.016 11 O -0.311 6.311 12 C 0.120 3.880 13 C -0.553 4.553 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.170 4.170 22 C -0.161 4.161 23 H 0.112 0.888 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.690 14.557 7.893 21.486 hybrid contribution 0.834 -0.350 -0.323 0.960 sum -12.856 14.207 7.570 20.602 Atomic orbital electron populations 1.22750 0.90739 1.05720 1.05645 1.19952 0.93507 0.74897 0.81757 1.93010 1.90648 1.36923 1.96680 1.93128 1.90427 1.80642 1.51909 1.21876 1.09584 0.91085 0.97857 1.21705 0.77140 0.87295 0.79174 1.90657 1.34293 1.78767 1.35334 1.86669 1.65540 1.19728 1.51928 1.23318 0.99020 0.76311 1.01425 1.22314 0.85661 0.97085 0.96543 1.87912 1.13625 1.74805 1.54717 1.20244 0.90728 0.90152 0.86848 1.21040 0.89716 1.31725 1.12805 0.91539 1.24943 0.99723 0.94996 0.94786 1.69960 1.34573 1.32965 1.16285 0.86329 0.83709 0.78699 0.77720 1.20468 1.21038 1.19595 1.23268 0.89451 1.03603 1.00664 1.23211 0.99842 1.00419 0.92632 0.88842 0.89317 0.89460 0.90269 0.90320 0.91805 0.93028 0.97610 0.97430 0.92628 0.86604 0.86279 0.86527 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 9.27 37.16 0.34 -1.32 16 2 C 0.34 3.93 2.08 -26.73 -0.06 3.87 16 3 F -0.19 -2.16 15.65 2.25 0.04 -2.13 16 4 F -0.18 -2.69 16.52 2.25 0.04 -2.66 16 5 C -0.20 -2.45 1.80 -155.66 -0.28 -2.73 16 6 C 0.51 7.58 6.45 36.01 0.23 7.81 16 7 O -0.50 -7.97 16.45 -18.75 -0.31 -8.28 16 8 O -0.32 -5.60 9.79 -42.02 -0.41 -6.01 16 9 C 0.07 1.16 5.85 37.16 0.22 1.38 16 10 C 0.06 1.14 6.33 37.16 0.24 1.38 16 11 O -0.39 -9.57 10.30 -38.79 -0.40 -9.97 16 12 C 0.19 5.37 5.69 36.01 0.20 5.58 16 13 C -0.51 -15.30 9.43 -34.44 -0.32 -15.63 16 14 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 17 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.13 -1.41 9.66 -26.69 -0.26 -1.67 16 22 C -0.12 -1.11 9.52 -26.70 -0.25 -1.36 16 23 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.80 7.66 -51.93 -0.40 0.41 16 26 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.12 1.15 7.63 -51.93 -0.40 0.75 16 35 H 0.12 0.79 7.94 -51.93 -0.41 0.38 16 36 H 0.12 1.02 8.00 -51.93 -0.42 0.61 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -33.53 325.00 -5.44 -38.97 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -4.97 Total: -4.38 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.04 Total: -1.15 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.12 Total: -24.26 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.07 Total: -4.78 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.53 -5.44 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328062143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.617 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds