Wall clock time and date at job start Tue Mar 31 2020 01:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34734 * 116.99476 * 2 1 4 4 O 1.21473 * 120.00548 * 359.97438 * 3 2 1 5 5 C 1.47700 * 119.99619 * 179.97438 * 3 2 1 6 6 N 1.32886 * 119.79645 * 353.64682 * 5 3 2 7 7 C 1.31354 * 121.70513 * 179.97438 * 6 5 3 8 8 C 1.38811 * 121.10657 * 359.97438 * 7 6 5 9 9 C 1.38252 * 119.46997 * 0.02562 * 8 7 6 10 10 C 1.39499 * 118.42745 * 0.25113 * 9 8 7 11 11 N 1.39243 * 120.55760 * 179.72128 * 10 9 8 12 12 C 1.34774 * 119.99726 * 332.39613 * 11 10 9 13 13 O 1.21272 * 120.00639 * 4.10349 * 12 11 10 14 14 C 1.50707 * 119.99539 * 184.10487 * 12 11 10 15 15 H 1.09003 * 109.47183 * 60.00053 * 14 12 11 16 16 C 1.53000 * 109.47102 * 300.00060 * 14 12 11 17 17 C 1.50701 * 109.46840 * 179.97438 * 14 12 11 18 18 H 1.07997 * 120.00307 * 359.97438 * 17 14 12 19 19 C 1.37875 * 119.99787 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99986 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00054 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47137 * 60.00025 * 21 19 17 23 23 H 1.48501 * 109.47110 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47056 * 299.99811 * 21 19 17 25 25 H 1.09008 * 109.47111 * 60.00563 * 1 2 3 26 26 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47737 * 300.00562 * 1 2 3 28 28 H 1.08001 * 119.44559 * 179.97438 * 7 6 5 29 29 H 1.08002 * 120.26508 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.78807 * 179.97438 * 9 8 7 31 31 H 0.96995 * 119.99663 * 152.39364 * 11 10 9 32 32 H 1.08998 * 109.47098 * 59.99896 * 16 14 12 33 33 H 1.09001 * 109.47311 * 180.02562 * 16 14 12 34 34 H 1.09003 * 109.47096 * 300.00047 * 16 14 12 35 35 H 0.97004 * 120.00007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2005 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5385 1.2779 0.0006 6 7 4.2579 0.1680 0.1287 7 6 5.5712 0.1932 0.1336 8 6 6.2660 1.3879 0.0037 9 6 5.5644 2.5714 -0.1325 10 6 4.1703 2.5211 -0.1291 11 7 3.4196 3.6868 -0.2575 12 6 3.9267 4.8641 0.1587 13 8 5.0639 4.9210 0.5761 14 6 3.0803 6.1099 0.1055 15 1 2.1924 5.9727 0.7226 16 6 2.6596 6.3792 -1.3407 17 6 3.8759 7.2801 0.6240 18 1 4.8924 7.1361 0.9590 19 6 3.3059 8.5347 0.6707 20 7 2.0678 8.7100 0.2632 21 14 4.2917 9.9851 1.3141 22 1 5.5024 10.1721 0.4746 23 1 3.4578 11.2127 1.2615 24 1 4.6984 9.7233 2.7181 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 6.1196 -0.7310 0.2404 29 1 7.3460 1.3929 0.0091 30 1 6.0833 3.5130 -0.2346 31 1 2.5318 3.6514 -0.6466 32 1 2.0841 5.5327 -1.7153 33 1 2.0479 7.2806 -1.3793 34 1 3.5475 6.5165 -1.9578 35 1 1.6669 9.5928 0.2957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331194816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:42 Heat of formation + Delta-G solvation = -75.642505 kcal Electronic energy + Delta-G solvation = -21467.250085 eV Core-core repulsion = 18045.092633 eV Total energy + Delta-G solvation = -3422.157452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15961 -39.79525 -38.77951 -36.60345 -34.58306 -33.92854 -32.37682 -31.03228 -29.65793 -27.84352 -25.23461 -24.74767 -24.07077 -22.22075 -21.45852 -19.56355 -18.23233 -17.75583 -17.16055 -16.55827 -16.36476 -16.00835 -15.55716 -15.14325 -14.64988 -14.35298 -13.92001 -13.83063 -13.29581 -13.09133 -12.96633 -12.78080 -12.52105 -12.11576 -11.69143 -11.07436 -10.96810 -10.85780 -10.79460 -10.76123 -10.61562 -10.34280 -10.05342 -9.84564 -9.67987 -9.08415 -8.72925 -8.41794 -8.14147 -6.09390 -4.14334 0.50287 1.26383 2.39140 2.54360 3.29921 3.32932 3.35477 3.38379 3.50051 3.87658 4.17703 4.41052 4.76529 4.80254 5.02575 5.06272 5.11523 5.15099 5.23730 5.32963 5.45241 5.90646 6.01322 6.15888 6.20830 6.43018 6.54815 6.73530 6.80125 6.90215 7.36829 7.48856 7.66312 7.80947 7.86828 7.98935 8.22014 8.80532 8.93697 9.51231 10.98071 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021907 B = 0.004955 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.830418 B = 5649.566758 C = 6683.193349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.529 3.471 4 O -0.500 6.500 5 C 0.023 3.977 6 N -0.415 5.415 7 C 0.059 3.941 8 C -0.114 4.114 9 C -0.109 4.109 10 C 0.195 3.805 11 N -0.666 5.666 12 C 0.521 3.479 13 O -0.520 6.520 14 C 0.033 3.967 15 H 0.061 0.939 16 C -0.135 4.135 17 C -0.507 4.507 18 H 0.075 0.925 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.173 0.827 31 H 0.423 0.577 32 H 0.014 0.986 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -16.578 -2.925 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.374 3.626 4 O -0.388 6.388 5 C -0.114 4.114 6 N -0.125 5.125 7 C -0.105 4.105 8 C -0.134 4.134 9 C -0.137 4.137 10 C 0.091 3.909 11 N -0.315 5.315 12 C 0.313 3.687 13 O -0.394 6.394 14 C 0.012 3.988 15 H 0.078 0.922 16 C -0.193 4.193 17 C -0.545 4.545 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.180 0.820 29 H 0.162 0.838 30 H 0.190 0.810 31 H 0.267 0.733 32 H 0.033 0.967 33 H 0.116 0.884 34 H 0.053 0.947 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.865 -16.727 -2.553 16.943 hybrid contribution 0.253 1.491 0.117 1.517 sum 1.118 -15.236 -2.436 15.470 Atomic orbital electron populations 1.23342 0.76212 1.03745 1.02830 1.86673 1.23089 1.31630 1.83610 1.20704 0.87665 0.81749 0.72530 1.90753 1.65841 1.35718 1.46453 1.19589 0.90643 0.89370 1.11836 1.67504 1.08557 1.28489 1.07998 1.22674 0.89188 0.98287 1.00401 1.22420 1.01926 0.92671 0.96407 1.22221 0.91727 1.01168 0.98599 1.18879 0.92294 0.86688 0.93051 1.44590 1.21216 1.05253 1.60407 1.22558 0.88452 0.84331 0.73335 1.90457 1.19308 1.85360 1.44325 1.18935 0.95462 0.87939 0.96446 0.92163 1.21783 1.00221 1.01972 0.95358 1.21043 1.00240 0.91152 1.42107 0.90682 1.24950 0.95038 0.98918 0.95180 1.69862 1.12885 1.23280 1.47199 0.86462 0.79790 0.81036 0.79589 1.20132 1.21299 1.20150 0.91675 0.87982 0.91656 0.81979 0.83835 0.81021 0.73295 0.96732 0.88363 0.94743 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.34 -4.65 10.39 -40.58 -0.42 -5.07 16 3 C 0.53 8.49 7.92 34.60 0.27 8.77 16 4 O -0.50 -8.74 13.63 -19.24 -0.26 -9.01 16 5 C 0.02 0.38 6.76 -82.86 -0.56 -0.18 16 6 N -0.41 -6.09 10.12 -9.69 -0.10 -6.19 16 7 C 0.06 0.69 11.17 -17.54 -0.20 0.49 16 8 C -0.11 -1.34 10.10 -39.36 -0.40 -1.74 16 9 C -0.11 -1.72 8.86 -39.11 -0.35 -2.07 16 10 C 0.19 3.39 6.44 -83.34 -0.54 2.85 16 11 N -0.67 -12.80 4.70 -9.59 -0.05 -12.85 16 12 C 0.52 11.77 7.03 -10.98 -0.08 11.69 16 13 O -0.52 -12.52 12.52 5.56 0.07 -12.45 16 14 C 0.03 0.82 2.64 -92.92 -0.25 0.58 16 15 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 16 C -0.14 -3.10 8.87 37.16 0.33 -2.77 16 17 C -0.51 -14.05 8.38 -34.44 -0.29 -14.34 16 18 H 0.08 2.15 6.75 -52.49 -0.35 1.80 16 19 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 20 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 21 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.17 2.97 5.78 -52.49 -0.30 2.67 16 31 H 0.42 7.85 5.45 -40.82 -0.22 7.62 16 32 H 0.01 0.28 7.48 -51.93 -0.39 -0.11 16 33 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -31.16 304.23 -5.32 -36.48 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.68 Total: 6.04 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.07 Total: 6.23 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.48 Total: -43.22 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.61 Total: -26.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.16 -5.32 -36.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331194816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.163 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds