Wall clock time and date at job start Tue Mar 31 2020 01:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34734 * 116.99476 * 2 1 4 4 O 1.21473 * 120.00548 * 359.97438 * 3 2 1 5 5 C 1.47700 * 119.99619 * 179.97438 * 3 2 1 6 6 N 1.32886 * 119.79645 * 353.64682 * 5 3 2 7 7 C 1.31354 * 121.70513 * 179.97438 * 6 5 3 8 8 C 1.38811 * 121.10657 * 359.97438 * 7 6 5 9 9 C 1.38252 * 119.46997 * 0.02562 * 8 7 6 10 10 C 1.39499 * 118.42745 * 0.25113 * 9 8 7 11 11 N 1.39243 * 120.55760 * 179.72128 * 10 9 8 12 12 C 1.34774 * 119.99726 * 332.39613 * 11 10 9 13 13 O 1.21272 * 120.00639 * 4.10349 * 12 11 10 14 14 C 1.50707 * 119.99539 * 184.10487 * 12 11 10 15 15 H 1.09003 * 109.47183 * 60.00053 * 14 12 11 16 16 C 1.53000 * 109.47102 * 300.00060 * 14 12 11 17 17 C 1.50701 * 109.46840 * 179.97438 * 14 12 11 18 18 H 1.07997 * 120.00307 * 359.97438 * 17 14 12 19 19 C 1.37875 * 119.99787 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99986 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00054 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47137 * 60.00025 * 21 19 17 23 23 H 1.48501 * 109.47110 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47056 * 299.99811 * 21 19 17 25 25 H 1.09008 * 109.47111 * 60.00563 * 1 2 3 26 26 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47737 * 300.00562 * 1 2 3 28 28 H 1.08001 * 119.44559 * 179.97438 * 7 6 5 29 29 H 1.08002 * 120.26508 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.78807 * 179.97438 * 9 8 7 31 31 H 0.96995 * 119.99663 * 152.39364 * 11 10 9 32 32 H 1.08998 * 109.47098 * 59.99896 * 16 14 12 33 33 H 1.09001 * 109.47311 * 180.02562 * 16 14 12 34 34 H 1.09003 * 109.47096 * 300.00047 * 16 14 12 35 35 H 0.97004 * 120.00007 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2005 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5385 1.2779 0.0006 6 7 4.2579 0.1680 0.1287 7 6 5.5712 0.1932 0.1336 8 6 6.2660 1.3879 0.0037 9 6 5.5644 2.5714 -0.1325 10 6 4.1703 2.5211 -0.1291 11 7 3.4196 3.6868 -0.2575 12 6 3.9267 4.8641 0.1587 13 8 5.0639 4.9210 0.5761 14 6 3.0803 6.1099 0.1055 15 1 2.1924 5.9727 0.7226 16 6 2.6596 6.3792 -1.3407 17 6 3.8759 7.2801 0.6240 18 1 4.8924 7.1361 0.9590 19 6 3.3059 8.5347 0.6707 20 7 2.0678 8.7100 0.2632 21 14 4.2917 9.9851 1.3141 22 1 5.5024 10.1721 0.4746 23 1 3.4578 11.2127 1.2615 24 1 4.6984 9.7233 2.7181 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 6.1196 -0.7310 0.2404 29 1 7.3460 1.3929 0.0091 30 1 6.0833 3.5130 -0.2346 31 1 2.5318 3.6514 -0.6466 32 1 2.0841 5.5327 -1.7153 33 1 2.0479 7.2806 -1.3793 34 1 3.5475 6.5165 -1.9578 35 1 1.6669 9.5928 0.2957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331194816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:41 Heat of formation + Delta-G solvation = -96.247808 kcal Electronic energy + Delta-G solvation = -21468.143598 eV Core-core repulsion = 18045.092633 eV Total energy + Delta-G solvation = -3423.050965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42255 -41.10126 -40.17895 -37.77723 -36.09691 -35.87617 -33.53659 -32.81348 -31.10443 -28.76849 -27.27866 -25.86822 -25.53186 -23.80912 -22.61997 -21.21136 -19.39456 -19.15473 -18.43770 -18.20181 -17.75113 -17.52760 -16.96102 -16.54307 -16.19862 -15.82564 -15.29813 -15.11138 -14.69550 -14.56254 -14.26467 -14.15704 -13.69256 -13.58664 -13.00091 -12.98068 -12.79368 -12.65680 -12.37524 -12.16521 -12.04119 -11.86821 -11.84729 -11.16077 -11.09291 -10.80659 -10.57254 -10.25248 -9.48432 -8.17905 -6.30385 -0.66577 0.10229 1.22763 1.42090 1.43731 1.47970 1.51992 1.63310 2.00053 2.43882 2.71584 3.11947 3.12891 3.61675 3.69442 3.94004 4.05318 4.24367 4.33065 4.34091 4.39561 4.63929 4.69681 4.83710 4.85500 4.91923 5.07467 5.10895 5.21243 5.39598 5.61082 5.67691 5.85299 6.08692 6.34799 6.42623 6.74842 6.77606 7.10603 7.38569 8.88246 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021907 B = 0.004955 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.830418 B = 5649.566758 C = 6683.193349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.337 6.337 3 C 0.527 3.473 4 O -0.524 6.524 5 C 0.016 3.984 6 N -0.427 5.427 7 C 0.076 3.924 8 C -0.090 4.090 9 C -0.127 4.127 10 C 0.162 3.838 11 N -0.659 5.659 12 C 0.525 3.475 13 O -0.544 6.544 14 C 0.028 3.972 15 H 0.039 0.961 16 C -0.122 4.122 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.276 1.276 25 H 0.067 0.933 26 H 0.138 0.862 27 H 0.062 0.938 28 H 0.213 0.787 29 H 0.188 0.812 30 H 0.153 0.847 31 H 0.424 0.576 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.242 -18.633 -2.999 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.252 6.252 3 C 0.372 3.628 4 O -0.414 6.414 5 C -0.120 4.120 6 N -0.138 5.138 7 C -0.088 4.088 8 C -0.110 4.110 9 C -0.155 4.155 10 C 0.060 3.940 11 N -0.308 5.308 12 C 0.317 3.683 13 O -0.420 6.420 14 C 0.007 3.993 15 H 0.057 0.943 16 C -0.180 4.180 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.201 1.201 25 H 0.086 0.914 26 H 0.156 0.844 27 H 0.081 0.919 28 H 0.229 0.771 29 H 0.205 0.795 30 H 0.170 0.830 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.055 -18.843 -2.640 19.137 hybrid contribution -0.090 1.912 0.140 1.919 sum 1.966 -16.931 -2.500 17.227 Atomic orbital electron populations 1.23697 0.74059 1.06169 1.02886 1.86656 1.25201 1.30363 1.82978 1.20823 0.87865 0.82039 0.72069 1.90730 1.66377 1.36572 1.47744 1.19609 0.91032 0.89322 1.12051 1.67618 1.10032 1.27520 1.08625 1.23564 0.88282 1.00033 0.96921 1.22879 1.03944 0.90972 0.93236 1.22213 0.91275 1.02147 0.99823 1.19090 0.93026 0.86239 0.95610 1.44175 1.21263 1.05112 1.60258 1.21948 0.87826 0.84854 0.73688 1.90439 1.19896 1.85946 1.45737 1.18831 0.94728 0.88825 0.96949 0.94345 1.21592 1.00036 1.02040 0.94365 1.21210 0.99932 0.92723 1.43038 0.92363 1.25664 0.96019 1.01133 0.95226 1.69963 1.13815 1.23910 1.47389 0.85548 0.78644 0.78231 0.78841 1.19682 1.20172 1.20124 0.91382 0.84360 0.91920 0.77087 0.79494 0.82990 0.73215 0.93960 0.90515 0.94827 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.56 113.37 1.20 1.65 16 2 O -0.34 -8.99 10.39 -56.44 -0.59 -9.58 16 3 C 0.53 16.83 7.92 70.32 0.56 17.38 16 4 O -0.52 -18.72 13.63 19.92 0.27 -18.45 16 5 C 0.02 0.51 6.76 41.93 0.28 0.80 16 6 N -0.43 -11.46 10.12 -184.57 -1.87 -13.33 16 7 C 0.08 1.45 11.17 84.90 0.95 2.40 16 8 C -0.09 -1.81 10.10 22.41 0.23 -1.59 16 9 C -0.13 -3.89 8.86 22.58 0.20 -3.69 16 10 C 0.16 5.66 6.44 38.71 0.25 5.91 16 11 N -0.66 -26.12 4.70 -302.65 -1.42 -27.54 16 12 C 0.53 24.64 7.03 87.66 0.62 25.25 16 13 O -0.54 -27.13 12.52 -3.01 -0.04 -27.16 16 14 C 0.03 1.44 2.64 -12.28 -0.03 1.40 16 15 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.12 -5.75 8.87 71.98 0.64 -5.11 16 17 C -0.53 -30.36 8.38 25.60 0.21 -30.15 16 18 H 0.06 3.46 6.75 -2.91 -0.02 3.45 16 19 C 0.02 1.06 5.30 84.65 0.45 1.51 16 20 N -0.91 -51.50 11.32 21.45 0.24 -51.26 16 21 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.21 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.15 5.33 5.78 -2.91 -0.02 5.32 16 31 H 0.42 16.27 5.45 -92.71 -0.51 15.76 16 32 H 0.04 1.69 7.48 -2.39 -0.02 1.67 16 33 H 0.08 3.95 6.07 -2.39 -0.01 3.93 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -69.85 304.23 4.81 -65.04 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.63 Total: 20.14 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 5.55 Total: 15.77 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.05 Total: -92.13 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -0.35 Total: -55.19 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -69.85 4.81 -65.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331194816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.207 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds