Wall clock time and date at job start Tue Mar 31 2020 01:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34730 * 116.99903 * 2 1 4 4 O 1.21470 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.47696 * 119.99741 * 180.02562 * 3 2 1 6 6 N 1.32881 * 119.79889 * 355.05705 * 5 3 2 7 7 C 1.31363 * 121.70895 * 179.97438 * 6 5 3 8 8 C 1.38813 * 121.10443 * 0.02562 * 7 6 5 9 9 C 1.38256 * 119.46746 * 359.97438 * 8 7 6 10 10 C 1.39492 * 118.43079 * 0.02562 * 9 8 7 11 11 N 1.39237 * 120.56170 * 180.02562 * 10 9 8 12 12 C 1.34777 * 119.99465 * 34.87338 * 11 10 9 13 13 O 1.21267 * 120.00218 * 5.29779 * 12 11 10 14 14 C 1.50709 * 119.99650 * 185.29295 * 12 11 10 15 15 H 1.08996 * 109.46871 * 299.99959 * 14 12 11 16 16 C 1.52996 * 109.46973 * 60.00324 * 14 12 11 17 17 C 1.50696 * 109.46832 * 180.02562 * 14 12 11 18 18 H 1.08004 * 120.00581 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00107 * 180.02562 * 17 14 12 20 20 N 1.31522 * 119.99592 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00365 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47005 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47381 * 119.99867 * 21 19 17 24 24 H 1.48502 * 109.47188 * 239.99906 * 21 19 17 25 25 H 1.09005 * 109.46748 * 299.99618 * 1 2 3 26 26 H 1.08996 * 109.46973 * 59.99604 * 1 2 3 27 27 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.44232 * 179.72093 * 7 6 5 29 29 H 1.07999 * 120.26545 * 179.97438 * 8 7 6 30 30 H 1.08005 * 120.78223 * 179.97438 * 9 8 7 31 31 H 0.96996 * 120.00237 * 214.88220 * 11 10 9 32 32 H 1.09004 * 109.46742 * 179.97438 * 16 14 12 33 33 H 1.08996 * 109.47472 * 299.99687 * 16 14 12 34 34 H 1.08996 * 109.47619 * 60.00094 * 16 14 12 35 35 H 0.97005 * 119.99810 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4021 2.2192 0.0005 5 6 3.5386 1.2777 -0.0006 6 7 4.2582 0.1650 0.0983 7 6 5.5716 0.1901 0.1010 8 6 6.2662 1.3877 0.0007 9 6 5.5643 2.5742 -0.1045 10 6 4.1703 2.5234 -0.1053 11 7 3.4194 3.6913 -0.2096 12 6 3.8649 4.7135 -0.9666 13 8 4.8697 4.5818 -1.6327 14 6 3.1143 6.0202 -0.9854 15 1 2.0987 5.8507 -1.3431 16 6 3.0665 6.6013 0.4291 17 6 3.8146 6.9886 -1.9034 18 1 4.7136 6.6881 -2.4211 19 6 3.3083 8.2586 -2.0816 20 7 2.2139 8.6247 -1.4508 21 14 4.1768 9.4592 -3.2190 22 1 5.3767 8.8080 -3.8031 23 1 3.2533 9.8650 -4.3088 24 1 4.5910 10.6594 -2.4487 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 6.1200 -0.7362 0.1877 29 1 7.3461 1.3926 0.0047 30 1 6.0831 3.5182 -0.1833 31 1 2.5757 3.7693 0.2627 32 1 2.5240 7.5466 0.4154 33 1 2.5597 5.9007 1.0928 34 1 4.0820 6.7708 0.7868 35 1 1.8575 9.5181 -1.5764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331194817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:46 Heat of formation + Delta-G solvation = -78.236719 kcal Electronic energy + Delta-G solvation = -21463.840361 eV Core-core repulsion = 18041.570415 eV Total energy + Delta-G solvation = -3422.269946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13952 -39.76937 -38.76191 -36.58714 -34.57956 -33.89165 -32.41508 -31.00633 -29.67025 -27.84335 -25.22425 -24.76202 -24.09242 -22.16592 -21.46491 -19.55786 -18.24389 -17.72699 -17.15103 -16.49162 -16.38385 -15.99194 -15.68625 -15.15559 -14.59164 -14.28868 -13.93690 -13.84137 -13.30062 -13.08024 -12.96825 -12.77957 -12.50884 -12.11883 -11.71437 -11.10114 -10.93094 -10.84991 -10.77081 -10.73911 -10.58675 -10.33749 -10.04845 -9.82344 -9.68776 -9.05379 -8.80552 -8.43041 -8.17083 -6.09367 -4.13872 0.48448 1.21943 2.39225 2.54579 3.28645 3.34706 3.36417 3.41655 3.52076 3.86143 4.15696 4.41576 4.74553 4.79609 4.99412 5.03092 5.12001 5.13971 5.24022 5.30635 5.45202 5.89758 6.00786 6.09413 6.18119 6.41308 6.55929 6.74671 6.80094 6.91776 7.37480 7.48308 7.66572 7.82676 7.85590 8.00388 8.23549 8.84527 8.95154 9.51847 10.98235 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.004930 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.226306 B = 5677.630370 C = 6600.367499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.530 3.470 4 O -0.500 6.500 5 C 0.029 3.971 6 N -0.416 5.416 7 C 0.063 3.937 8 C -0.114 4.114 9 C -0.097 4.097 10 C 0.196 3.804 11 N -0.672 5.672 12 C 0.520 3.480 13 O -0.521 6.521 14 C 0.032 3.968 15 H 0.059 0.941 16 C -0.134 4.134 17 C -0.505 4.505 18 H 0.076 0.924 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.424 0.576 32 H 0.097 0.903 33 H 0.014 0.986 34 H 0.033 0.967 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -15.850 6.078 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.374 3.626 4 O -0.387 6.387 5 C -0.108 4.108 6 N -0.127 5.127 7 C -0.101 4.101 8 C -0.135 4.135 9 C -0.125 4.125 10 C 0.093 3.907 11 N -0.322 5.322 12 C 0.312 3.688 13 O -0.395 6.395 14 C 0.011 3.989 15 H 0.077 0.923 16 C -0.192 4.192 17 C -0.543 4.543 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.729 3.271 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.181 0.819 29 H 0.162 0.838 30 H 0.175 0.825 31 H 0.267 0.733 32 H 0.116 0.884 33 H 0.033 0.967 34 H 0.052 0.948 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.095 -16.132 5.662 17.132 hybrid contribution 0.221 1.481 -0.438 1.560 sum 1.316 -14.651 5.224 15.610 Atomic orbital electron populations 1.23340 0.76197 1.03743 1.02815 1.86669 1.23098 1.31619 1.83640 1.20661 0.87632 0.81752 0.72578 1.90746 1.65828 1.35771 1.46367 1.19679 0.90730 0.88745 1.11682 1.67520 1.08537 1.28523 1.08107 1.22689 0.89181 0.98270 0.99956 1.22367 1.01918 0.92676 0.96499 1.21759 0.91761 1.00729 0.98225 1.18775 0.92154 0.86734 0.93002 1.44587 1.25636 1.12642 1.49320 1.22533 0.85226 0.85411 0.75618 1.90542 1.26011 1.82199 1.40755 1.18932 0.96794 0.86546 0.96608 0.92300 1.21767 1.00199 1.02947 0.94296 1.21132 1.11388 0.96282 1.25520 0.90605 1.24955 0.94998 0.98154 0.96049 1.69885 1.21133 1.19755 1.42483 0.86363 0.79728 0.80555 0.80409 1.19543 1.20979 1.20977 0.91697 0.91651 0.87980 0.81871 0.83770 0.82546 0.73273 0.88425 0.96684 0.94808 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 101.05 1.07 1.40 16 2 O -0.34 -4.69 10.39 -40.57 -0.42 -5.12 16 3 C 0.53 8.54 7.93 34.59 0.27 8.81 16 4 O -0.50 -8.73 13.66 -19.24 -0.26 -8.99 16 5 C 0.03 0.47 6.76 -82.87 -0.56 -0.09 16 6 N -0.42 -6.06 10.12 -9.69 -0.10 -6.16 16 7 C 0.06 0.72 11.17 -17.54 -0.20 0.53 16 8 C -0.11 -1.32 10.10 -39.36 -0.40 -1.71 16 9 C -0.10 -1.49 8.75 -39.11 -0.34 -1.83 16 10 C 0.20 3.39 6.27 -83.34 -0.52 2.87 16 11 N -0.67 -12.88 4.54 -9.59 -0.04 -12.92 16 12 C 0.52 11.81 6.89 -10.98 -0.08 11.74 16 13 O -0.52 -12.84 13.29 5.57 0.07 -12.76 16 14 C 0.03 0.80 2.63 -92.92 -0.24 0.56 16 15 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 17 C -0.50 -14.05 8.38 -34.44 -0.29 -14.33 16 18 H 0.08 2.20 6.75 -52.48 -0.35 1.85 16 19 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 20 N -0.89 -24.84 11.32 55.43 0.63 -24.22 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.16 2.60 6.64 -52.48 -0.35 2.25 16 31 H 0.42 7.81 5.90 -40.82 -0.24 7.57 16 32 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 33 H 0.01 0.28 7.69 -51.93 -0.40 -0.12 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -31.69 305.97 -5.34 -37.02 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.75 Total: 5.35 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.05 Total: 6.73 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.49 Total: -43.30 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.61 Total: -26.87 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.69 -5.34 -37.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331194817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.214 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds