Wall clock time and date at job start Tue Mar 31 2020 01:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34730 * 116.99903 * 2 1 4 4 O 1.21470 * 119.99923 * 0.02562 * 3 2 1 5 5 C 1.47696 * 119.99741 * 180.02562 * 3 2 1 6 6 N 1.32881 * 119.79889 * 355.05705 * 5 3 2 7 7 C 1.31363 * 121.70895 * 179.97438 * 6 5 3 8 8 C 1.38813 * 121.10443 * 0.02562 * 7 6 5 9 9 C 1.38256 * 119.46746 * 359.97438 * 8 7 6 10 10 C 1.39492 * 118.43079 * 0.02562 * 9 8 7 11 11 N 1.39237 * 120.56170 * 180.02562 * 10 9 8 12 12 C 1.34777 * 119.99465 * 34.87338 * 11 10 9 13 13 O 1.21267 * 120.00218 * 5.29779 * 12 11 10 14 14 C 1.50709 * 119.99650 * 185.29295 * 12 11 10 15 15 H 1.08996 * 109.46871 * 299.99959 * 14 12 11 16 16 C 1.52996 * 109.46973 * 60.00324 * 14 12 11 17 17 C 1.50696 * 109.46832 * 180.02562 * 14 12 11 18 18 H 1.08004 * 120.00581 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00107 * 180.02562 * 17 14 12 20 20 N 1.31522 * 119.99592 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00365 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47005 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47381 * 119.99867 * 21 19 17 24 24 H 1.48502 * 109.47188 * 239.99906 * 21 19 17 25 25 H 1.09005 * 109.46748 * 299.99618 * 1 2 3 26 26 H 1.08996 * 109.46973 * 59.99604 * 1 2 3 27 27 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.44232 * 179.72093 * 7 6 5 29 29 H 1.07999 * 120.26545 * 179.97438 * 8 7 6 30 30 H 1.08005 * 120.78223 * 179.97438 * 9 8 7 31 31 H 0.96996 * 120.00237 * 214.88220 * 11 10 9 32 32 H 1.09004 * 109.46742 * 179.97438 * 16 14 12 33 33 H 1.08996 * 109.47472 * 299.99687 * 16 14 12 34 34 H 1.08996 * 109.47619 * 60.00094 * 16 14 12 35 35 H 0.97005 * 119.99810 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4021 2.2192 0.0005 5 6 3.5386 1.2777 -0.0006 6 7 4.2582 0.1650 0.0983 7 6 5.5716 0.1901 0.1010 8 6 6.2662 1.3877 0.0007 9 6 5.5643 2.5742 -0.1045 10 6 4.1703 2.5234 -0.1053 11 7 3.4194 3.6913 -0.2096 12 6 3.8649 4.7135 -0.9666 13 8 4.8697 4.5818 -1.6327 14 6 3.1143 6.0202 -0.9854 15 1 2.0987 5.8507 -1.3431 16 6 3.0665 6.6013 0.4291 17 6 3.8146 6.9886 -1.9034 18 1 4.7136 6.6881 -2.4211 19 6 3.3083 8.2586 -2.0816 20 7 2.2139 8.6247 -1.4508 21 14 4.1768 9.4592 -3.2190 22 1 5.3767 8.8080 -3.8031 23 1 3.2533 9.8650 -4.3088 24 1 4.5910 10.6594 -2.4487 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 6.1200 -0.7362 0.1877 29 1 7.3461 1.3926 0.0047 30 1 6.0831 3.5182 -0.1833 31 1 2.5757 3.7693 0.2627 32 1 2.5240 7.5466 0.4154 33 1 2.5597 5.9007 1.0928 34 1 4.0820 6.7708 0.7868 35 1 1.8575 9.5181 -1.5764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331194817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:45 Heat of formation + Delta-G solvation = -99.369845 kcal Electronic energy + Delta-G solvation = -21464.756762 eV Core-core repulsion = 18041.570415 eV Total energy + Delta-G solvation = -3423.186347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.39011 -41.07006 -40.18439 -37.76556 -36.09302 -35.85824 -33.54587 -32.80510 -31.10974 -28.77498 -27.27494 -25.87061 -25.55026 -23.75695 -22.62140 -21.20752 -19.39427 -19.13892 -18.38109 -18.19098 -17.72456 -17.59578 -17.06093 -16.50062 -16.18848 -15.81893 -15.23158 -15.12934 -14.69260 -14.55897 -14.26280 -14.15116 -13.69842 -13.60573 -13.01309 -13.00161 -12.76723 -12.65205 -12.35002 -12.15518 -12.04381 -11.87081 -11.82848 -11.13259 -11.06174 -10.82695 -10.58584 -10.34342 -9.52001 -8.18569 -6.30635 -0.67218 0.07395 1.23402 1.39852 1.41685 1.48147 1.54854 1.65974 2.01559 2.43745 2.70867 3.11286 3.11688 3.61339 3.70332 3.92911 4.01392 4.24443 4.32345 4.34262 4.38176 4.65284 4.68723 4.83637 4.85843 4.91964 5.04114 5.08827 5.23220 5.40230 5.58765 5.67801 5.85643 6.09437 6.35210 6.43623 6.74217 6.77951 7.13367 7.38611 8.88002 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.004930 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.226306 B = 5677.630370 C = 6600.367499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.526 3.474 4 O -0.524 6.524 5 C 0.021 3.979 6 N -0.429 5.429 7 C 0.080 3.920 8 C -0.090 4.090 9 C -0.114 4.114 10 C 0.162 3.838 11 N -0.663 5.663 12 C 0.526 3.474 13 O -0.549 6.549 14 C 0.027 3.973 15 H 0.039 0.961 16 C -0.121 4.121 17 C -0.529 4.529 18 H 0.056 0.944 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.962 3.038 22 H -0.276 1.276 23 H -0.277 1.277 24 H -0.273 1.273 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.138 0.862 28 H 0.214 0.786 29 H 0.189 0.811 30 H 0.140 0.860 31 H 0.425 0.575 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 -17.793 6.505 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C 0.371 3.629 4 O -0.413 6.413 5 C -0.115 4.115 6 N -0.140 5.140 7 C -0.084 4.084 8 C -0.110 4.110 9 C -0.142 4.142 10 C 0.061 3.939 11 N -0.314 5.314 12 C 0.317 3.683 13 O -0.425 6.425 14 C 0.006 3.994 15 H 0.056 0.944 16 C -0.179 4.179 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.181 4.181 20 N -0.551 5.551 21 Si 0.787 3.213 22 H -0.200 1.200 23 H -0.202 1.202 24 H -0.198 1.198 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.156 0.844 28 H 0.230 0.770 29 H 0.207 0.793 30 H 0.157 0.843 31 H 0.268 0.732 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.302 -18.126 6.120 19.270 hybrid contribution -0.129 1.880 -0.527 1.957 sum 2.174 -16.246 5.593 17.319 Atomic orbital electron populations 1.23689 0.74074 1.06156 1.02844 1.86652 1.25195 1.30415 1.83037 1.20816 0.87899 0.82036 0.72132 1.90721 1.66369 1.36589 1.47642 1.19689 0.91062 0.88775 1.11987 1.67630 1.10052 1.27504 1.08800 1.23593 0.88251 1.00086 0.96432 1.22847 1.03978 0.90952 0.93261 1.21828 0.91228 1.01818 0.99307 1.19000 0.92940 0.86210 0.95705 1.44157 1.25669 1.12768 1.48765 1.21934 0.84678 0.85626 0.76017 1.90510 1.27063 1.82806 1.42167 1.18833 0.95632 0.87830 0.97107 0.94370 1.21573 1.00093 1.02395 0.93803 1.21263 1.11275 0.97560 1.26611 0.92563 1.25659 0.95642 0.99467 0.97286 1.69977 1.21801 1.20256 1.43047 0.85445 0.78514 0.78576 0.78765 1.20033 1.20213 1.19815 0.91297 0.92068 0.84364 0.76956 0.79337 0.84260 0.73168 0.90580 0.93838 0.94878 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.34 -9.16 10.39 -56.40 -0.59 -9.74 16 3 C 0.53 16.94 7.93 70.32 0.56 17.50 16 4 O -0.52 -18.71 13.66 19.93 0.27 -18.44 16 5 C 0.02 0.67 6.76 41.93 0.28 0.95 16 6 N -0.43 -11.44 10.12 -184.57 -1.87 -13.31 16 7 C 0.08 1.50 11.17 84.90 0.95 2.45 16 8 C -0.09 -1.76 10.10 22.41 0.23 -1.54 16 9 C -0.11 -3.42 8.75 22.58 0.20 -3.22 16 10 C 0.16 5.63 6.27 38.71 0.24 5.87 16 11 N -0.66 -26.22 4.54 -302.66 -1.37 -27.60 16 12 C 0.53 24.81 6.89 87.66 0.60 25.41 16 13 O -0.55 -28.03 13.29 -2.99 -0.04 -28.07 16 14 C 0.03 1.40 2.63 -12.29 -0.03 1.37 16 15 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.12 -5.65 8.87 71.98 0.64 -5.01 16 17 C -0.53 -30.40 8.38 25.60 0.21 -30.19 16 18 H 0.06 3.40 6.75 -2.91 -0.02 3.38 16 19 C 0.02 1.05 5.30 84.65 0.45 1.50 16 20 N -0.91 -51.47 11.32 21.45 0.24 -51.22 16 21 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.14 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.14 4.68 6.64 -2.91 -0.02 4.67 16 31 H 0.42 16.23 5.90 -92.71 -0.55 15.68 16 32 H 0.08 3.91 6.07 -2.38 -0.01 3.89 16 33 H 0.04 1.73 7.69 -2.39 -0.02 1.71 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -71.09 305.97 4.79 -66.30 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.59 Total: 18.78 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 5.53 Total: 16.76 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -3.00 Total: -92.13 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -0.35 Total: -56.25 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.09 4.79 -66.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331194817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.067 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds