Wall clock time and date at job start Tue Mar 31 2020 01:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 120.00001 * 2 1 4 4 O 1.21516 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.48226 * 120.00252 * 179.97438 * 3 2 1 6 6 C 1.39651 * 119.65252 * 179.72832 * 5 3 2 7 7 C 1.38539 * 119.24780 * 179.75295 * 6 5 3 8 8 C 1.38585 * 118.55702 * 0.51130 * 7 6 5 9 9 C 1.39618 * 119.24445 * 359.72774 * 8 7 6 10 10 C 1.48126 * 119.66071 * 179.97438 * 9 8 7 11 11 O 1.21427 * 119.99681 * 0.02562 * 10 9 8 12 12 O 1.34670 * 120.00517 * 180.02562 * 10 9 8 13 13 C 1.45196 * 116.99840 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.47632 * 30.00138 * 13 12 10 15 15 C 1.52997 * 109.47250 * 269.99532 * 13 12 10 16 16 C 1.50709 * 109.46767 * 150.00243 * 13 12 10 17 17 H 1.07999 * 119.99630 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99736 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00420 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99696 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47258 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47255 * 119.99784 * 20 18 16 23 23 H 1.48501 * 109.47470 * 239.99790 * 20 18 16 24 24 N 1.32321 * 119.64825 * 0.02562 * 5 3 2 25 25 H 1.09001 * 109.47060 * 60.00485 * 1 2 3 26 26 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47212 * 300.00056 * 1 2 3 28 28 H 0.96997 * 119.99787 * 179.97438 * 2 1 3 29 29 H 1.07994 * 120.37342 * 359.97438 * 6 5 3 30 30 H 1.08008 * 120.72035 * 180.24622 * 7 6 5 31 31 H 1.08004 * 120.37630 * 179.74876 * 8 7 6 32 32 H 1.09002 * 109.47296 * 60.00186 * 15 13 12 33 33 H 1.08997 * 109.47431 * 180.02562 * 15 13 12 34 34 H 1.09004 * 109.47388 * 300.00430 * 15 13 12 35 35 H 0.97000 * 120.00516 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5313 2.2195 0.0005 5 6 3.6212 1.1672 0.0006 6 6 4.3120 2.3809 -0.0052 7 6 5.6974 2.3712 0.0006 8 6 6.3513 1.1493 0.0011 9 6 5.5991 -0.0269 0.0016 10 6 6.2886 -1.3379 0.0016 11 8 7.5019 -1.3857 0.0016 12 8 5.5699 -2.4768 0.0015 13 6 6.3122 -3.7246 0.0021 14 1 7.2626 -3.5819 0.5162 15 6 6.5734 -4.1633 -1.4402 16 6 5.5111 -4.7853 0.7124 17 1 4.5413 -4.5453 1.1227 18 6 6.0167 -6.0617 0.8393 19 7 7.1978 -6.3538 0.3401 20 14 5.0241 -7.3762 1.7203 21 1 3.7389 -6.7965 2.1868 22 1 4.7516 -8.4991 0.7875 23 1 5.7928 -7.8779 2.8876 24 7 4.2758 0.0173 0.0006 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 0.0004 29 1 3.7725 3.3163 -0.0105 30 1 6.2556 3.2958 0.0003 31 1 7.4306 1.1075 0.0015 32 1 7.1528 -3.3962 -1.9540 33 1 7.1303 -5.1003 -1.4398 34 1 5.6230 -4.3062 -1.9544 35 1 7.5534 -7.2519 0.4291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343355999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:33 Heat of formation + Delta-G solvation = -84.656079 kcal Electronic energy + Delta-G solvation = -20952.429574 eV Core-core repulsion = 17529.881264 eV Total energy + Delta-G solvation = -3422.548310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89384 -39.58172 -38.68063 -35.84116 -34.78745 -33.36354 -32.80954 -31.83235 -29.57896 -27.34323 -25.41999 -25.11533 -24.21025 -21.97837 -20.77395 -20.01272 -18.42728 -17.69615 -16.68714 -16.27513 -16.11893 -15.65354 -15.54893 -15.36107 -15.11995 -14.56235 -14.24234 -13.80165 -13.51517 -13.07474 -12.86439 -12.36840 -12.35336 -12.23353 -11.93139 -11.28011 -11.11861 -10.88166 -10.75632 -10.39940 -10.31750 -10.22508 -10.04516 -9.65981 -9.61908 -9.46303 -9.18828 -8.94368 -8.52961 -6.21564 -4.28164 0.31593 0.76450 2.37425 2.99046 3.04558 3.19902 3.22332 3.30094 3.36789 3.84350 3.94852 4.30102 4.55071 4.70821 4.75615 4.97148 5.11765 5.12473 5.28845 5.37229 5.45187 5.64026 5.76924 5.85324 6.22913 6.26599 6.56992 6.84367 6.84768 7.04065 7.21747 7.48875 7.56286 7.66571 7.85412 8.02923 8.08488 8.50825 8.82655 9.37142 10.86067 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.004857 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.884801 B = 5763.594478 C = 7091.598561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.713 5.713 3 C 0.576 3.424 4 O -0.539 6.539 5 C 0.070 3.930 6 C -0.092 4.092 7 C -0.089 4.089 8 C -0.090 4.090 9 C 0.107 3.893 10 C 0.509 3.491 11 O -0.507 6.507 12 O -0.329 6.329 13 C 0.212 3.788 14 H 0.048 0.952 15 C -0.155 4.155 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.912 3.088 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.406 5.406 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.420 0.580 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.016 0.984 33 H 0.100 0.900 34 H 0.038 0.962 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.895 14.436 -1.351 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.364 5.364 3 C 0.361 3.639 4 O -0.416 6.416 5 C -0.071 4.071 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.110 4.110 9 C -0.032 4.032 10 C 0.351 3.649 11 O -0.396 6.396 12 O -0.243 6.243 13 C 0.160 3.840 14 H 0.066 0.934 15 C -0.213 4.213 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.120 5.120 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.257 0.743 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.035 0.965 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.362 14.116 -1.370 15.980 hybrid contribution 0.437 -0.481 0.382 0.754 sum -6.925 13.635 -0.988 15.325 Atomic orbital electron populations 1.21617 0.79046 1.02806 1.02262 1.45702 1.07947 1.09435 1.73336 1.17812 0.85542 0.84118 0.76479 1.90769 1.68794 1.31326 1.50675 1.21169 0.94406 0.89391 1.02182 1.22335 0.94757 0.99423 0.94783 1.21630 0.93926 0.98482 0.97404 1.22393 1.02822 0.91462 0.94313 1.20487 0.88968 0.92629 1.01129 1.20554 0.85309 0.85216 0.73792 1.90800 1.14413 1.87942 1.46489 1.86645 1.42025 1.15264 1.80388 1.20775 0.92855 0.75434 0.94946 0.93406 1.22169 1.00192 1.02500 0.96396 1.21044 1.04766 0.93497 1.36349 0.91100 1.24881 0.95244 0.98254 0.95579 1.69900 1.16941 1.21031 1.44843 0.86213 0.79959 0.80785 0.79142 1.19454 1.20708 1.20768 1.67554 1.09382 1.28519 1.06576 0.92044 0.90103 0.92025 0.74341 0.82890 0.83003 0.82532 0.96503 0.88113 0.94276 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.70 59.85 0.64 1.46 16 2 N -0.71 -8.78 5.70 -67.91 -0.39 -9.16 16 3 C 0.58 8.07 7.81 -12.16 -0.09 7.98 16 4 O -0.54 -8.40 16.32 5.35 0.09 -8.32 16 5 C 0.07 0.97 6.75 -83.02 -0.56 0.41 16 6 C -0.09 -1.02 9.63 -38.94 -0.38 -1.40 16 7 C -0.09 -0.86 10.16 -39.34 -0.40 -1.26 16 8 C -0.09 -1.13 9.63 -38.94 -0.38 -1.51 16 9 C 0.11 1.78 6.75 -83.04 -0.56 1.22 16 10 C 0.51 10.69 7.93 34.79 0.28 10.96 16 11 O -0.51 -11.45 15.58 -19.21 -0.30 -11.75 16 12 O -0.33 -7.80 9.68 -40.41 -0.39 -8.19 16 13 C 0.21 5.60 2.56 -27.88 -0.07 5.53 16 14 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 15 C -0.15 -3.86 9.33 37.16 0.35 -3.51 16 16 C -0.52 -14.30 8.90 -34.44 -0.31 -14.60 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 20 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.41 -6.51 9.29 -6.39 -0.06 -6.57 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.42 5.25 8.16 -40.82 -0.33 4.91 16 29 H 0.15 1.42 7.64 -52.49 -0.40 1.02 16 30 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.16 1.79 7.64 -52.48 -0.40 1.39 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -31.94 315.75 -6.16 -38.11 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.90 Total: 2.72 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.58 Total: 6.88 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.18 Total: -39.94 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.60 Total: -28.26 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.94 -6.16 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343355999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.549 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds