Wall clock time and date at job start Tue Mar 31 2020 01:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 120.00001 * 2 1 4 4 O 1.21516 * 119.99820 * 0.02562 * 3 2 1 5 5 C 1.48226 * 120.00252 * 179.97438 * 3 2 1 6 6 C 1.39651 * 119.65252 * 179.72832 * 5 3 2 7 7 C 1.38539 * 119.24780 * 179.75295 * 6 5 3 8 8 C 1.38585 * 118.55702 * 0.51130 * 7 6 5 9 9 C 1.39618 * 119.24445 * 359.72774 * 8 7 6 10 10 C 1.48126 * 119.66071 * 179.97438 * 9 8 7 11 11 O 1.21427 * 119.99681 * 0.02562 * 10 9 8 12 12 O 1.34670 * 120.00517 * 180.02562 * 10 9 8 13 13 C 1.45196 * 116.99840 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.47632 * 30.00138 * 13 12 10 15 15 C 1.52997 * 109.47250 * 269.99532 * 13 12 10 16 16 C 1.50709 * 109.46767 * 150.00243 * 13 12 10 17 17 H 1.07999 * 119.99630 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99736 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00420 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99696 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47258 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47255 * 119.99784 * 20 18 16 23 23 H 1.48501 * 109.47470 * 239.99790 * 20 18 16 24 24 N 1.32321 * 119.64825 * 0.02562 * 5 3 2 25 25 H 1.09001 * 109.47060 * 60.00485 * 1 2 3 26 26 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47212 * 300.00056 * 1 2 3 28 28 H 0.96997 * 119.99787 * 179.97438 * 2 1 3 29 29 H 1.07994 * 120.37342 * 359.97438 * 6 5 3 30 30 H 1.08008 * 120.72035 * 180.24622 * 7 6 5 31 31 H 1.08004 * 120.37630 * 179.74876 * 8 7 6 32 32 H 1.09002 * 109.47296 * 60.00186 * 15 13 12 33 33 H 1.08997 * 109.47431 * 180.02562 * 15 13 12 34 34 H 1.09004 * 109.47388 * 300.00430 * 15 13 12 35 35 H 0.97000 * 120.00516 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5313 2.2195 0.0005 5 6 3.6212 1.1672 0.0006 6 6 4.3120 2.3809 -0.0052 7 6 5.6974 2.3712 0.0006 8 6 6.3513 1.1493 0.0011 9 6 5.5991 -0.0269 0.0016 10 6 6.2886 -1.3379 0.0016 11 8 7.5019 -1.3857 0.0016 12 8 5.5699 -2.4768 0.0015 13 6 6.3122 -3.7246 0.0021 14 1 7.2626 -3.5819 0.5162 15 6 6.5734 -4.1633 -1.4402 16 6 5.5111 -4.7853 0.7124 17 1 4.5413 -4.5453 1.1227 18 6 6.0167 -6.0617 0.8393 19 7 7.1978 -6.3538 0.3401 20 14 5.0241 -7.3762 1.7203 21 1 3.7389 -6.7965 2.1868 22 1 4.7516 -8.4991 0.7875 23 1 5.7928 -7.8779 2.8876 24 7 4.2758 0.0173 0.0006 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 0.0004 29 1 3.7725 3.3163 -0.0105 30 1 6.2556 3.2958 0.0003 31 1 7.4306 1.1075 0.0015 32 1 7.1528 -3.3962 -1.9540 33 1 7.1303 -5.1003 -1.4398 34 1 5.6230 -4.3062 -1.9544 35 1 7.5534 -7.2519 0.4291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343355999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:32 Heat of formation + Delta-G solvation = -106.775129 kcal Electronic energy + Delta-G solvation = -20953.388728 eV Core-core repulsion = 17529.881264 eV Total energy + Delta-G solvation = -3423.507464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05884 -41.05897 -39.90055 -37.65741 -35.77987 -35.34844 -33.85373 -32.98354 -31.57592 -28.23311 -27.47019 -26.49171 -25.19419 -23.55693 -22.01953 -21.54136 -19.66008 -19.10724 -18.60198 -17.62820 -17.19721 -17.05285 -17.00375 -16.50116 -16.44848 -16.32803 -15.29960 -14.96417 -14.89721 -14.33593 -14.22122 -13.94720 -13.74928 -13.29135 -13.19590 -13.09382 -12.98905 -12.81593 -12.39854 -12.17278 -12.08304 -11.61489 -11.46628 -11.17237 -11.00375 -10.78184 -10.61510 -10.54172 -10.16233 -8.28575 -6.44737 -0.75214 -0.26593 1.19995 1.42565 1.43334 1.56212 1.71808 1.73759 2.05738 2.38613 2.70114 2.82459 3.02547 3.56663 3.71120 3.80554 3.86524 4.22106 4.33943 4.45162 4.51064 4.61874 4.77482 4.79371 4.87614 4.89056 4.91778 5.11440 5.29473 5.33010 5.47293 5.60189 5.83367 6.01812 6.16619 6.44772 6.59863 6.86773 7.00262 7.26177 8.79510 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.004857 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.884801 B = 5763.594478 C = 7091.598561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.713 5.713 3 C 0.572 3.428 4 O -0.559 6.559 5 C 0.054 3.946 6 C -0.077 4.077 7 C -0.062 4.062 8 C -0.080 4.080 9 C 0.076 3.924 10 C 0.505 3.495 11 O -0.532 6.532 12 O -0.340 6.340 13 C 0.214 3.786 14 H 0.012 0.988 15 C -0.142 4.142 16 C -0.545 4.545 17 H 0.067 0.933 18 C 0.018 3.982 19 N -0.916 5.916 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.276 1.276 24 N -0.428 5.428 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.418 0.582 29 H 0.178 0.822 30 H 0.206 0.794 31 H 0.168 0.832 32 H 0.024 0.976 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 15.957 -1.120 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.362 5.362 3 C 0.357 3.643 4 O -0.438 6.438 5 C -0.088 4.088 6 C -0.097 4.097 7 C -0.087 4.087 8 C -0.100 4.100 9 C -0.062 4.062 10 C 0.349 3.651 11 O -0.423 6.423 12 O -0.255 6.255 13 C 0.161 3.839 14 H 0.030 0.970 15 C -0.200 4.200 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.182 4.182 19 N -0.554 5.554 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.202 1.202 24 N -0.143 5.143 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.254 0.746 29 H 0.196 0.804 30 H 0.222 0.778 31 H 0.186 0.814 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.261 15.640 -1.147 17.725 hybrid contribution 0.707 -0.821 0.302 1.125 sum -7.554 14.819 -0.845 16.655 Atomic orbital electron populations 1.21817 0.77426 1.04483 1.02390 1.45850 1.09156 1.08941 1.72301 1.17932 0.85762 0.84251 0.76377 1.90750 1.69126 1.31824 1.52060 1.21349 0.94422 0.89875 1.03135 1.22724 0.95528 0.99172 0.92270 1.22156 0.93326 0.98965 0.94256 1.22610 1.03305 0.91095 0.93035 1.20075 0.89622 0.91218 1.05328 1.21368 0.85392 0.85885 0.72473 1.90764 1.15459 1.88367 1.47708 1.86629 1.42095 1.15518 1.81214 1.20484 0.91499 0.76766 0.95119 0.96972 1.21988 1.00286 1.01779 0.95900 1.21284 1.04937 0.94526 1.37487 0.91484 1.25791 0.96220 1.00217 0.95930 1.70009 1.18252 1.21817 1.45330 0.85143 0.78518 0.77762 0.78026 1.18786 1.19649 1.20174 1.67322 1.09361 1.30179 1.07434 0.91815 0.87757 0.91903 0.74618 0.80433 0.77753 0.81425 0.95657 0.89838 0.93625 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 10.70 127.77 1.37 2.82 16 2 N -0.71 -17.18 5.70 -487.07 -2.78 -19.96 16 3 C 0.57 15.50 7.81 86.90 0.68 16.18 16 4 O -0.56 -16.67 16.32 -3.77 -0.06 -16.73 16 5 C 0.05 1.43 6.75 42.07 0.28 1.71 16 6 C -0.08 -1.44 9.63 22.68 0.22 -1.22 16 7 C -0.06 -0.93 10.16 22.42 0.23 -0.70 16 8 C -0.08 -1.86 9.63 22.69 0.22 -1.64 16 9 C 0.08 2.51 6.75 42.02 0.28 2.79 16 10 C 0.50 21.89 7.93 70.45 0.56 22.45 16 11 O -0.53 -24.92 15.58 20.07 0.31 -24.61 16 12 O -0.34 -16.78 9.68 -55.79 -0.54 -17.32 16 13 C 0.21 11.79 2.56 29.85 0.08 11.86 16 14 H 0.01 0.76 7.16 -2.39 -0.02 0.74 16 15 C -0.14 -7.29 9.33 71.98 0.67 -6.62 16 16 C -0.54 -30.81 8.90 25.60 0.23 -30.59 16 17 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 18 C 0.02 0.99 5.30 84.66 0.45 1.44 16 19 N -0.92 -52.01 11.32 21.45 0.24 -51.77 16 20 Si 0.98 42.51 29.54 68.60 2.03 44.54 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 N -0.43 -13.69 9.29 -174.13 -1.62 -15.30 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.42 10.48 8.16 -92.71 -0.76 9.72 16 29 H 0.18 2.53 7.64 -2.91 -0.02 2.51 16 30 H 0.21 1.00 8.06 -2.91 -0.02 0.97 16 31 H 0.17 3.48 7.64 -2.91 -0.02 3.46 16 32 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 4.58 6.07 -2.39 -0.01 4.56 16 34 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -71.63 315.75 3.22 -68.40 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.37 Total: 14.26 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.26 Total: 18.49 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -4.15 Total: -87.03 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.29 Total: -58.66 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -71.63 3.22 -68.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343355999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.371 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds