Wall clock time and date at job start Tue Mar 31 2020 01:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99852 * 2 1 4 4 O 1.21496 * 120.00083 * 0.02562 * 3 2 1 5 5 C 1.48229 * 119.99685 * 179.97438 * 3 2 1 6 6 C 1.39650 * 119.65266 * 180.02562 * 5 3 2 7 7 C 1.38539 * 119.25425 * 179.97438 * 6 5 3 8 8 C 1.38586 * 118.55216 * 0.27644 * 7 6 5 9 9 C 1.39617 * 119.24719 * 359.43172 * 8 7 6 10 10 C 1.48121 * 119.66189 * 180.30184 * 9 8 7 11 11 O 1.21426 * 119.99620 * 0.27772 * 10 9 8 12 12 O 1.34675 * 120.00423 * 180.27881 * 10 9 8 13 13 C 1.45198 * 117.00189 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47026 * 330.00181 * 13 12 10 15 15 C 1.53005 * 109.47221 * 89.99816 * 13 12 10 16 16 C 1.50694 * 109.47507 * 209.99856 * 13 12 10 17 17 H 1.08003 * 119.99747 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00414 * 180.02562 * 16 13 12 19 19 N 1.31510 * 119.99986 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00104 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46947 * 60.00053 * 20 18 16 22 22 H 1.48494 * 109.46966 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47074 * 299.99836 * 20 18 16 24 24 N 1.32326 * 119.65321 * 359.97438 * 5 3 2 25 25 H 1.09007 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47256 * 299.99984 * 1 2 3 27 27 H 1.08998 * 109.46880 * 60.00176 * 1 2 3 28 28 H 0.97001 * 119.99649 * 179.97438 * 2 1 3 29 29 H 1.08008 * 120.37043 * 0.02562 * 6 5 3 30 30 H 1.08002 * 120.71923 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.37104 * 179.70311 * 8 7 6 32 32 H 1.08994 * 109.47164 * 180.02562 * 15 13 12 33 33 H 1.09007 * 109.47141 * 300.00092 * 15 13 12 34 34 H 1.08998 * 109.46846 * 59.99783 * 15 13 12 35 35 H 0.96998 * 120.00493 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2194 0.0005 5 6 3.6211 1.1672 0.0006 6 6 4.3121 2.3808 0.0011 7 6 5.6974 2.3711 0.0022 8 6 6.3513 1.1492 -0.0032 9 6 5.5991 -0.0270 0.0026 10 6 6.2886 -1.3380 0.0037 11 8 7.5019 -1.3858 0.0047 12 8 5.5698 -2.4769 0.0036 13 6 6.3120 -3.7248 0.0042 14 1 7.2629 -3.5823 -0.5093 15 6 6.5721 -4.1629 1.4469 16 6 5.5116 -4.7857 -0.7063 17 1 4.5418 -4.5461 -1.1168 18 6 6.0168 -6.0625 -0.8313 19 7 7.1975 -6.3544 -0.3310 20 14 5.0249 -7.3773 -1.7127 21 1 4.7736 -6.9522 -3.1132 22 1 5.7839 -8.6536 -1.7120 23 1 3.7289 -7.5712 -1.0141 24 7 4.2758 0.0172 0.0016 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.7724 3.3164 0.0015 30 1 6.2556 3.2957 0.0022 31 1 7.4305 1.1074 -0.0073 32 1 7.1297 -5.0995 1.4473 33 1 7.1511 -3.3956 1.9609 34 1 5.6213 -4.3054 1.9604 35 1 7.5531 -7.2525 -0.4193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343356000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:35 Heat of formation + Delta-G solvation = -84.563732 kcal Electronic energy + Delta-G solvation = -20952.076057 eV Core-core repulsion = 17529.531751 eV Total energy + Delta-G solvation = -3422.544306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89411 -39.58274 -38.68151 -35.84017 -34.78916 -33.36187 -32.80904 -31.83225 -29.57640 -27.34311 -25.41720 -25.11384 -24.21007 -21.97711 -20.77370 -20.01137 -18.42766 -17.69569 -16.68329 -16.27468 -16.11900 -15.65369 -15.54283 -15.36275 -15.11826 -14.56692 -14.24501 -13.80142 -13.51547 -13.07352 -12.86547 -12.36872 -12.35101 -12.23224 -11.92375 -11.28238 -11.09350 -10.88388 -10.75608 -10.43426 -10.31306 -10.22483 -10.04402 -9.65917 -9.61352 -9.46264 -9.18837 -8.96008 -8.51943 -6.20988 -4.27870 0.31623 0.76458 2.37461 2.99037 3.04602 3.19942 3.25169 3.29131 3.34785 3.84379 3.94832 4.30251 4.55079 4.70845 4.75640 4.97173 5.11845 5.12639 5.28851 5.37188 5.45205 5.63983 5.76952 5.85357 6.22921 6.26605 6.57161 6.84569 6.84869 7.04268 7.21742 7.48854 7.56163 7.66820 7.85467 8.02915 8.08788 8.50949 8.82248 9.37312 10.86516 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.004857 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.961002 B = 5763.579566 C = 7091.308556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.713 5.713 3 C 0.576 3.424 4 O -0.539 6.539 5 C 0.070 3.930 6 C -0.092 4.092 7 C -0.089 4.089 8 C -0.090 4.090 9 C 0.107 3.893 10 C 0.509 3.491 11 O -0.507 6.507 12 O -0.329 6.329 13 C 0.213 3.787 14 H 0.048 0.952 15 C -0.155 4.155 16 C -0.520 4.520 17 H 0.070 0.930 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.913 3.087 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 N -0.406 5.406 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.420 0.580 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.016 0.984 34 H 0.038 0.962 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 14.413 1.325 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.364 5.364 3 C 0.361 3.639 4 O -0.415 6.415 5 C -0.072 4.072 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.110 4.110 9 C -0.032 4.032 10 C 0.351 3.649 11 O -0.396 6.396 12 O -0.243 6.243 13 C 0.161 3.839 14 H 0.066 0.934 15 C -0.213 4.213 16 C -0.558 4.558 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.740 3.260 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 N -0.120 5.120 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.257 0.743 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.119 0.881 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.336 14.088 1.346 15.940 hybrid contribution 0.414 -0.469 -0.391 0.737 sum -6.922 13.619 0.955 15.307 Atomic orbital electron populations 1.21616 0.79050 1.02805 1.02261 1.45703 1.07945 1.09436 1.73346 1.17806 0.85539 0.84115 0.76479 1.90764 1.68791 1.31331 1.50664 1.21172 0.94409 0.89391 1.02184 1.22337 0.94758 0.99424 0.94784 1.21629 0.93926 0.98481 0.97404 1.22392 1.02823 0.91463 0.94311 1.20486 0.88968 0.92630 1.01128 1.20552 0.85308 0.85214 0.73793 1.90800 1.14413 1.87941 1.46486 1.86645 1.42030 1.15268 1.80390 1.20762 0.92835 0.75407 0.94925 0.93417 1.22172 1.00186 1.02502 0.96402 1.20962 1.04796 0.93511 1.36548 0.91209 1.24875 0.95245 0.98222 0.95552 1.69881 1.16928 1.21201 1.44710 0.86316 0.79758 0.79956 0.80003 1.19993 1.21039 1.19915 1.67554 1.09383 1.28520 1.06576 0.90103 0.92046 0.92026 0.74341 0.82889 0.83003 0.82533 0.88110 0.96512 0.94275 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.70 59.85 0.64 1.46 16 2 N -0.71 -8.77 5.70 -67.92 -0.39 -9.16 16 3 C 0.58 8.07 7.81 -12.15 -0.09 7.98 16 4 O -0.54 -8.40 16.32 5.37 0.09 -8.31 16 5 C 0.07 0.97 6.75 -83.02 -0.56 0.41 16 6 C -0.09 -1.02 9.63 -38.94 -0.38 -1.40 16 7 C -0.09 -0.86 10.16 -39.34 -0.40 -1.26 16 8 C -0.09 -1.14 9.63 -38.94 -0.38 -1.51 16 9 C 0.11 1.78 6.75 -83.05 -0.56 1.22 16 10 C 0.51 10.69 7.93 34.79 0.28 10.97 16 11 O -0.51 -11.46 15.58 -19.21 -0.30 -11.75 16 12 O -0.33 -7.80 9.68 -40.42 -0.39 -8.20 16 13 C 0.21 5.63 2.56 -27.88 -0.07 5.55 16 14 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 15 C -0.15 -3.86 9.33 37.16 0.35 -3.52 16 16 C -0.52 -14.35 8.90 -34.44 -0.31 -14.65 16 17 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 20 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 N -0.41 -6.52 9.29 -6.39 -0.06 -6.58 16 25 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.42 5.24 8.16 -40.82 -0.33 4.91 16 29 H 0.15 1.42 7.64 -52.48 -0.40 1.02 16 30 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.16 1.79 7.64 -52.49 -0.40 1.39 16 32 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 33 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -31.90 315.75 -6.16 -38.07 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.90 Total: 2.77 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.58 Total: 6.87 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.18 Total: -39.94 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.60 Total: -28.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.90 -6.16 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343356000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.499 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds