Wall clock time and date at job start Tue Mar 31 2020 01:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99852 * 2 1 4 4 O 1.21496 * 120.00083 * 0.02562 * 3 2 1 5 5 C 1.48229 * 119.99685 * 179.97438 * 3 2 1 6 6 C 1.39650 * 119.65266 * 180.02562 * 5 3 2 7 7 C 1.38539 * 119.25425 * 179.97438 * 6 5 3 8 8 C 1.38586 * 118.55216 * 0.27644 * 7 6 5 9 9 C 1.39617 * 119.24719 * 359.43172 * 8 7 6 10 10 C 1.48121 * 119.66189 * 180.30184 * 9 8 7 11 11 O 1.21426 * 119.99620 * 0.27772 * 10 9 8 12 12 O 1.34675 * 120.00423 * 180.27881 * 10 9 8 13 13 C 1.45198 * 117.00189 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47026 * 330.00181 * 13 12 10 15 15 C 1.53005 * 109.47221 * 89.99816 * 13 12 10 16 16 C 1.50694 * 109.47507 * 209.99856 * 13 12 10 17 17 H 1.08003 * 119.99747 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00414 * 180.02562 * 16 13 12 19 19 N 1.31510 * 119.99986 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 120.00104 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46947 * 60.00053 * 20 18 16 22 22 H 1.48494 * 109.46966 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47074 * 299.99836 * 20 18 16 24 24 N 1.32326 * 119.65321 * 359.97438 * 5 3 2 25 25 H 1.09007 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47256 * 299.99984 * 1 2 3 27 27 H 1.08998 * 109.46880 * 60.00176 * 1 2 3 28 28 H 0.97001 * 119.99649 * 179.97438 * 2 1 3 29 29 H 1.08008 * 120.37043 * 0.02562 * 6 5 3 30 30 H 1.08002 * 120.71923 * 179.97438 * 7 6 5 31 31 H 1.08001 * 120.37104 * 179.70311 * 8 7 6 32 32 H 1.08994 * 109.47164 * 180.02562 * 15 13 12 33 33 H 1.09007 * 109.47141 * 300.00092 * 15 13 12 34 34 H 1.08998 * 109.46846 * 59.99783 * 15 13 12 35 35 H 0.96998 * 120.00493 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2194 0.0005 5 6 3.6211 1.1672 0.0006 6 6 4.3121 2.3808 0.0011 7 6 5.6974 2.3711 0.0022 8 6 6.3513 1.1492 -0.0032 9 6 5.5991 -0.0270 0.0026 10 6 6.2886 -1.3380 0.0037 11 8 7.5019 -1.3858 0.0047 12 8 5.5698 -2.4769 0.0036 13 6 6.3120 -3.7248 0.0042 14 1 7.2629 -3.5823 -0.5093 15 6 6.5721 -4.1629 1.4469 16 6 5.5116 -4.7857 -0.7063 17 1 4.5418 -4.5461 -1.1168 18 6 6.0168 -6.0625 -0.8313 19 7 7.1975 -6.3544 -0.3310 20 14 5.0249 -7.3773 -1.7127 21 1 4.7736 -6.9522 -3.1132 22 1 5.7839 -8.6536 -1.7120 23 1 3.7289 -7.5712 -1.0141 24 7 4.2758 0.0172 0.0016 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8401 0.0004 29 1 3.7724 3.3164 0.0015 30 1 6.2556 3.2957 0.0022 31 1 7.4305 1.1074 -0.0073 32 1 7.1297 -5.0995 1.4473 33 1 7.1511 -3.3956 1.9609 34 1 5.6213 -4.3054 1.9604 35 1 7.5531 -7.2525 -0.4193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343356000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:34 Heat of formation + Delta-G solvation = -106.645119 kcal Electronic energy + Delta-G solvation = -20953.033578 eV Core-core repulsion = 17529.531751 eV Total energy + Delta-G solvation = -3423.501827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05909 -41.05953 -39.90239 -37.65708 -35.78091 -35.34658 -33.85369 -32.98362 -31.57396 -28.23249 -27.46626 -26.49141 -25.19404 -23.55569 -22.01886 -21.54110 -19.65993 -19.10714 -18.59701 -17.62439 -17.19624 -17.05655 -16.99727 -16.50418 -16.44961 -16.33100 -15.30031 -14.96301 -14.89584 -14.33557 -14.22232 -13.93952 -13.74744 -13.29395 -13.18929 -13.09333 -12.97794 -12.81429 -12.39133 -12.19579 -12.08411 -11.61122 -11.46549 -11.17238 -11.02071 -10.78224 -10.60515 -10.54038 -10.16187 -8.27998 -6.44474 -0.75221 -0.26610 1.19995 1.42540 1.46527 1.53865 1.71766 1.73465 2.05755 2.38852 2.70106 2.82471 3.02939 3.56676 3.71119 3.80562 3.86510 4.22097 4.33909 4.45191 4.51116 4.61910 4.77487 4.79408 4.87613 4.89054 4.91810 5.11551 5.29516 5.33010 5.47030 5.60243 5.83390 6.02026 6.16654 6.44804 6.59633 6.86687 7.00306 7.26323 8.79607 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.004857 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.961002 B = 5763.579566 C = 7091.308556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.713 5.713 3 C 0.572 3.428 4 O -0.559 6.559 5 C 0.054 3.946 6 C -0.077 4.077 7 C -0.062 4.062 8 C -0.080 4.080 9 C 0.076 3.924 10 C 0.505 3.495 11 O -0.532 6.532 12 O -0.340 6.340 13 C 0.215 3.785 14 H 0.012 0.988 15 C -0.142 4.142 16 C -0.547 4.547 17 H 0.067 0.933 18 C 0.019 3.981 19 N -0.916 5.916 20 Si 0.982 3.018 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.264 1.264 24 N -0.428 5.428 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.418 0.582 29 H 0.178 0.822 30 H 0.205 0.795 31 H 0.168 0.832 32 H 0.083 0.917 33 H 0.024 0.976 34 H 0.044 0.956 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 15.941 1.086 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.363 5.363 3 C 0.357 3.643 4 O -0.437 6.437 5 C -0.088 4.088 6 C -0.097 4.097 7 C -0.087 4.087 8 C -0.101 4.101 9 C -0.062 4.062 10 C 0.349 3.651 11 O -0.423 6.423 12 O -0.255 6.255 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.200 4.200 16 C -0.585 4.585 17 H 0.085 0.915 18 C -0.181 4.181 19 N -0.554 5.554 20 Si 0.805 3.195 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.188 1.188 24 N -0.143 5.143 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.254 0.746 29 H 0.196 0.804 30 H 0.222 0.778 31 H 0.186 0.814 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.263 15.619 1.115 17.706 hybrid contribution 0.691 -0.808 -0.309 1.107 sum -7.572 14.811 0.806 16.654 Atomic orbital electron populations 1.21817 0.77429 1.04484 1.02387 1.45851 1.09153 1.08941 1.72308 1.17926 0.85757 0.84250 0.76379 1.90745 1.69122 1.31830 1.52048 1.21352 0.94428 0.89873 1.03132 1.22727 0.95528 0.99177 0.92270 1.22155 0.93327 0.98962 0.94257 1.22609 1.03306 0.91099 0.93038 1.20073 0.89624 0.91216 1.05329 1.21367 0.85392 0.85886 0.72473 1.90764 1.15461 1.88367 1.47706 1.86629 1.42097 1.15519 1.81216 1.20473 0.91481 0.76748 0.95098 0.96996 1.21990 1.00271 1.01786 0.95906 1.21225 1.05030 0.94534 1.37672 0.91458 1.25789 0.96219 1.00197 0.95901 1.69997 1.18250 1.21901 1.45219 0.85247 0.78491 0.76956 0.78798 1.19468 1.20212 1.18814 1.67322 1.09358 1.30179 1.07433 0.87752 0.91826 0.91900 0.74615 0.80430 0.77755 0.81430 0.89827 0.95670 0.93640 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 10.70 127.77 1.37 2.82 16 2 N -0.71 -17.16 5.70 -487.09 -2.78 -19.93 16 3 C 0.57 15.49 7.81 86.90 0.68 16.17 16 4 O -0.56 -16.66 16.32 -3.70 -0.06 -16.72 16 5 C 0.05 1.43 6.75 42.07 0.28 1.71 16 6 C -0.08 -1.44 9.63 22.68 0.22 -1.22 16 7 C -0.06 -0.93 10.16 22.42 0.23 -0.70 16 8 C -0.08 -1.86 9.63 22.69 0.22 -1.64 16 9 C 0.08 2.51 6.75 42.02 0.28 2.79 16 10 C 0.50 21.90 7.93 70.45 0.56 22.45 16 11 O -0.53 -24.93 15.58 20.08 0.31 -24.62 16 12 O -0.34 -16.78 9.68 -55.84 -0.54 -17.32 16 13 C 0.22 11.83 2.56 29.85 0.08 11.91 16 14 H 0.01 0.74 7.16 -2.39 -0.02 0.73 16 15 C -0.14 -7.30 9.33 71.98 0.67 -6.62 16 16 C -0.55 -30.94 8.90 25.60 0.23 -30.72 16 17 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 18 C 0.02 1.03 5.30 84.65 0.45 1.48 16 19 N -0.92 -52.03 11.32 21.45 0.24 -51.79 16 20 Si 0.98 42.47 29.54 68.60 2.03 44.49 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 N -0.43 -13.68 9.29 -174.13 -1.62 -15.30 16 25 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.42 10.46 8.16 -92.71 -0.76 9.70 16 29 H 0.18 2.53 7.64 -2.91 -0.02 2.51 16 30 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 31 H 0.17 3.49 7.64 -2.91 -0.02 3.47 16 32 H 0.08 4.58 6.07 -2.39 -0.01 4.57 16 33 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -71.55 315.75 3.22 -68.33 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.37 Total: 14.43 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 5.26 Total: 18.43 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.15 Total: -87.02 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.29 Total: -58.66 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -71.55 3.22 -68.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343356000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.313 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds