Wall clock time and date at job start Tue Mar 31 2020 01:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47747 * 2 1 4 4 C 1.50703 * 109.47007 * 239.99508 * 2 1 3 5 5 O 1.20821 * 120.00259 * 240.00498 * 4 2 1 6 6 O 1.34231 * 119.99789 * 60.00166 * 4 2 1 7 7 C 1.45203 * 116.99764 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.46800 * 179.97438 * 7 6 4 9 9 C 1.50706 * 112.99641 * 53.52875 * 8 7 6 10 10 H 1.08002 * 119.99579 * 245.39227 * 9 8 7 11 11 C 1.37879 * 120.00292 * 65.39282 * 9 8 7 12 12 N 1.31514 * 119.99681 * 6.60279 * 11 9 8 13 13 Si 1.86793 * 119.99933 * 186.61345 * 11 9 8 14 14 H 1.48500 * 109.47678 * 89.99440 * 13 11 9 15 15 H 1.48502 * 109.47170 * 209.99566 * 13 11 9 16 16 H 1.48500 * 109.47259 * 329.99670 * 13 11 9 17 17 C 1.54027 * 113.82007 * 281.53864 * 8 7 6 18 18 O 1.44182 * 85.51751 * 223.19833 * 17 8 7 19 19 C 1.44173 * 93.34120 * 24.19163 * 18 17 8 20 20 C 1.53004 * 109.47036 * 120.00218 * 2 1 3 21 21 C 1.53004 * 109.46703 * 294.99725 * 20 2 1 22 22 F 1.39899 * 109.47442 * 54.99228 * 20 2 1 23 23 F 1.39898 * 109.47193 * 174.99739 * 20 2 1 24 24 H 1.08999 * 109.47747 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46910 * 60.00046 * 1 2 3 26 26 H 1.08999 * 109.47180 * 300.00566 * 1 2 3 27 27 H 1.08994 * 109.47715 * 300.00287 * 7 6 4 28 28 H 1.08998 * 109.46795 * 60.00723 * 7 6 4 29 29 H 0.97006 * 119.99541 * 179.97438 * 12 11 9 30 30 H 1.09005 * 113.86620 * 337.34319 * 17 8 7 31 31 H 1.09001 * 113.86436 * 109.05115 * 17 8 7 32 32 H 1.09003 * 113.87000 * 221.66365 * 19 18 17 33 33 H 1.08998 * 113.98527 * 89.96939 * 19 18 17 34 34 H 1.08995 * 109.47140 * 59.99593 * 21 20 2 35 35 H 1.08996 * 109.47131 * 180.02562 * 21 20 2 36 36 H 1.09006 * 109.47017 * 299.99841 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 8 2.7268 -1.6929 -1.1196 6 8 1.7080 -0.2520 -2.4496 7 6 2.2276 -0.9860 -3.5896 8 6 1.7554 -0.3195 -4.8834 9 6 2.0811 1.1508 -4.9412 10 1 1.2849 1.8804 -4.9482 11 6 3.3957 1.5645 -4.9851 12 7 4.3600 0.6787 -5.1077 13 14 3.8068 3.3830 -4.8704 14 1 3.9956 3.7590 -3.4462 15 1 5.0566 3.6565 -5.6244 16 1 2.6950 4.1793 -5.4493 17 6 0.2990 -0.6520 -5.2588 18 8 0.7999 -0.8079 -6.6018 19 6 2.1419 -1.0928 -6.1583 20 6 2.0399 -0.7213 1.2493 21 6 1.6352 0.0689 2.4953 22 9 1.4820 -2.0029 1.3083 23 9 3.4342 -0.8218 1.1932 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 3.3170 -0.9850 -3.5566 28 1 1.8640 -2.0130 -3.5568 29 1 5.2848 0.9698 -5.1389 30 1 -0.0705 -1.5768 -4.8158 31 1 -0.3892 0.1848 -5.1392 32 1 2.9154 -0.6057 -6.7521 33 1 2.3374 -2.1518 -5.9896 34 1 0.5489 0.1473 2.5389 35 1 1.9988 -0.4446 3.3853 36 1 2.0699 1.0675 2.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346649221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:08 Heat of formation + Delta-G solvation = -204.932429 kcal Electronic energy + Delta-G solvation = -23067.427736 eV Core-core repulsion = 19188.974666 eV Total energy + Delta-G solvation = -3878.453070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -48.84440 -46.81486 -39.93447 -39.08440 -35.82851 -34.79773 -32.92378 -30.30069 -29.68774 -25.87134 -25.40956 -25.16290 -24.23540 -22.06177 -20.00271 -19.02876 -17.57201 -17.26765 -16.97941 -16.28043 -15.88960 -15.72760 -15.32673 -14.88302 -14.44699 -14.37134 -14.06907 -13.85651 -13.29904 -13.22979 -13.06708 -12.84872 -12.55783 -12.28357 -12.21284 -12.13017 -11.83492 -11.69528 -11.50638 -11.03147 -10.84975 -10.79125 -10.49704 -10.13084 -9.96752 -9.54524 -9.43208 -9.08836 -8.78776 -8.32674 -6.20092 -4.23038 2.69851 3.08431 3.23256 3.30733 3.33498 3.68357 3.96880 4.30878 4.33074 4.52285 4.86703 4.87742 5.00368 5.14937 5.17651 5.34300 5.47017 5.54278 5.61959 5.72088 5.89500 6.02720 6.06671 6.16522 6.28796 6.35656 6.52601 6.93432 7.09904 7.25956 7.30134 7.35017 7.76021 8.14296 8.37513 8.74002 9.40673 10.88432 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.006072 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.036680 B = 4610.185908 C = 5299.843850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 H 0.133 0.867 4 C 0.455 3.545 5 O -0.506 6.506 6 O -0.324 6.324 7 C 0.083 3.917 8 C 0.032 3.968 9 C -0.486 4.486 10 H 0.066 0.934 11 C 0.066 3.934 12 N -0.888 5.888 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.028 3.972 18 O -0.388 6.388 19 C 0.050 3.950 20 C 0.305 3.695 21 C -0.194 4.194 22 F -0.193 7.193 23 F -0.190 7.190 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 0.086 12.647 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 H 0.151 0.849 4 C 0.297 3.703 5 O -0.395 6.395 6 O -0.239 6.239 7 C 0.010 3.990 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.084 0.916 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.049 4.049 18 O -0.307 6.307 19 C -0.027 4.027 20 C 0.268 3.732 21 C -0.251 4.251 22 F -0.174 7.174 23 F -0.171 7.171 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.213 -0.239 12.337 13.815 hybrid contribution 0.750 0.622 0.214 0.997 sum -5.463 0.383 12.551 13.693 Atomic orbital electron populations 1.21812 0.89971 1.04026 1.04471 1.22129 1.00590 1.02486 0.89893 0.84886 1.22931 0.78278 0.83037 0.86089 1.90684 1.35314 1.25865 1.87648 1.86506 1.68322 1.55263 1.13796 1.23491 1.00789 0.91675 0.83085 1.21127 0.89676 0.97390 0.88629 1.20543 0.92213 0.88821 1.50800 0.91557 1.24966 0.96214 0.98127 0.94358 1.69888 1.00037 1.33718 1.48881 0.86475 0.77947 0.84805 0.78153 1.20550 1.21173 1.19672 1.24093 0.98877 0.98569 0.83328 1.89493 1.24289 1.91604 1.25327 1.23916 0.85179 0.96701 0.96864 1.20743 0.75464 0.80642 0.96306 1.22823 1.04679 1.01720 0.95920 1.93012 1.84919 1.42154 1.97361 1.93060 1.30212 1.96408 1.97412 0.91204 0.89310 0.90672 0.89645 0.94405 0.92502 0.92867 0.90371 0.88191 0.93471 0.88832 0.89699 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.71 37.15 0.32 -1.26 16 2 C -0.13 -1.84 2.52 -91.77 -0.23 -2.08 16 3 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 4 C 0.46 8.99 7.03 36.01 0.25 9.24 16 5 O -0.51 -11.52 14.57 -18.75 -0.27 -11.80 16 6 O -0.32 -7.01 9.73 -39.26 -0.38 -7.40 16 7 C 0.08 1.94 4.67 37.16 0.17 2.11 16 8 C 0.03 0.78 0.62 -154.58 -0.10 0.68 16 9 C -0.49 -12.68 7.92 -34.44 -0.27 -12.95 16 10 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 11 C 0.07 1.74 5.25 -17.82 -0.09 1.64 16 12 N -0.89 -24.04 11.31 55.43 0.63 -23.41 16 13 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.03 0.61 8.35 37.60 0.31 0.92 16 18 O -0.39 -9.21 12.40 -35.23 -0.44 -9.64 16 19 C 0.05 1.19 7.91 37.61 0.30 1.49 16 20 C 0.30 4.19 1.50 -26.73 -0.04 4.15 16 21 C -0.19 -1.64 9.14 37.16 0.34 -1.30 16 22 F -0.19 -3.02 15.75 2.25 0.04 -2.98 16 23 F -0.19 -3.24 15.82 2.25 0.04 -3.21 16 24 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 25 H 0.09 1.00 8.11 -51.92 -0.42 0.58 16 26 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 27 H 0.09 2.23 7.21 -51.93 -0.37 1.86 16 28 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 31 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 32 H 0.10 2.54 7.36 -51.93 -0.38 2.16 16 33 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.09 0.59 6.56 -51.93 -0.34 0.25 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -31.11 310.38 -4.52 -35.63 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.75 Total: -0.08 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 0.97 Total: 2.65 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.63 Total: -23.41 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.09 Total: -28.83 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.07 Total: -6.19 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.11 -4.52 -35.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346649221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.304 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds