Wall clock time and date at job start Tue Mar 31 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47747 * 2 1 4 4 C 1.50703 * 109.47007 * 239.99508 * 2 1 3 5 5 O 1.20821 * 120.00259 * 240.00498 * 4 2 1 6 6 O 1.34231 * 119.99789 * 60.00166 * 4 2 1 7 7 C 1.45203 * 116.99764 * 179.97438 * 6 4 2 8 8 C 1.53004 * 109.46800 * 179.97438 * 7 6 4 9 9 C 1.50706 * 112.99641 * 53.52875 * 8 7 6 10 10 H 1.08002 * 119.99579 * 245.39227 * 9 8 7 11 11 C 1.37879 * 120.00292 * 65.39282 * 9 8 7 12 12 N 1.31514 * 119.99681 * 6.60279 * 11 9 8 13 13 Si 1.86793 * 119.99933 * 186.61345 * 11 9 8 14 14 H 1.48500 * 109.47678 * 89.99440 * 13 11 9 15 15 H 1.48502 * 109.47170 * 209.99566 * 13 11 9 16 16 H 1.48500 * 109.47259 * 329.99670 * 13 11 9 17 17 C 1.54027 * 113.82007 * 281.53864 * 8 7 6 18 18 O 1.44182 * 85.51751 * 223.19833 * 17 8 7 19 19 C 1.44173 * 93.34120 * 24.19163 * 18 17 8 20 20 C 1.53004 * 109.47036 * 120.00218 * 2 1 3 21 21 C 1.53004 * 109.46703 * 294.99725 * 20 2 1 22 22 F 1.39899 * 109.47442 * 54.99228 * 20 2 1 23 23 F 1.39898 * 109.47193 * 174.99739 * 20 2 1 24 24 H 1.08999 * 109.47747 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46910 * 60.00046 * 1 2 3 26 26 H 1.08999 * 109.47180 * 300.00566 * 1 2 3 27 27 H 1.08994 * 109.47715 * 300.00287 * 7 6 4 28 28 H 1.08998 * 109.46795 * 60.00723 * 7 6 4 29 29 H 0.97006 * 119.99541 * 179.97438 * 12 11 9 30 30 H 1.09005 * 113.86620 * 337.34319 * 17 8 7 31 31 H 1.09001 * 113.86436 * 109.05115 * 17 8 7 32 32 H 1.09003 * 113.87000 * 221.66365 * 19 18 17 33 33 H 1.08998 * 113.98527 * 89.96939 * 19 18 17 34 34 H 1.08995 * 109.47140 * 59.99593 * 21 20 2 35 35 H 1.08996 * 109.47131 * 180.02562 * 21 20 2 36 36 H 1.09006 * 109.47017 * 299.99841 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 8 2.7268 -1.6929 -1.1196 6 8 1.7080 -0.2520 -2.4496 7 6 2.2276 -0.9860 -3.5896 8 6 1.7554 -0.3195 -4.8834 9 6 2.0811 1.1508 -4.9412 10 1 1.2849 1.8804 -4.9482 11 6 3.3957 1.5645 -4.9851 12 7 4.3600 0.6787 -5.1077 13 14 3.8068 3.3830 -4.8704 14 1 3.9956 3.7590 -3.4462 15 1 5.0566 3.6565 -5.6244 16 1 2.6950 4.1793 -5.4493 17 6 0.2990 -0.6520 -5.2588 18 8 0.7999 -0.8079 -6.6018 19 6 2.1419 -1.0928 -6.1583 20 6 2.0399 -0.7213 1.2493 21 6 1.6352 0.0689 2.4953 22 9 1.4820 -2.0029 1.3083 23 9 3.4342 -0.8218 1.1932 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 3.3170 -0.9850 -3.5566 28 1 1.8640 -2.0130 -3.5568 29 1 5.2848 0.9698 -5.1389 30 1 -0.0705 -1.5768 -4.8158 31 1 -0.3892 0.1848 -5.1392 32 1 2.9154 -0.6057 -6.7521 33 1 2.3374 -2.1518 -5.9896 34 1 0.5489 0.1473 2.5389 35 1 1.9988 -0.4446 3.3853 36 1 2.0699 1.0675 2.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346649221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:07 Heat of formation + Delta-G solvation = -224.340776 kcal Electronic energy + Delta-G solvation = -23068.269345 eV Core-core repulsion = 19188.974666 eV Total energy + Delta-G solvation = -3879.294680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.97837 -47.98243 -41.61226 -40.84994 -37.49243 -35.91189 -34.88337 -31.93457 -30.76130 -27.47539 -27.16769 -26.65716 -25.88338 -23.34577 -21.35291 -20.88284 -18.86937 -18.59100 -18.47929 -17.89801 -17.43113 -17.16395 -16.87508 -16.64427 -16.21145 -16.14385 -15.70623 -15.09099 -14.60573 -14.37692 -14.25699 -14.02962 -13.87430 -13.65205 -13.56005 -13.37089 -13.02511 -12.92399 -12.88065 -12.67449 -12.60785 -12.36361 -11.87077 -11.83694 -11.78374 -11.31853 -11.22445 -10.93362 -10.71746 -10.22161 -8.19411 -6.27996 1.15789 1.41693 1.43637 1.53017 1.66473 2.40591 2.61854 2.99301 3.07035 3.21205 3.36127 3.41820 3.79351 4.02217 4.08058 4.15300 4.23661 4.42711 4.46204 4.55674 4.61393 4.71179 4.73930 4.78827 4.80330 5.04419 5.11520 5.19412 5.26639 5.45247 5.48411 5.62845 5.71908 6.20952 6.70197 6.75476 7.38223 8.87796 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.006072 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.036680 B = 4610.185908 C = 5299.843850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 H 0.156 0.844 4 C 0.445 3.555 5 O -0.544 6.544 6 O -0.330 6.330 7 C 0.095 3.905 8 C 0.017 3.983 9 C -0.498 4.498 10 H 0.063 0.937 11 C 0.022 3.978 12 N -0.913 5.913 13 Si 0.954 3.046 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.265 1.265 17 C 0.039 3.961 18 O -0.402 6.402 19 C 0.053 3.947 20 C 0.289 3.711 21 C -0.184 4.184 22 F -0.209 7.209 23 F -0.216 7.216 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 1.451 14.335 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 H 0.174 0.826 4 C 0.289 3.711 5 O -0.435 6.435 6 O -0.245 6.245 7 C 0.021 3.979 8 C 0.016 3.984 9 C -0.536 4.536 10 H 0.081 0.919 11 C -0.178 4.178 12 N -0.551 5.551 13 Si 0.779 3.221 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.037 4.037 18 O -0.322 6.322 19 C -0.024 4.024 20 C 0.253 3.747 21 C -0.240 4.240 22 F -0.190 7.190 23 F -0.198 7.198 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.139 0.861 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.941 1.134 14.034 16.165 hybrid contribution 1.271 0.149 -0.310 1.317 sum -6.670 1.283 13.723 15.312 Atomic orbital electron populations 1.21891 0.87117 1.04192 1.06573 1.22427 1.02819 1.02680 0.86747 0.82613 1.24204 0.77294 0.82813 0.86776 1.90661 1.37050 1.27800 1.88018 1.86509 1.68337 1.55297 1.14332 1.23142 0.98562 0.92334 0.83907 1.21203 0.91773 0.96565 0.88823 1.20789 0.92243 0.90002 1.50542 0.91879 1.25660 0.96226 1.01719 0.94229 1.70007 1.00068 1.35240 1.49778 0.85605 0.77626 0.80560 0.78259 1.19915 1.21368 1.18935 1.24197 0.97473 1.00263 0.81809 1.89465 1.24188 1.91805 1.26715 1.23819 0.84711 0.97503 0.96354 1.21497 0.74103 0.80560 0.98549 1.22877 1.06620 1.01615 0.92927 1.92978 1.84967 1.43554 1.97519 1.93007 1.32563 1.96534 1.97650 0.92014 0.89638 0.86144 0.93257 0.93490 0.92808 0.90160 0.89234 0.90672 0.91649 0.85997 0.88971 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.71 71.98 0.63 -1.97 16 2 C -0.13 -3.32 2.52 -11.54 -0.03 -3.35 16 3 H 0.16 3.33 8.14 -2.39 -0.02 3.31 16 4 C 0.45 17.51 7.03 71.24 0.50 18.01 16 5 O -0.54 -25.33 14.57 21.98 0.32 -25.01 16 6 O -0.33 -14.21 9.73 -51.42 -0.50 -14.72 16 7 C 0.09 4.46 4.67 71.98 0.34 4.80 16 8 C 0.02 0.81 0.62 -52.23 -0.03 0.78 16 9 C -0.50 -25.95 7.92 25.60 0.20 -25.75 16 10 H 0.06 3.25 7.82 -2.91 -0.02 3.23 16 11 C 0.02 1.14 5.25 84.66 0.44 1.59 16 12 N -0.91 -50.48 11.31 21.45 0.24 -50.23 16 13 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 14 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 C 0.04 1.60 8.35 72.27 0.60 2.21 16 18 O -0.40 -18.77 12.40 -148.98 -1.85 -20.61 16 19 C 0.05 2.52 7.91 72.28 0.57 3.10 16 20 C 0.29 7.43 1.50 30.60 0.05 7.47 16 21 C -0.18 -2.40 9.14 71.98 0.66 -1.74 16 22 F -0.21 -6.32 15.75 44.97 0.71 -5.61 16 23 F -0.22 -7.33 15.82 44.97 0.71 -6.62 16 24 H 0.06 1.25 7.68 -2.39 -0.02 1.23 16 25 H 0.08 1.67 8.11 -2.38 -0.02 1.65 16 26 H 0.12 1.14 6.56 -2.39 -0.02 1.12 16 27 H 0.05 2.66 7.21 -2.39 -0.02 2.65 16 28 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 29 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 30 H 0.08 2.87 8.03 -2.38 -0.02 2.85 16 31 H 0.09 3.46 8.09 -2.39 -0.02 3.44 16 32 H 0.07 3.92 7.36 -2.39 -0.02 3.90 16 33 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 34 H 0.12 0.90 6.56 -2.39 -0.02 0.88 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -69.28 310.38 6.68 -62.60 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.09 Total: 11.00 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 3.93 Total: 5.14 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.24 Total: -50.23 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -2.03 Total: -60.34 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 1.42 Total: -12.23 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.28 6.68 -62.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346649221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.740 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds