Wall clock time and date at job start Tue Mar 31 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47012 * 2 1 4 4 C 1.50702 * 109.47404 * 119.99490 * 2 1 3 5 5 O 1.20827 * 119.99654 * 85.03781 * 4 2 1 6 6 O 1.34231 * 120.00219 * 265.05076 * 4 2 1 7 7 C 1.45204 * 117.00064 * 177.10512 * 6 4 2 8 8 C 1.52993 * 109.47131 * 176.71042 * 7 6 4 9 9 C 1.50703 * 113.00076 * 293.27183 * 8 7 6 10 10 H 1.07999 * 119.99627 * 116.28292 * 9 8 7 11 11 C 1.37876 * 119.99891 * 296.27708 * 9 8 7 12 12 N 1.31515 * 119.99739 * 353.97968 * 11 9 8 13 13 Si 1.86794 * 119.99940 * 173.98091 * 11 9 8 14 14 H 1.48499 * 109.47327 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47297 * 120.00117 * 13 11 9 16 16 H 1.48502 * 109.46886 * 240.00105 * 13 11 9 17 17 C 1.54036 * 113.81369 * 161.28263 * 8 7 6 18 18 O 1.44182 * 85.51863 * 223.19449 * 17 8 7 19 19 C 1.44182 * 93.33764 * 24.19507 * 18 17 8 20 20 C 1.52992 * 109.47686 * 239.99918 * 2 1 3 21 21 C 1.53006 * 109.46919 * 64.99473 * 20 2 1 22 22 F 1.39896 * 109.47673 * 184.99732 * 20 2 1 23 23 F 1.39902 * 109.46991 * 304.99866 * 20 2 1 24 24 H 1.09007 * 109.46489 * 174.21316 * 1 2 3 25 25 H 1.08996 * 109.47611 * 294.20540 * 1 2 3 26 26 H 1.08997 * 109.46988 * 54.21397 * 1 2 3 27 27 H 1.09004 * 109.46614 * 296.71121 * 7 6 4 28 28 H 1.08992 * 109.47152 * 56.70782 * 7 6 4 29 29 H 0.97001 * 119.99729 * 185.01876 * 12 11 9 30 30 H 1.08996 * 113.86776 * 337.34626 * 17 8 7 31 31 H 1.09000 * 113.86320 * 109.05488 * 17 8 7 32 32 H 1.09000 * 113.86487 * 221.65545 * 19 18 17 33 33 H 1.09005 * 113.98198 * 89.96823 * 19 18 17 34 34 H 1.09001 * 109.47032 * 60.00699 * 21 20 2 35 35 H 1.09002 * 109.46633 * 180.02562 * 21 20 2 36 36 H 1.08995 * 109.47503 * 300.00114 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1485 -1.9130 1.2287 6 8 2.3507 -0.0069 2.3286 7 6 2.7662 -0.7616 3.4974 8 6 3.1641 0.2056 4.6141 9 6 4.4019 1.0018 4.2901 10 1 4.3429 2.0757 4.1923 11 6 5.6097 0.3592 4.1187 12 7 5.7071 -0.9312 4.3535 13 14 7.1075 1.3213 3.5531 14 1 6.7364 2.7460 3.3588 15 1 8.1757 1.2231 4.5800 16 1 7.6012 0.7595 2.2701 17 6 3.1821 -0.4351 6.0147 18 8 2.5286 0.7735 6.4520 19 6 1.9961 1.0593 5.1430 20 6 2.0401 -0.7212 -1.2491 21 6 1.6353 0.0689 -2.4953 22 9 3.4343 -0.8215 -1.1931 23 9 1.4824 -2.0029 -1.3080 24 1 -0.3632 -1.0225 -0.1036 25 1 -0.3634 0.4213 0.9372 26 1 -0.3633 0.6009 -0.8336 27 1 1.9418 -1.3889 3.8367 28 1 3.6187 -1.3900 3.2400 29 1 6.5710 -1.3693 4.3037 30 1 2.5619 -1.3273 6.0996 31 1 4.1828 -0.5686 6.4257 32 1 2.0561 2.1109 4.8625 33 1 1.0136 0.6244 4.9597 34 1 2.0699 1.0675 -2.4494 35 1 1.9983 -0.4452 -3.3852 36 1 0.5490 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346649223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:11 Heat of formation + Delta-G solvation = -205.367083 kcal Electronic energy + Delta-G solvation = -23052.497594 eV Core-core repulsion = 19174.025676 eV Total energy + Delta-G solvation = -3878.471918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.87095 -46.84207 -39.95984 -39.08550 -35.90385 -34.74026 -32.94912 -30.25596 -29.72979 -26.05968 -25.41772 -25.11602 -24.19312 -22.08042 -20.00076 -19.01938 -17.68389 -17.30041 -16.97498 -16.31331 -16.07249 -15.48671 -15.34859 -14.87260 -14.43770 -14.36567 -14.05641 -13.85840 -13.34010 -13.30158 -13.03262 -12.86665 -12.65208 -12.28088 -12.25304 -12.13988 -11.86834 -11.76476 -11.55960 -11.00448 -10.88955 -10.77664 -10.48101 -10.14110 -9.96847 -9.56432 -9.38581 -9.10323 -8.74193 -8.35058 -6.18385 -4.23522 2.61570 3.07430 3.24715 3.33451 3.36599 3.67119 3.96242 4.31510 4.32142 4.49205 4.86162 4.86979 4.96510 5.13175 5.15371 5.32493 5.42546 5.49532 5.51914 5.67523 5.93259 5.98470 6.04500 6.14429 6.28695 6.36004 6.54838 6.92966 7.13809 7.26327 7.29565 7.36085 7.77780 8.15801 8.34345 8.74626 9.40961 10.88791 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.006317 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.598652 B = 4431.628906 C = 5300.355484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 H 0.130 0.870 4 C 0.456 3.544 5 O -0.502 6.502 6 O -0.333 6.333 7 C 0.080 3.920 8 C 0.033 3.967 9 C -0.491 4.491 10 H 0.067 0.933 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.898 3.102 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.051 3.949 18 O -0.389 6.389 19 C 0.031 3.969 20 C 0.302 3.698 21 C -0.193 4.193 22 F -0.194 7.194 23 F -0.187 7.187 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.266 0.734 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 2.783 -11.123 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 H 0.148 0.852 4 C 0.297 3.703 5 O -0.391 6.391 6 O -0.248 6.248 7 C 0.006 3.994 8 C 0.032 3.968 9 C -0.528 4.528 10 H 0.086 0.914 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.726 3.274 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.026 4.026 18 O -0.308 6.308 19 C -0.046 4.046 20 C 0.265 3.735 21 C -0.250 4.250 22 F -0.175 7.175 23 F -0.168 7.168 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.581 2.357 -10.881 14.689 hybrid contribution 1.070 -0.046 -0.359 1.130 sum -8.511 2.311 -11.241 14.287 Atomic orbital electron populations 1.21784 0.89882 1.04178 1.04241 1.22080 1.00132 1.02766 0.90146 0.85158 1.22911 0.75305 0.86636 0.85418 1.90683 1.49168 1.15574 1.83628 1.86462 1.75465 1.41700 1.21222 1.23590 0.98329 0.95048 0.82414 1.21108 0.94090 0.92065 0.89498 1.20649 0.91026 0.93378 1.47759 0.91450 1.24993 0.99174 0.94940 0.94625 1.69860 1.25166 1.09057 1.48398 0.86417 0.82240 0.80214 0.78545 1.19491 1.20849 1.20805 1.23909 0.97046 0.86295 0.95368 1.89491 1.70589 1.40755 1.29945 1.24010 0.96229 1.00882 0.83460 1.20776 0.75280 0.80990 0.96413 1.22812 1.04610 1.01757 0.95848 1.93070 1.30516 1.96470 1.97439 1.93043 1.84766 1.41718 1.97303 0.90747 0.90193 0.90253 0.94454 0.88912 0.92436 0.93422 0.88416 0.90375 0.92854 0.88902 0.89654 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.70 37.16 0.32 -1.14 16 2 C -0.13 -1.81 2.51 -91.77 -0.23 -2.04 16 3 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 4 C 0.46 8.99 6.58 36.01 0.24 9.22 16 5 O -0.50 -11.46 15.28 -18.75 -0.29 -11.75 16 6 O -0.33 -7.23 10.03 -39.26 -0.39 -7.62 16 7 C 0.08 1.88 4.72 37.15 0.18 2.06 16 8 C 0.03 0.80 0.56 -154.58 -0.09 0.71 16 9 C -0.49 -13.05 8.21 -34.44 -0.28 -13.33 16 10 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 11 C 0.07 1.76 5.23 -17.82 -0.09 1.66 16 12 N -0.89 -24.42 11.25 55.43 0.62 -23.80 16 13 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.05 1.20 7.94 37.61 0.30 1.50 16 18 O -0.39 -9.22 12.40 -35.23 -0.44 -9.66 16 19 C 0.03 0.67 8.26 37.61 0.31 0.98 16 20 C 0.30 4.20 1.60 -26.73 -0.04 4.15 16 21 C -0.19 -1.63 9.14 37.16 0.34 -1.29 16 22 F -0.19 -3.39 16.63 2.25 0.04 -3.35 16 23 F -0.19 -3.00 15.14 2.25 0.03 -2.97 16 24 H 0.07 0.82 7.51 -51.93 -0.39 0.43 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.53 6.85 -51.93 -0.36 0.17 16 27 H 0.04 0.82 8.04 -51.93 -0.42 0.41 16 28 H 0.09 2.50 6.72 -51.93 -0.35 2.15 16 29 H 0.27 7.03 8.32 -40.82 -0.34 6.69 16 30 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 31 H 0.10 2.48 7.56 -51.93 -0.39 2.08 16 32 H 0.08 1.61 8.08 -51.93 -0.42 1.19 16 33 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.57 6.70 -51.93 -0.35 0.22 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -31.77 311.33 -4.55 -36.31 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.75 Total: -0.40 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 0.95 Total: 2.49 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.62 Total: -23.80 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.12 Total: -29.02 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.07 Total: -6.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.77 -4.55 -36.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346649223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.053 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds