Wall clock time and date at job start Tue Mar 31 2020 01:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47012 * 2 1 4 4 C 1.50702 * 109.47404 * 119.99490 * 2 1 3 5 5 O 1.20827 * 119.99654 * 85.03781 * 4 2 1 6 6 O 1.34231 * 120.00219 * 265.05076 * 4 2 1 7 7 C 1.45204 * 117.00064 * 177.10512 * 6 4 2 8 8 C 1.52993 * 109.47131 * 176.71042 * 7 6 4 9 9 C 1.50703 * 113.00076 * 293.27183 * 8 7 6 10 10 H 1.07999 * 119.99627 * 116.28292 * 9 8 7 11 11 C 1.37876 * 119.99891 * 296.27708 * 9 8 7 12 12 N 1.31515 * 119.99739 * 353.97968 * 11 9 8 13 13 Si 1.86794 * 119.99940 * 173.98091 * 11 9 8 14 14 H 1.48499 * 109.47327 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47297 * 120.00117 * 13 11 9 16 16 H 1.48502 * 109.46886 * 240.00105 * 13 11 9 17 17 C 1.54036 * 113.81369 * 161.28263 * 8 7 6 18 18 O 1.44182 * 85.51863 * 223.19449 * 17 8 7 19 19 C 1.44182 * 93.33764 * 24.19507 * 18 17 8 20 20 C 1.52992 * 109.47686 * 239.99918 * 2 1 3 21 21 C 1.53006 * 109.46919 * 64.99473 * 20 2 1 22 22 F 1.39896 * 109.47673 * 184.99732 * 20 2 1 23 23 F 1.39902 * 109.46991 * 304.99866 * 20 2 1 24 24 H 1.09007 * 109.46489 * 174.21316 * 1 2 3 25 25 H 1.08996 * 109.47611 * 294.20540 * 1 2 3 26 26 H 1.08997 * 109.46988 * 54.21397 * 1 2 3 27 27 H 1.09004 * 109.46614 * 296.71121 * 7 6 4 28 28 H 1.08992 * 109.47152 * 56.70782 * 7 6 4 29 29 H 0.97001 * 119.99729 * 185.01876 * 12 11 9 30 30 H 1.08996 * 113.86776 * 337.34626 * 17 8 7 31 31 H 1.09000 * 113.86320 * 109.05488 * 17 8 7 32 32 H 1.09000 * 113.86487 * 221.65545 * 19 18 17 33 33 H 1.09005 * 113.98198 * 89.96823 * 19 18 17 34 34 H 1.09001 * 109.47032 * 60.00699 * 21 20 2 35 35 H 1.09002 * 109.46633 * 180.02562 * 21 20 2 36 36 H 1.08995 * 109.47503 * 300.00114 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1485 -1.9130 1.2287 6 8 2.3507 -0.0069 2.3286 7 6 2.7662 -0.7616 3.4974 8 6 3.1641 0.2056 4.6141 9 6 4.4019 1.0018 4.2901 10 1 4.3429 2.0757 4.1923 11 6 5.6097 0.3592 4.1187 12 7 5.7071 -0.9312 4.3535 13 14 7.1075 1.3213 3.5531 14 1 6.7364 2.7460 3.3588 15 1 8.1757 1.2231 4.5800 16 1 7.6012 0.7595 2.2701 17 6 3.1821 -0.4351 6.0147 18 8 2.5286 0.7735 6.4520 19 6 1.9961 1.0593 5.1430 20 6 2.0401 -0.7212 -1.2491 21 6 1.6353 0.0689 -2.4953 22 9 3.4343 -0.8215 -1.1931 23 9 1.4824 -2.0029 -1.3080 24 1 -0.3632 -1.0225 -0.1036 25 1 -0.3634 0.4213 0.9372 26 1 -0.3633 0.6009 -0.8336 27 1 1.9418 -1.3889 3.8367 28 1 3.6187 -1.3900 3.2400 29 1 6.5710 -1.3693 4.3037 30 1 2.5619 -1.3273 6.0996 31 1 4.1828 -0.5686 6.4257 32 1 2.0561 2.1109 4.8625 33 1 1.0136 0.6244 4.9597 34 1 2.0699 1.0675 -2.4494 35 1 1.9983 -0.4452 -3.3852 36 1 0.5490 0.1471 -2.5390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346649223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:10 Heat of formation + Delta-G solvation = -225.591774 kcal Electronic energy + Delta-G solvation = -23053.374603 eV Core-core repulsion = 19174.025676 eV Total energy + Delta-G solvation = -3879.348927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.03095 -48.03565 -41.63685 -40.85322 -37.55051 -35.85702 -34.94319 -31.91521 -30.78196 -27.58860 -27.18505 -26.70840 -25.82654 -23.37407 -21.33227 -20.90591 -19.03782 -18.62815 -18.44090 -17.92870 -17.55308 -17.05864 -16.83345 -16.69488 -16.21046 -16.16245 -15.71656 -15.07806 -14.69220 -14.45587 -14.20866 -14.03752 -13.88761 -13.69297 -13.58127 -13.46178 -13.05052 -12.97479 -12.89458 -12.71581 -12.62479 -12.38222 -11.91406 -11.87549 -11.78401 -11.30000 -11.23772 -10.96768 -10.71034 -10.25168 -8.21985 -6.32473 1.09976 1.37046 1.40690 1.50784 1.64682 2.36790 2.61387 2.96980 3.05881 3.19031 3.34615 3.38592 3.78531 3.99012 4.13299 4.16825 4.21972 4.42298 4.45141 4.56434 4.60502 4.70323 4.71055 4.75399 4.78424 5.03432 5.12537 5.19341 5.20097 5.45266 5.50304 5.60758 5.70118 6.18927 6.68177 6.71891 7.34326 8.83979 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.006317 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.598652 B = 4431.628906 C = 5300.355484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 H 0.157 0.843 4 C 0.446 3.554 5 O -0.542 6.542 6 O -0.339 6.339 7 C 0.092 3.908 8 C 0.016 3.984 9 C -0.504 4.504 10 H 0.063 0.937 11 C 0.020 3.980 12 N -0.912 5.912 13 Si 0.952 3.048 14 H -0.260 1.260 15 H -0.278 1.278 16 H -0.287 1.287 17 C 0.055 3.945 18 O -0.402 6.402 19 C 0.043 3.957 20 C 0.283 3.717 21 C -0.182 4.182 22 F -0.223 7.223 23 F -0.205 7.205 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.349 4.690 -12.606 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 H 0.174 0.826 4 C 0.290 3.710 5 O -0.433 6.433 6 O -0.254 6.254 7 C 0.017 3.983 8 C 0.015 3.985 9 C -0.541 4.541 10 H 0.081 0.919 11 C -0.180 4.180 12 N -0.550 5.550 13 Si 0.778 3.222 14 H -0.184 1.184 15 H -0.204 1.204 16 H -0.213 1.213 17 C -0.023 4.023 18 O -0.321 6.321 19 C -0.033 4.033 20 C 0.247 3.753 21 C -0.239 4.239 22 F -0.204 7.204 23 F -0.187 7.187 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.145 0.855 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.168 4.286 -12.367 17.206 hybrid contribution 1.526 -0.672 0.093 1.670 sum -9.642 3.614 -12.274 16.021 Atomic orbital electron populations 1.21896 0.86702 1.04476 1.06526 1.22404 1.02516 1.03031 0.86581 0.82568 1.24248 0.73924 0.86671 0.86176 1.90660 1.50835 1.17547 1.84218 1.86466 1.75652 1.41740 1.21506 1.23203 0.97165 0.94629 0.83264 1.21192 0.94728 0.92805 0.89774 1.20915 0.92214 0.93423 1.47581 0.91866 1.25682 1.01710 0.95730 0.94853 1.69969 1.25459 1.10207 1.49341 0.85575 0.79396 0.79491 0.77760 1.18396 1.20401 1.21324 1.23816 0.96366 0.87152 0.94917 1.89465 1.70833 1.40770 1.31080 1.24109 0.96418 1.01222 0.81563 1.21621 0.73800 0.80874 0.99024 1.22869 1.06684 1.01639 0.92669 1.93012 1.33072 1.96605 1.97706 1.93004 1.84838 1.43325 1.97493 0.91996 0.89805 0.85521 0.93349 0.93007 0.92689 0.91364 0.90891 0.89379 0.89885 0.86791 0.89133 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.70 71.98 0.63 -1.73 16 2 C -0.13 -3.19 2.51 -11.54 -0.03 -3.22 16 3 H 0.16 3.11 8.14 -2.38 -0.02 3.09 16 4 C 0.45 17.48 6.58 71.24 0.47 17.95 16 5 O -0.54 -25.36 15.28 21.96 0.34 -25.02 16 6 O -0.34 -14.56 10.03 -51.43 -0.52 -15.08 16 7 C 0.09 4.37 4.72 71.98 0.34 4.71 16 8 C 0.02 0.75 0.56 -52.23 -0.03 0.73 16 9 C -0.50 -26.88 8.21 25.60 0.21 -26.67 16 10 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 11 C 0.02 1.10 5.23 84.65 0.44 1.55 16 12 N -0.91 -51.51 11.25 21.45 0.24 -51.27 16 13 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 14 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 C 0.05 2.58 7.94 72.27 0.57 3.16 16 18 O -0.40 -18.65 12.40 -148.98 -1.85 -20.50 16 19 C 0.04 1.78 8.26 72.28 0.60 2.38 16 20 C 0.28 7.40 1.60 30.59 0.05 7.45 16 21 C -0.18 -2.37 9.14 71.98 0.66 -1.72 16 22 F -0.22 -7.77 16.63 44.97 0.75 -7.02 16 23 F -0.21 -6.48 15.14 44.97 0.68 -5.80 16 24 H 0.06 1.23 7.51 -2.38 -0.02 1.21 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.13 0.97 6.85 -2.39 -0.02 0.95 16 27 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 28 H 0.05 2.90 6.72 -2.39 -0.02 2.88 16 29 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 30 H 0.07 2.91 8.03 -2.39 -0.02 2.89 16 31 H 0.07 3.79 7.56 -2.39 -0.02 3.77 16 32 H 0.09 3.43 8.08 -2.39 -0.02 3.41 16 33 H 0.08 2.92 8.10 -2.38 -0.02 2.91 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 0.86 6.70 -2.39 -0.02 0.84 16 Total: -1.00 -71.65 311.33 6.66 -64.99 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.09 Total: 9.63 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 3.91 Total: 4.58 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.24 Total: -51.27 kcal Atomic # 8 Polarization: -58.57 SS G_CDS: -2.03 Total: -60.60 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 1.43 Total: -12.82 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.65 6.66 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346649223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.603 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds