Wall clock time and date at job start Tue Mar 31 2020 01:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34746 * 117.00197 * 2 1 4 4 O 1.21508 * 119.99934 * 359.97438 * 3 2 1 5 5 C 1.47470 * 120.00088 * 179.97438 * 3 2 1 6 6 C 1.40336 * 120.48855 * 179.97438 * 5 3 2 7 7 C 1.36929 * 118.47670 * 179.74521 * 6 5 3 8 8 C 1.39272 * 119.38873 * 0.54233 * 7 6 5 9 9 N 1.38943 * 119.52530 * 179.71992 * 8 7 6 10 10 C 1.34777 * 119.99990 * 185.08971 * 9 8 7 11 11 O 1.21269 * 120.00283 * 354.90598 * 10 9 8 12 12 C 1.50704 * 120.00044 * 174.90468 * 10 9 8 13 13 H 1.09004 * 109.47215 * 59.99866 * 12 10 9 14 14 C 1.52997 * 109.46996 * 300.00026 * 12 10 9 15 15 C 1.50694 * 109.47269 * 179.97438 * 12 10 9 16 16 H 1.08010 * 119.99809 * 0.02562 * 15 12 10 17 17 C 1.37876 * 120.00488 * 180.02562 * 15 12 10 18 18 N 1.31521 * 119.99710 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00473 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47014 * 59.99832 * 19 17 15 21 21 H 1.48502 * 109.47210 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47267 * 299.99827 * 19 17 15 23 23 N 1.32543 * 120.94868 * 359.44682 * 8 7 6 24 24 C 1.31652 * 121.65499 * 0.27468 * 23 8 7 25 25 H 1.08996 * 109.47220 * 300.00429 * 1 2 3 26 26 H 1.09002 * 109.46698 * 60.00248 * 1 2 3 27 27 H 1.09003 * 109.47270 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.76187 * 0.04617 * 6 5 3 29 29 H 1.08004 * 120.30635 * 180.25972 * 7 6 5 30 30 H 0.97001 * 120.00215 * 5.09957 * 9 8 7 31 31 H 1.09000 * 109.47031 * 60.00050 * 14 12 10 32 32 H 1.09000 * 109.47252 * 300.00421 * 14 12 10 33 33 H 1.08995 * 109.47235 * 179.97438 * 14 12 10 34 34 H 0.96990 * 120.00154 * 180.02562 * 18 17 15 35 35 H 1.08006 * 119.74819 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5365 1.2777 0.0006 6 6 4.1842 2.5226 0.0000 7 6 5.5533 2.5462 0.0060 8 6 6.2576 1.3447 0.0008 9 7 7.6469 1.3654 0.0009 10 6 8.3380 0.2134 -0.1076 11 8 7.7510 -0.8478 -0.1123 12 6 9.8403 0.2439 -0.2232 13 1 10.2630 0.7224 0.6602 14 6 10.2398 1.0336 -1.4713 15 6 10.3646 -1.1648 -0.3303 16 1 9.6785 -1.9989 -0.3165 17 6 11.7201 -1.3890 -0.4459 18 7 12.5555 -0.3733 -0.4632 19 14 12.3700 -3.1352 -0.5793 20 1 11.7946 -3.7868 -1.7833 21 1 13.8503 -3.1051 -0.6930 22 1 11.9816 -3.9018 0.6318 23 7 5.6216 0.1818 0.0012 24 6 4.3069 0.1134 0.0011 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.6159 3.4410 -0.0001 29 1 6.0822 3.4879 0.0099 30 1 8.1194 2.2089 0.0791 31 1 9.8605 2.0525 -1.3934 32 1 9.8170 0.5552 -2.3547 33 1 11.3263 1.0561 -1.5547 34 1 13.5090 -0.5310 -0.5449 35 1 3.8205 -0.8510 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351265080.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:35 Heat of formation + Delta-G solvation = -73.907027 kcal Electronic energy + Delta-G solvation = -20680.666961 eV Core-core repulsion = 17258.584765 eV Total energy + Delta-G solvation = -3422.082196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.96178 -40.09019 -38.50126 -36.55922 -34.57269 -33.86864 -32.56580 -31.10639 -30.07294 -27.76777 -25.24011 -24.66725 -23.94108 -22.49457 -21.18742 -19.68417 -18.11816 -18.09591 -17.15729 -16.49994 -16.32459 -16.03256 -15.32534 -14.92939 -14.72218 -14.46240 -14.10959 -13.75600 -13.30611 -13.23667 -13.00124 -12.76543 -12.54579 -12.32898 -11.69400 -11.07567 -10.99496 -10.87910 -10.81425 -10.76290 -10.59811 -10.28269 -10.04533 -9.99803 -9.59187 -9.09641 -8.57760 -8.36396 -8.21639 -6.11008 -4.14990 0.54526 1.26386 2.43875 2.53883 3.20718 3.33390 3.35915 3.42900 3.44768 3.99743 4.37685 4.46029 4.63708 4.77997 4.89426 4.91521 4.96574 4.97158 5.22842 5.29293 5.53435 5.69694 5.90951 5.99136 6.20362 6.25409 6.48382 6.68749 6.75321 6.87464 7.30018 7.47129 7.59870 7.70290 7.92936 8.08873 8.29549 8.93001 8.96850 9.51199 10.96633 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036027 B = 0.003456 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.003512 B = 8099.172875 C = 8777.700448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.523 3.477 4 O -0.518 6.518 5 C -0.243 4.243 6 C 0.019 3.981 7 C -0.232 4.232 8 C 0.412 3.588 9 N -0.663 5.663 10 C 0.503 3.497 11 O -0.464 6.464 12 C 0.034 3.966 13 H 0.057 0.943 14 C -0.135 4.135 15 C -0.506 4.506 16 H 0.075 0.925 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.275 1.275 23 N -0.485 5.485 24 C 0.203 3.797 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.417 0.583 31 H 0.012 0.988 32 H 0.033 0.967 33 H 0.097 0.903 34 H 0.263 0.737 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.940 6.713 0.821 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.369 3.631 4 O -0.407 6.407 5 C -0.249 4.249 6 C -0.007 4.007 7 C -0.256 4.256 8 C 0.178 3.822 9 N -0.308 5.308 10 C 0.292 3.708 11 O -0.330 6.330 12 C 0.013 3.987 13 H 0.074 0.926 14 C -0.193 4.193 15 C -0.544 4.544 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.200 5.200 24 C 0.042 3.958 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.254 0.746 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.696 5.416 0.782 17.570 hybrid contribution -0.084 0.502 -0.050 0.511 sum -16.780 5.918 0.732 17.808 Atomic orbital electron populations 1.23263 0.76045 1.03748 1.02508 1.86560 1.23502 1.32674 1.84443 1.20891 0.88696 0.81331 0.72198 1.90815 1.66849 1.36023 1.47057 1.19892 0.90055 0.96229 1.18729 1.21071 0.93493 0.97101 0.89000 1.21212 0.94517 0.98177 1.11718 1.19145 0.86177 0.89524 0.87322 1.44561 1.02453 1.13089 1.70702 1.22568 0.92212 0.81991 0.74023 1.90661 1.70795 1.29169 1.42414 1.18938 0.83124 0.99558 0.97124 0.92564 1.21785 1.05477 0.94710 0.97337 1.21077 0.92150 0.90993 1.50197 0.90644 1.24938 0.96697 0.97579 0.94854 1.69847 1.02982 1.30125 1.50564 0.86462 0.77226 0.84273 0.78960 1.20105 1.21342 1.20082 1.68047 1.09335 1.25764 1.16887 1.23207 0.88201 0.97882 0.86523 0.91895 0.91898 0.87960 0.83587 0.83790 0.74588 0.96850 0.94773 0.88494 0.92755 0.81243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.99 9.83 -40.62 -0.40 -4.39 16 3 C 0.52 6.75 7.90 34.49 0.27 7.02 16 4 O -0.52 -7.52 16.20 -19.27 -0.31 -7.83 16 5 C -0.24 -3.19 5.89 -104.83 -0.62 -3.81 16 6 C 0.02 0.22 9.65 -39.27 -0.38 -0.16 16 7 C -0.23 -2.79 9.86 -39.67 -0.39 -3.18 16 8 C 0.41 6.60 7.41 -154.90 -1.15 5.45 16 9 N -0.66 -11.07 5.22 -11.44 -0.06 -11.13 16 10 C 0.50 11.01 7.10 -10.98 -0.08 10.93 16 11 O -0.46 -11.75 13.70 5.57 0.08 -11.68 16 12 C 0.03 0.80 2.63 -92.93 -0.24 0.55 16 13 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.14 -2.93 8.87 37.16 0.33 -2.60 16 15 C -0.51 -13.87 8.37 -34.44 -0.29 -14.16 16 16 H 0.08 2.19 6.75 -52.48 -0.35 1.83 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.90 -24.37 11.32 55.43 0.63 -23.74 16 19 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 N -0.49 -8.74 7.85 -12.05 -0.09 -8.83 16 24 C 0.20 2.95 10.79 -17.11 -0.18 2.77 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.15 1.45 7.73 -52.49 -0.41 1.04 16 29 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.42 5.38 8.27 -40.82 -0.34 5.04 16 31 H 0.01 0.22 7.69 -51.93 -0.40 -0.18 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.33 6.07 -51.93 -0.32 2.02 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 35 H 0.17 2.12 7.62 -52.48 -0.40 1.72 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -32.95 310.54 -6.14 -39.09 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.88 Total: 1.76 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.76 Total: 5.72 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.47 Total: -43.70 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.64 Total: -23.90 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.95 -6.14 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351265080.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.816 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds