Wall clock time and date at job start Tue Mar 31 2020 01:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34746 * 117.00197 * 2 1 4 4 O 1.21508 * 119.99934 * 359.97438 * 3 2 1 5 5 C 1.47470 * 120.00088 * 179.97438 * 3 2 1 6 6 C 1.40336 * 120.48855 * 179.97438 * 5 3 2 7 7 C 1.36929 * 118.47670 * 179.74521 * 6 5 3 8 8 C 1.39272 * 119.38873 * 0.54233 * 7 6 5 9 9 N 1.38943 * 119.52530 * 179.71992 * 8 7 6 10 10 C 1.34777 * 119.99990 * 185.08971 * 9 8 7 11 11 O 1.21269 * 120.00283 * 354.90598 * 10 9 8 12 12 C 1.50704 * 120.00044 * 174.90468 * 10 9 8 13 13 H 1.09004 * 109.47215 * 59.99866 * 12 10 9 14 14 C 1.52997 * 109.46996 * 300.00026 * 12 10 9 15 15 C 1.50694 * 109.47269 * 179.97438 * 12 10 9 16 16 H 1.08010 * 119.99809 * 0.02562 * 15 12 10 17 17 C 1.37876 * 120.00488 * 180.02562 * 15 12 10 18 18 N 1.31521 * 119.99710 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00473 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47014 * 59.99832 * 19 17 15 21 21 H 1.48502 * 109.47210 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47267 * 299.99827 * 19 17 15 23 23 N 1.32543 * 120.94868 * 359.44682 * 8 7 6 24 24 C 1.31652 * 121.65499 * 0.27468 * 23 8 7 25 25 H 1.08996 * 109.47220 * 300.00429 * 1 2 3 26 26 H 1.09002 * 109.46698 * 60.00248 * 1 2 3 27 27 H 1.09003 * 109.47270 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.76187 * 0.04617 * 6 5 3 29 29 H 1.08004 * 120.30635 * 180.25972 * 7 6 5 30 30 H 0.97001 * 120.00215 * 5.09957 * 9 8 7 31 31 H 1.09000 * 109.47031 * 60.00050 * 14 12 10 32 32 H 1.09000 * 109.47252 * 300.00421 * 14 12 10 33 33 H 1.08995 * 109.47235 * 179.97438 * 14 12 10 34 34 H 0.96990 * 120.00154 * 180.02562 * 18 17 15 35 35 H 1.08006 * 119.74819 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5365 1.2777 0.0006 6 6 4.1842 2.5226 0.0000 7 6 5.5533 2.5462 0.0060 8 6 6.2576 1.3447 0.0008 9 7 7.6469 1.3654 0.0009 10 6 8.3380 0.2134 -0.1076 11 8 7.7510 -0.8478 -0.1123 12 6 9.8403 0.2439 -0.2232 13 1 10.2630 0.7224 0.6602 14 6 10.2398 1.0336 -1.4713 15 6 10.3646 -1.1648 -0.3303 16 1 9.6785 -1.9989 -0.3165 17 6 11.7201 -1.3890 -0.4459 18 7 12.5555 -0.3733 -0.4632 19 14 12.3700 -3.1352 -0.5793 20 1 11.7946 -3.7868 -1.7833 21 1 13.8503 -3.1051 -0.6930 22 1 11.9816 -3.9018 0.6318 23 7 5.6216 0.1818 0.0012 24 6 4.3069 0.1134 0.0011 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.6159 3.4410 -0.0001 29 1 6.0822 3.4879 0.0099 30 1 8.1194 2.2089 0.0791 31 1 9.8605 2.0525 -1.3934 32 1 9.8170 0.5552 -2.3547 33 1 11.3263 1.0561 -1.5547 34 1 13.5090 -0.5310 -0.5449 35 1 3.8205 -0.8510 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351265080.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:34 Heat of formation + Delta-G solvation = -95.073112 kcal Electronic energy + Delta-G solvation = -20681.584791 eV Core-core repulsion = 17258.584765 eV Total energy + Delta-G solvation = -3423.000027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09249 -41.23406 -39.92714 -37.52425 -36.00576 -35.79060 -33.66866 -32.75679 -31.45825 -28.54921 -27.21455 -25.93350 -25.06333 -24.00177 -22.25996 -21.20779 -19.39060 -19.11635 -18.31904 -18.03880 -17.64100 -17.40251 -16.76833 -16.35565 -16.24235 -15.67848 -15.20545 -15.05308 -14.75816 -14.43297 -14.15989 -14.13138 -13.78604 -13.50524 -13.01388 -12.97026 -12.72961 -12.59479 -12.26350 -12.01881 -11.84508 -11.81550 -11.80782 -11.08677 -11.06398 -10.96551 -10.51404 -9.96428 -9.42688 -8.16208 -6.26287 -0.56018 0.25693 1.34073 1.42762 1.43601 1.51926 1.66944 1.90657 1.96254 2.45148 2.82624 3.14402 3.31975 3.65832 3.80359 3.84839 4.02827 4.28021 4.32264 4.36514 4.61542 4.71533 4.73378 4.79497 4.92119 4.96593 5.01313 5.15565 5.27694 5.47655 5.63700 5.74210 5.90462 6.14047 6.32849 6.62647 6.80257 6.99443 7.36138 7.46927 8.89367 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036027 B = 0.003456 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.003512 B = 8099.172875 C = 8777.700448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.527 3.473 4 O -0.533 6.533 5 C -0.235 4.235 6 C 0.021 3.979 7 C -0.204 4.204 8 C 0.382 3.618 9 N -0.650 5.650 10 C 0.510 3.490 11 O -0.511 6.511 12 C 0.030 3.970 13 H 0.051 0.949 14 C -0.123 4.123 15 C -0.533 4.533 16 H 0.049 0.951 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.953 3.047 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.277 1.277 23 N -0.533 5.533 24 C 0.191 3.809 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.131 0.869 28 H 0.173 0.827 29 H 0.186 0.814 30 H 0.435 0.565 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.266 0.734 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 8.319 0.768 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.373 3.627 4 O -0.425 6.425 5 C -0.240 4.240 6 C -0.004 4.004 7 C -0.227 4.227 8 C 0.150 3.850 9 N -0.297 5.297 10 C 0.299 3.701 11 O -0.381 6.381 12 C 0.009 3.991 13 H 0.069 0.931 14 C -0.181 4.181 15 C -0.571 4.571 16 H 0.067 0.933 17 C -0.176 4.176 18 N -0.548 5.548 19 Si 0.779 3.221 20 H -0.203 1.203 21 H -0.200 1.200 22 H -0.202 1.202 23 N -0.248 5.248 24 C 0.031 3.969 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.191 0.809 29 H 0.204 0.796 30 H 0.276 0.724 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.909 7.067 0.733 19.267 hybrid contribution 0.099 0.038 -0.012 0.107 sum -17.810 7.106 0.720 19.189 Atomic orbital electron populations 1.23600 0.74007 1.05866 1.02825 1.86556 1.25514 1.31771 1.83854 1.20819 0.88534 0.81571 0.71780 1.90808 1.67139 1.36604 1.47942 1.20071 0.90370 0.96472 1.17122 1.21431 0.93566 0.97500 0.87926 1.21514 0.94431 0.98107 1.08669 1.19367 0.85574 0.90588 0.89461 1.43973 1.03115 1.12169 1.70461 1.22063 0.91656 0.82763 0.73617 1.90639 1.71416 1.31138 1.44929 1.18846 0.84809 0.97818 0.97675 0.93136 1.21598 1.03846 0.96879 0.95734 1.21251 0.92363 0.92421 1.51068 0.93277 1.25531 0.96788 1.00742 0.94557 1.69918 1.03136 1.31226 1.50500 0.85682 0.77231 0.80596 0.78564 1.20292 1.19959 1.20232 1.67868 1.11020 1.27876 1.18060 1.23291 0.87343 0.98990 0.87237 0.91560 0.91609 0.85064 0.80933 0.79644 0.72434 0.92312 0.95985 0.90807 0.92500 0.80492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.60 16 2 O -0.36 -7.55 9.83 -56.56 -0.56 -8.11 16 3 C 0.53 12.66 7.90 70.26 0.55 13.22 16 4 O -0.53 -14.35 16.20 19.81 0.32 -14.03 16 5 C -0.23 -5.75 5.89 -20.00 -0.12 -5.86 16 6 C 0.02 0.43 9.65 22.47 0.22 0.64 16 7 C -0.20 -4.22 9.86 22.21 0.22 -4.00 16 8 C 0.38 11.74 7.41 133.07 0.99 12.73 16 9 N -0.65 -20.97 5.22 -308.51 -1.61 -22.59 16 10 C 0.51 22.61 7.10 87.66 0.62 23.24 16 11 O -0.51 -26.84 13.70 -3.00 -0.04 -26.89 16 12 C 0.03 1.43 2.63 -12.29 -0.03 1.39 16 13 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.12 -5.25 8.87 71.98 0.64 -4.61 16 15 C -0.53 -30.06 8.37 25.60 0.21 -29.85 16 16 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 17 C 0.02 1.28 5.30 84.65 0.45 1.73 16 18 N -0.91 -49.57 11.32 21.45 0.24 -49.33 16 19 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 N -0.53 -19.25 7.85 -192.05 -1.51 -20.76 16 24 C 0.19 5.50 10.79 85.05 0.92 6.41 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.17 2.68 7.73 -2.91 -0.02 2.66 16 29 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.44 10.19 8.27 -92.71 -0.77 9.42 16 31 H 0.06 1.92 7.69 -2.39 -0.02 1.91 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 34 H 0.27 13.79 8.31 -92.72 -0.77 13.02 16 35 H 0.18 4.50 7.62 -2.91 -0.02 4.48 16 Total: -1.00 -73.31 310.54 5.11 -68.21 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.37 Total: 10.55 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 5.87 Total: 16.64 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -2.88 Total: -92.67 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -0.28 Total: -49.02 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.31 5.11 -68.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351265080.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.868 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds