Wall clock time and date at job start Tue Mar 31 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34739 * 117.00215 * 2 1 4 4 O 1.21506 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.47473 * 120.00128 * 180.02562 * 3 2 1 6 6 C 1.40337 * 120.48923 * 179.97438 * 5 3 2 7 7 C 1.36927 * 118.47777 * 179.72136 * 6 5 3 8 8 C 1.39285 * 119.38731 * 0.28405 * 7 6 5 9 9 N 1.38945 * 119.52478 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00008 * 174.91678 * 9 8 7 11 11 O 1.21266 * 119.99859 * 5.09660 * 10 9 8 12 12 C 1.50696 * 119.99598 * 185.09139 * 10 9 8 13 13 H 1.08998 * 109.47593 * 299.99731 * 12 10 9 14 14 C 1.52994 * 109.47399 * 60.00501 * 12 10 9 15 15 C 1.50704 * 109.46982 * 180.02562 * 12 10 9 16 16 H 1.08006 * 119.99380 * 0.02562 * 15 12 10 17 17 C 1.37869 * 120.00193 * 179.97438 * 15 12 10 18 18 N 1.31517 * 120.00379 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00018 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47382 * 90.00312 * 19 17 15 21 21 H 1.48497 * 109.47520 * 210.00429 * 19 17 15 22 22 H 1.48499 * 109.47238 * 330.00334 * 19 17 15 23 23 N 1.32534 * 120.94815 * 359.97167 * 8 7 6 24 24 C 1.31661 * 121.66084 * 0.02562 * 23 8 7 25 25 H 1.08997 * 109.47375 * 59.99596 * 1 2 3 26 26 H 1.09000 * 109.47480 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47137 * 299.99595 * 1 2 3 28 28 H 1.08000 * 120.75909 * 359.97438 * 6 5 3 29 29 H 1.07998 * 120.30875 * 180.25649 * 7 6 5 30 30 H 0.97005 * 120.00082 * 354.91740 * 9 8 7 31 31 H 1.09000 * 109.47301 * 179.97438 * 14 12 10 32 32 H 1.09005 * 109.47266 * 299.99473 * 14 12 10 33 33 H 1.08997 * 109.47378 * 59.99652 * 14 12 10 34 34 H 0.96993 * 120.00442 * 179.97438 * 18 17 15 35 35 H 1.07992 * 119.74962 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2777 -0.0006 6 6 4.1842 2.5226 -0.0011 7 6 5.5532 2.5462 0.0042 8 6 6.2576 1.3445 0.0040 9 7 7.6469 1.3652 0.0088 10 6 8.3376 0.2124 0.1121 11 8 7.7505 -0.8486 0.1076 12 6 9.8394 0.2423 0.2329 13 1 10.2652 0.7265 -0.6459 14 6 10.2347 1.0236 1.4875 15 6 10.3634 -1.1672 0.3324 16 1 9.6774 -2.0011 0.3100 17 6 11.7185 -1.3921 0.4511 18 7 12.5538 -0.3767 0.4780 19 14 12.3680 -3.1393 0.5738 20 1 12.6531 -3.6582 -0.7880 21 1 13.6163 -3.1481 1.3781 22 1 11.3511 -4.0006 1.2288 23 7 5.6216 0.1818 -0.0008 24 6 4.3068 0.1132 -0.0060 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.6159 3.4410 -0.0015 29 1 6.0821 3.4878 0.0081 30 1 8.1197 2.2092 -0.0621 31 1 11.3210 1.0448 1.5752 32 1 9.8558 2.0431 1.4152 33 1 9.8090 0.5393 2.3663 34 1 13.5071 -0.5349 0.5619 35 1 3.8205 -0.8510 -0.0093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351265081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:38 Heat of formation + Delta-G solvation = -73.926678 kcal Electronic energy + Delta-G solvation = -20681.117858 eV Core-core repulsion = 17259.034809 eV Total energy + Delta-G solvation = -3422.083048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96159 -40.09076 -38.50152 -36.55971 -34.57230 -33.87015 -32.56545 -31.10663 -30.07316 -27.76794 -25.24193 -24.66701 -23.94141 -22.49535 -21.18742 -19.68404 -18.11812 -18.09606 -17.15732 -16.50048 -16.32567 -16.03504 -15.32575 -14.92820 -14.72365 -14.46021 -14.10909 -13.75525 -13.30397 -13.23734 -13.00035 -12.76534 -12.55029 -12.32873 -11.70009 -11.08110 -10.99483 -10.86877 -10.81385 -10.78088 -10.58551 -10.27840 -10.04530 -9.99727 -9.59071 -9.08718 -8.57996 -8.36735 -8.21570 -6.11224 -4.15122 0.54551 1.26392 2.43905 2.53905 3.20739 3.30729 3.36766 3.44522 3.45210 3.99809 4.37690 4.46012 4.63750 4.78013 4.89429 4.91516 4.96572 4.97180 5.22761 5.29321 5.53483 5.69727 5.90977 5.99125 6.20397 6.25435 6.48319 6.68699 6.75298 6.87461 7.29941 7.47114 7.59898 7.70262 7.92923 8.08804 8.29486 8.93294 8.96880 9.51191 10.96451 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036015 B = 0.003457 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.268580 B = 8098.565748 C = 8776.541086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.523 3.477 4 O -0.518 6.518 5 C -0.243 4.243 6 C 0.019 3.981 7 C -0.232 4.232 8 C 0.412 3.588 9 N -0.664 5.664 10 C 0.503 3.497 11 O -0.464 6.464 12 C 0.033 3.967 13 H 0.057 0.943 14 C -0.135 4.135 15 C -0.505 4.505 16 H 0.076 0.924 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 N -0.485 5.485 24 C 0.203 3.797 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.417 0.583 31 H 0.097 0.903 32 H 0.013 0.987 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.957 6.714 -0.812 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.369 3.631 4 O -0.407 6.407 5 C -0.249 4.249 6 C -0.007 4.007 7 C -0.256 4.256 8 C 0.178 3.822 9 N -0.308 5.308 10 C 0.292 3.708 11 O -0.330 6.330 12 C 0.012 3.988 13 H 0.074 0.926 14 C -0.193 4.193 15 C -0.543 4.543 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.730 3.270 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.196 1.196 23 N -0.200 5.200 24 C 0.042 3.958 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.254 0.746 31 H 0.115 0.885 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.719 5.415 -0.773 17.591 hybrid contribution -0.069 0.510 0.034 0.515 sum -16.788 5.925 -0.739 17.818 Atomic orbital electron populations 1.23262 0.76046 1.03749 1.02509 1.86558 1.23501 1.32676 1.84440 1.20890 0.88697 0.81331 0.72200 1.90815 1.66848 1.36024 1.47058 1.19894 0.90053 0.96229 1.18729 1.21070 0.93493 0.97100 0.89005 1.21214 0.94515 0.98178 1.11715 1.19147 0.86178 0.89524 0.87319 1.44565 1.02457 1.13016 1.70770 1.22564 0.92202 0.81992 0.74035 1.90662 1.70761 1.29203 1.42398 1.18944 0.83148 0.99610 0.97093 0.92564 1.21783 1.05480 0.94734 0.97309 1.21118 0.92190 0.90968 1.50044 0.90588 1.24937 0.96707 0.97579 0.94870 1.69855 1.02947 1.30070 1.50643 0.86411 0.78149 0.84321 0.78134 1.20586 1.21256 1.19638 1.68045 1.09337 1.25769 1.16888 1.23208 0.88198 0.97879 0.86520 0.91896 0.87961 0.91899 0.83588 0.83791 0.74589 0.88491 0.96842 0.94772 0.92814 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.99 9.83 -40.60 -0.40 -4.39 16 3 C 0.52 6.75 7.90 34.49 0.27 7.02 16 4 O -0.52 -7.52 16.20 -19.27 -0.31 -7.83 16 5 C -0.24 -3.19 5.89 -104.83 -0.62 -3.81 16 6 C 0.02 0.22 9.65 -39.27 -0.38 -0.16 16 7 C -0.23 -2.79 9.86 -39.67 -0.39 -3.18 16 8 C 0.41 6.60 7.41 -154.91 -1.15 5.45 16 9 N -0.66 -11.07 5.22 -11.44 -0.06 -11.13 16 10 C 0.50 11.00 7.10 -10.99 -0.08 10.92 16 11 O -0.46 -11.75 13.70 5.57 0.08 -11.68 16 12 C 0.03 0.78 2.63 -92.93 -0.24 0.54 16 13 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.14 -2.93 8.87 37.15 0.33 -2.60 16 15 C -0.50 -13.84 8.37 -34.44 -0.29 -14.13 16 16 H 0.08 2.21 6.75 -52.48 -0.35 1.85 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -24.36 11.32 55.43 0.63 -23.74 16 19 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.49 -8.74 7.85 -12.05 -0.09 -8.83 16 24 C 0.20 2.95 10.79 -17.11 -0.18 2.77 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.15 1.45 7.73 -52.49 -0.41 1.04 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.42 5.38 8.27 -40.82 -0.34 5.04 16 31 H 0.10 2.33 6.07 -51.93 -0.32 2.02 16 32 H 0.01 0.22 7.69 -51.93 -0.40 -0.17 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.17 2.12 7.61 -52.49 -0.40 1.72 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -32.97 310.53 -6.14 -39.12 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.88 Total: 1.73 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.76 Total: 5.73 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.47 Total: -43.70 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.64 Total: -23.90 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.97 -6.14 -39.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351265081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.810 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds