Wall clock time and date at job start Tue Mar 31 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34739 * 117.00215 * 2 1 4 4 O 1.21506 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.47473 * 120.00128 * 180.02562 * 3 2 1 6 6 C 1.40337 * 120.48923 * 179.97438 * 5 3 2 7 7 C 1.36927 * 118.47777 * 179.72136 * 6 5 3 8 8 C 1.39285 * 119.38731 * 0.28405 * 7 6 5 9 9 N 1.38945 * 119.52478 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00008 * 174.91678 * 9 8 7 11 11 O 1.21266 * 119.99859 * 5.09660 * 10 9 8 12 12 C 1.50696 * 119.99598 * 185.09139 * 10 9 8 13 13 H 1.08998 * 109.47593 * 299.99731 * 12 10 9 14 14 C 1.52994 * 109.47399 * 60.00501 * 12 10 9 15 15 C 1.50704 * 109.46982 * 180.02562 * 12 10 9 16 16 H 1.08006 * 119.99380 * 0.02562 * 15 12 10 17 17 C 1.37869 * 120.00193 * 179.97438 * 15 12 10 18 18 N 1.31517 * 120.00379 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00018 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47382 * 90.00312 * 19 17 15 21 21 H 1.48497 * 109.47520 * 210.00429 * 19 17 15 22 22 H 1.48499 * 109.47238 * 330.00334 * 19 17 15 23 23 N 1.32534 * 120.94815 * 359.97167 * 8 7 6 24 24 C 1.31661 * 121.66084 * 0.02562 * 23 8 7 25 25 H 1.08997 * 109.47375 * 59.99596 * 1 2 3 26 26 H 1.09000 * 109.47480 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47137 * 299.99595 * 1 2 3 28 28 H 1.08000 * 120.75909 * 359.97438 * 6 5 3 29 29 H 1.07998 * 120.30875 * 180.25649 * 7 6 5 30 30 H 0.97005 * 120.00082 * 354.91740 * 9 8 7 31 31 H 1.09000 * 109.47301 * 179.97438 * 14 12 10 32 32 H 1.09005 * 109.47266 * 299.99473 * 14 12 10 33 33 H 1.08997 * 109.47378 * 59.99652 * 14 12 10 34 34 H 0.96993 * 120.00442 * 179.97438 * 18 17 15 35 35 H 1.07992 * 119.74962 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2777 -0.0006 6 6 4.1842 2.5226 -0.0011 7 6 5.5532 2.5462 0.0042 8 6 6.2576 1.3445 0.0040 9 7 7.6469 1.3652 0.0088 10 6 8.3376 0.2124 0.1121 11 8 7.7505 -0.8486 0.1076 12 6 9.8394 0.2423 0.2329 13 1 10.2652 0.7265 -0.6459 14 6 10.2347 1.0236 1.4875 15 6 10.3634 -1.1672 0.3324 16 1 9.6774 -2.0011 0.3100 17 6 11.7185 -1.3921 0.4511 18 7 12.5538 -0.3767 0.4780 19 14 12.3680 -3.1393 0.5738 20 1 12.6531 -3.6582 -0.7880 21 1 13.6163 -3.1481 1.3781 22 1 11.3511 -4.0006 1.2288 23 7 5.6216 0.1818 -0.0008 24 6 4.3068 0.1132 -0.0060 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.6159 3.4410 -0.0015 29 1 6.0821 3.4878 0.0081 30 1 8.1197 2.2092 -0.0621 31 1 11.3210 1.0448 1.5752 32 1 9.8558 2.0431 1.4152 33 1 9.8090 0.5393 2.3663 34 1 13.5071 -0.5349 0.5619 35 1 3.8205 -0.8510 -0.0093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351265081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:38 Heat of formation + Delta-G solvation = -95.119584 kcal Electronic energy + Delta-G solvation = -20682.036851 eV Core-core repulsion = 17259.034809 eV Total energy + Delta-G solvation = -3423.002042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.09221 -41.23492 -39.92737 -37.52488 -36.00548 -35.79197 -33.66836 -32.75719 -31.45804 -28.54953 -27.21636 -25.93337 -25.06376 -24.00214 -22.25997 -21.20744 -19.39071 -19.11638 -18.32060 -18.04101 -17.64179 -17.40308 -16.76831 -16.35493 -16.24112 -15.67896 -15.20422 -15.05235 -14.75788 -14.43679 -14.16179 -14.13080 -13.78617 -13.50932 -13.01374 -12.97242 -12.72362 -12.59916 -12.25588 -12.02986 -11.84331 -11.81712 -11.80810 -11.08098 -11.05971 -10.96716 -10.51509 -9.96386 -9.42636 -8.16405 -6.26387 -0.55994 0.25704 1.34090 1.41460 1.42782 1.53947 1.66967 1.90626 1.96368 2.45122 2.82674 3.14258 3.31961 3.65856 3.80373 3.84841 4.02852 4.28044 4.32254 4.36499 4.61591 4.71551 4.73376 4.79518 4.92166 4.96622 5.01319 5.15594 5.27720 5.47659 5.63752 5.74288 5.90442 6.14057 6.32812 6.62673 6.80478 6.99481 7.36189 7.46971 8.89359 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036015 B = 0.003457 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.268580 B = 8098.565748 C = 8776.541086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.527 3.473 4 O -0.533 6.533 5 C -0.235 4.235 6 C 0.021 3.979 7 C -0.204 4.204 8 C 0.382 3.618 9 N -0.650 5.650 10 C 0.510 3.490 11 O -0.511 6.511 12 C 0.029 3.971 13 H 0.051 0.949 14 C -0.123 4.123 15 C -0.531 4.531 16 H 0.049 0.951 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.275 1.275 22 H -0.280 1.280 23 N -0.533 5.533 24 C 0.191 3.809 25 H 0.066 0.934 26 H 0.131 0.869 27 H 0.065 0.935 28 H 0.173 0.827 29 H 0.186 0.814 30 H 0.435 0.565 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.110 8.335 -0.767 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.373 3.627 4 O -0.425 6.425 5 C -0.240 4.240 6 C -0.004 4.004 7 C -0.227 4.227 8 C 0.150 3.850 9 N -0.297 5.297 10 C 0.299 3.701 11 O -0.381 6.381 12 C 0.008 3.992 13 H 0.069 0.931 14 C -0.181 4.181 15 C -0.570 4.570 16 H 0.067 0.933 17 C -0.176 4.176 18 N -0.548 5.548 19 Si 0.779 3.221 20 H -0.201 1.201 21 H -0.200 1.200 22 H -0.205 1.205 23 N -0.248 5.248 24 C 0.031 3.969 25 H 0.084 0.916 26 H 0.149 0.851 27 H 0.084 0.916 28 H 0.191 0.809 29 H 0.204 0.796 30 H 0.276 0.724 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.904 7.081 -0.734 19.267 hybrid contribution 0.107 0.041 0.000 0.115 sum -17.797 7.122 -0.734 19.183 Atomic orbital electron populations 1.23599 0.74009 1.05867 1.02826 1.86554 1.25513 1.31775 1.83851 1.20818 0.88535 0.81571 0.71781 1.90807 1.67139 1.36604 1.47942 1.20073 0.90369 0.96471 1.17122 1.21430 0.93567 0.97498 0.87932 1.21516 0.94428 0.98106 1.08666 1.19369 0.85576 0.90586 0.89456 1.43976 1.03118 1.12096 1.70529 1.22060 0.91648 0.82764 0.73623 1.90639 1.71386 1.31179 1.44917 1.18851 0.84825 0.97849 0.97665 0.93124 1.21598 1.03846 0.96912 0.95701 1.21276 0.92387 0.92373 1.50933 0.93299 1.25528 0.96796 1.00740 0.94572 1.69923 1.03134 1.31171 1.50576 0.85625 0.77624 0.80556 0.78271 1.20057 1.19983 1.20485 1.67865 1.11022 1.27883 1.18062 1.23291 0.87341 0.98986 0.87238 0.91557 0.85065 0.91610 0.80934 0.79644 0.72433 0.90807 0.92304 0.95978 0.92512 0.80498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.60 16 2 O -0.36 -7.55 9.83 -56.49 -0.56 -8.11 16 3 C 0.53 12.67 7.90 70.26 0.55 13.22 16 4 O -0.53 -14.36 16.20 19.82 0.32 -14.03 16 5 C -0.23 -5.75 5.89 -20.00 -0.12 -5.87 16 6 C 0.02 0.43 9.65 22.47 0.22 0.64 16 7 C -0.20 -4.21 9.86 22.21 0.22 -3.99 16 8 C 0.38 11.74 7.41 133.08 0.99 12.73 16 9 N -0.65 -20.97 5.22 -308.51 -1.61 -22.58 16 10 C 0.51 22.62 7.10 87.66 0.62 23.24 16 11 O -0.51 -26.86 13.70 -2.99 -0.04 -26.90 16 12 C 0.03 1.40 2.63 -12.29 -0.03 1.37 16 13 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 14 C -0.12 -5.25 8.87 71.98 0.64 -4.61 16 15 C -0.53 -29.99 8.37 25.60 0.21 -29.77 16 16 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 17 C 0.02 1.27 5.30 84.65 0.45 1.72 16 18 N -0.91 -49.55 11.32 21.44 0.24 -49.31 16 19 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 23 N -0.53 -19.26 7.85 -192.04 -1.51 -20.77 16 24 C 0.19 5.50 10.79 85.05 0.92 6.42 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.17 2.68 7.73 -2.91 -0.02 2.66 16 29 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.44 10.19 8.27 -92.70 -0.77 9.42 16 31 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 32 H 0.06 1.93 7.69 -2.38 -0.02 1.91 16 33 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 35 H 0.18 4.50 7.61 -2.91 -0.02 4.48 16 Total: -1.00 -73.39 310.53 5.11 -68.29 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.37 Total: 10.41 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 5.87 Total: 16.70 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -2.88 Total: -92.66 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.28 Total: -49.05 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.39 5.11 -68.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351265081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.834 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds