Wall clock time and date at job start Tue Mar 31 2020 01:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47272 * 2 1 4 4 C 1.50703 * 109.46858 * 240.00481 * 2 1 3 5 5 H 1.08000 * 119.99484 * 274.97605 * 4 2 1 6 6 C 1.37872 * 120.00262 * 94.98237 * 4 2 1 7 7 N 1.31511 * 119.99936 * 184.90362 * 6 4 2 8 8 Si 1.86807 * 119.99890 * 4.89604 * 6 4 2 9 9 H 1.48501 * 109.46676 * 84.83626 * 8 6 4 10 10 H 1.48499 * 109.47031 * 204.83457 * 8 6 4 11 11 H 1.48496 * 109.47106 * 324.83797 * 8 6 4 12 12 N 1.46501 * 109.47443 * 120.00392 * 2 1 3 13 13 C 1.46494 * 120.00093 * 59.99628 * 12 2 1 14 14 S 1.65605 * 120.00007 * 239.99974 * 12 2 1 15 15 O 1.42100 * 106.40008 * 23.53563 * 14 12 2 16 16 O 1.42097 * 106.40327 * 156.45882 * 14 12 2 17 17 N 1.65600 * 107.21691 * 269.99928 * 14 12 2 18 18 C 1.47143 * 120.87104 * 89.99710 * 17 14 12 19 19 C 1.53393 * 108.21384 * 129.40666 * 18 17 14 20 20 C 1.53147 * 108.94722 * 51.82289 * 19 18 17 21 21 O 1.42932 * 109.51254 * 300.94435 * 20 19 18 22 22 C 1.42681 * 114.05290 * 62.33205 * 21 20 19 23 23 H 1.08994 * 109.47189 * 174.97728 * 1 2 3 24 24 H 1.09006 * 109.46669 * 294.97349 * 1 2 3 25 25 H 1.08994 * 109.47312 * 54.97277 * 1 2 3 26 26 H 0.97005 * 119.99883 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47490 * 270.00108 * 13 12 2 28 28 H 1.09005 * 109.47370 * 149.99996 * 13 12 2 29 29 H 1.09002 * 109.47408 * 30.00327 * 13 12 2 30 30 H 1.08997 * 109.71554 * 249.08098 * 18 17 14 31 31 H 1.09000 * 109.72103 * 9.68344 * 18 17 14 32 32 H 1.08997 * 109.56256 * 171.66634 * 19 18 17 33 33 H 1.09003 * 109.55784 * 291.88055 * 19 18 17 34 34 H 1.09007 * 109.45901 * 60.95695 * 20 19 18 35 35 H 1.08997 * 109.46369 * 180.92698 * 20 19 18 36 36 H 1.09007 * 109.54376 * 184.76752 * 22 21 20 37 37 H 1.08994 * 109.44063 * 64.41915 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1357 -1.7854 -1.2290 6 6 2.3598 0.0122 -2.3582 7 7 2.7056 -0.6131 -3.4623 8 14 2.3121 1.8792 -2.3178 9 1 3.5975 2.3956 -1.7827 10 1 2.1040 2.3989 -3.6933 11 1 1.1971 2.3271 -1.4454 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 2.6905 1.4972 2.1192 16 8 2.8230 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8179 18 6 5.1942 0.8380 0.8936 19 6 6.5317 1.2677 1.5095 20 6 7.3247 0.0166 1.8985 21 8 6.5688 -0.7563 2.8335 22 6 5.3294 -1.2414 2.3194 23 1 -0.3633 -1.0237 -0.0900 24 1 -0.3633 0.4339 0.9317 25 1 -0.3633 0.5898 -0.8415 26 1 2.9357 -0.1048 -4.2558 27 1 0.7377 -2.1445 1.9993 28 1 2.4630 -2.5820 1.9862 29 1 1.5295 -2.5969 0.4707 30 1 5.3707 0.3501 -0.0650 31 1 4.5575 1.7110 0.7501 32 1 7.0991 1.8477 0.7816 33 1 6.3471 1.8747 2.3958 34 1 7.5207 -0.5807 1.0079 35 1 8.2705 0.3126 2.3524 36 1 4.7777 -1.7453 3.1131 37 1 5.5228 -1.9397 1.5052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463684186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:52 Heat of formation + Delta-G solvation = -112.817873 kcal Electronic energy + Delta-G solvation = -21912.833152 eV Core-core repulsion = 18624.507607 eV Total energy + Delta-G solvation = -3288.325546 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.08863 -36.90598 -36.34641 -35.38291 -34.34208 -32.56008 -31.97863 -29.98412 -25.81038 -25.54616 -25.24513 -25.04108 -21.18855 -20.61860 -18.61888 -17.62496 -17.33796 -16.76783 -16.36434 -15.64837 -15.26571 -14.94582 -14.69754 -14.34099 -13.72975 -13.62743 -13.22742 -12.99528 -12.67891 -12.58597 -12.03234 -11.94544 -11.80446 -11.72199 -11.50935 -11.24430 -11.24031 -11.05881 -10.88716 -10.81314 -10.74761 -10.43966 -9.89471 -9.83967 -9.44233 -8.94965 -8.71383 -8.11228 -6.28294 -4.28998 1.04803 3.14194 3.25485 3.29049 3.32728 3.86220 3.96469 4.24141 4.69316 4.82935 4.94859 5.04751 5.10739 5.32033 5.40907 5.52177 5.55470 5.57754 5.80464 5.93483 6.03576 6.10480 6.18987 6.26076 6.33693 6.40981 6.50343 6.63079 6.64294 6.94119 7.10346 7.15450 7.38564 7.60537 8.33001 8.76594 9.33029 10.83431 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.009244 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.997405 B = 3028.178800 C = 3724.806014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.232 3.768 3 H 0.055 0.945 4 C -0.519 4.519 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.887 5.887 8 Si 0.856 3.144 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.985 5.985 13 C 0.105 3.895 14 S 2.778 3.222 15 O -0.982 6.982 16 O -0.992 6.992 17 N -1.024 6.024 18 C 0.116 3.884 19 C -0.167 4.167 20 C 0.063 3.937 21 O -0.388 6.388 22 C 0.292 3.708 23 H 0.053 0.947 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.267 0.733 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 0.135 7.606 9.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.073 0.927 4 C -0.558 4.558 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.682 3.318 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.183 1.183 12 N -0.828 5.828 13 C -0.041 4.041 14 S 2.789 3.211 15 O -0.966 6.966 16 O -0.976 6.976 17 N -0.869 5.869 18 C -0.009 4.009 19 C -0.206 4.206 20 C -0.014 4.014 21 O -0.304 6.304 22 C 0.129 3.871 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.560 0.590 8.400 10.091 hybrid contribution 0.087 0.835 -0.889 1.223 sum 5.648 1.425 7.511 9.505 Atomic orbital electron populations 1.22159 0.97811 1.01175 0.99168 1.19116 0.91911 0.92855 0.83203 0.92699 1.21187 1.43973 0.96028 0.94656 0.89934 1.24959 0.94151 0.98057 0.95314 1.69881 1.44948 1.35949 1.01643 0.87181 0.80134 0.86608 0.77847 1.19440 1.20939 1.18300 1.57979 1.64184 1.21557 1.39036 1.21217 0.99089 0.81750 1.02034 1.02064 0.72347 0.73537 0.73199 1.93547 1.83765 1.32421 1.86848 1.93533 1.85838 1.76202 1.42010 1.58898 1.31083 1.36787 1.60163 1.21490 0.94134 0.93033 0.92281 1.22491 0.97178 0.98712 1.02210 1.22511 0.94063 0.91656 0.93170 1.87908 1.31896 1.70090 1.40457 1.22486 0.81492 0.85755 0.97376 0.92802 0.95328 0.92667 0.92309 0.93703 0.93012 0.89976 0.90316 0.88843 0.89821 0.90712 0.92674 0.88887 0.86484 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.10 37.16 0.34 -2.61 16 2 C 0.23 5.23 2.28 -69.08 -0.16 5.07 16 3 H 0.06 1.31 4.06 -51.93 -0.21 1.10 16 4 C -0.52 -13.04 8.72 -34.44 -0.30 -13.34 16 5 H 0.08 2.21 6.82 -52.49 -0.36 1.86 16 6 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -24.80 13.96 55.43 0.77 -24.03 16 8 Si 0.86 20.05 26.99 -169.99 -4.59 15.46 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -5.97 6.82 56.52 0.39 -5.58 16 12 N -0.99 -19.66 3.12 -115.86 -0.36 -20.02 16 13 C 0.11 1.78 9.44 59.84 0.56 2.35 16 14 S 2.78 54.83 6.11 -107.50 -0.66 54.17 16 15 O -0.98 -21.80 15.31 -57.17 -0.88 -22.67 16 16 O -0.99 -20.14 15.81 -57.17 -0.90 -21.04 16 17 N -1.02 -17.75 3.46 -118.55 -0.41 -18.17 16 18 C 0.12 1.92 6.59 -3.49 -0.02 1.89 16 19 C -0.17 -2.18 6.32 -26.45 -0.17 -2.35 16 20 C 0.06 0.77 6.80 37.23 0.25 1.02 16 21 O -0.39 -5.76 10.84 -35.23 -0.38 -6.14 16 22 C 0.29 4.39 7.46 60.14 0.45 4.83 16 23 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 29 H 0.08 1.43 6.56 -51.93 -0.34 1.09 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.67 6.94 -51.93 -0.36 1.31 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.12 1.69 6.92 -51.92 -0.36 1.33 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -30.49 307.33 -7.31 -37.80 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.40 Total: 1.14 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 0.86 Total: -1.13 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.00 Total: -62.21 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -2.16 Total: -49.86 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.59 Total: 15.46 kcal Atomic # 16 Polarization: 54.83 SS G_CDS: -0.66 Total: 54.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.49 -7.31 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463684186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.017 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds