Wall clock time and date at job start Tue Mar 31 2020 01:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47272 * 2 1 4 4 C 1.50703 * 109.46858 * 240.00481 * 2 1 3 5 5 H 1.08000 * 119.99484 * 274.97605 * 4 2 1 6 6 C 1.37872 * 120.00262 * 94.98237 * 4 2 1 7 7 N 1.31511 * 119.99936 * 184.90362 * 6 4 2 8 8 Si 1.86807 * 119.99890 * 4.89604 * 6 4 2 9 9 H 1.48501 * 109.46676 * 84.83626 * 8 6 4 10 10 H 1.48499 * 109.47031 * 204.83457 * 8 6 4 11 11 H 1.48496 * 109.47106 * 324.83797 * 8 6 4 12 12 N 1.46501 * 109.47443 * 120.00392 * 2 1 3 13 13 C 1.46494 * 120.00093 * 59.99628 * 12 2 1 14 14 S 1.65605 * 120.00007 * 239.99974 * 12 2 1 15 15 O 1.42100 * 106.40008 * 23.53563 * 14 12 2 16 16 O 1.42097 * 106.40327 * 156.45882 * 14 12 2 17 17 N 1.65600 * 107.21691 * 269.99928 * 14 12 2 18 18 C 1.47143 * 120.87104 * 89.99710 * 17 14 12 19 19 C 1.53393 * 108.21384 * 129.40666 * 18 17 14 20 20 C 1.53147 * 108.94722 * 51.82289 * 19 18 17 21 21 O 1.42932 * 109.51254 * 300.94435 * 20 19 18 22 22 C 1.42681 * 114.05290 * 62.33205 * 21 20 19 23 23 H 1.08994 * 109.47189 * 174.97728 * 1 2 3 24 24 H 1.09006 * 109.46669 * 294.97349 * 1 2 3 25 25 H 1.08994 * 109.47312 * 54.97277 * 1 2 3 26 26 H 0.97005 * 119.99883 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47490 * 270.00108 * 13 12 2 28 28 H 1.09005 * 109.47370 * 149.99996 * 13 12 2 29 29 H 1.09002 * 109.47408 * 30.00327 * 13 12 2 30 30 H 1.08997 * 109.71554 * 249.08098 * 18 17 14 31 31 H 1.09000 * 109.72103 * 9.68344 * 18 17 14 32 32 H 1.08997 * 109.56256 * 171.66634 * 19 18 17 33 33 H 1.09003 * 109.55784 * 291.88055 * 19 18 17 34 34 H 1.09007 * 109.45901 * 60.95695 * 20 19 18 35 35 H 1.08997 * 109.46369 * 180.92698 * 20 19 18 36 36 H 1.09007 * 109.54376 * 184.76752 * 22 21 20 37 37 H 1.08994 * 109.44063 * 64.41915 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1357 -1.7854 -1.2290 6 6 2.3598 0.0122 -2.3582 7 7 2.7056 -0.6131 -3.4623 8 14 2.3121 1.8792 -2.3178 9 1 3.5975 2.3956 -1.7827 10 1 2.1040 2.3989 -3.6933 11 1 1.1971 2.3271 -1.4454 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 2.6905 1.4972 2.1192 16 8 2.8230 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8179 18 6 5.1942 0.8380 0.8936 19 6 6.5317 1.2677 1.5095 20 6 7.3247 0.0166 1.8985 21 8 6.5688 -0.7563 2.8335 22 6 5.3294 -1.2414 2.3194 23 1 -0.3633 -1.0237 -0.0900 24 1 -0.3633 0.4339 0.9317 25 1 -0.3633 0.5898 -0.8415 26 1 2.9357 -0.1048 -4.2558 27 1 0.7377 -2.1445 1.9993 28 1 2.4630 -2.5820 1.9862 29 1 1.5295 -2.5969 0.4707 30 1 5.3707 0.3501 -0.0650 31 1 4.5575 1.7110 0.7501 32 1 7.0991 1.8477 0.7816 33 1 6.3471 1.8747 2.3958 34 1 7.5207 -0.5807 1.0079 35 1 8.2705 0.3126 2.3524 36 1 4.7777 -1.7453 3.1131 37 1 5.5228 -1.9397 1.5052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463684186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:51 Heat of formation + Delta-G solvation = -136.453114 kcal Electronic energy + Delta-G solvation = -21913.858053 eV Core-core repulsion = 18624.507607 eV Total energy + Delta-G solvation = -3289.350447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23011 -38.53093 -38.00977 -37.01073 -35.59093 -34.49327 -33.10048 -31.68801 -27.36914 -27.04254 -26.71613 -26.24889 -22.54517 -22.18365 -20.04394 -19.28848 -18.94000 -18.41736 -17.74446 -17.09381 -16.50029 -16.32672 -15.97036 -15.85555 -15.32043 -14.97206 -14.65435 -14.50139 -14.39801 -14.20912 -13.57357 -13.44729 -13.31868 -13.26353 -13.09878 -13.02370 -12.60394 -12.49459 -12.37643 -12.22961 -12.06691 -11.94758 -11.78969 -11.31135 -10.95202 -10.71810 -10.22733 -9.72885 -8.30783 -6.33659 -0.48272 1.29823 1.37045 1.45110 1.81144 2.30605 2.41525 2.80860 3.06483 3.21194 3.63831 3.85872 3.96701 4.02181 4.26379 4.29083 4.40153 4.42829 4.57198 4.67557 4.71068 4.75494 4.83580 4.87056 4.92374 5.00319 5.11413 5.14699 5.24756 5.38927 5.46567 5.53699 5.92822 6.04076 6.34165 6.72637 7.31508 8.84083 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.009244 C = 0.007515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.997405 B = 3028.178800 C = 3724.806014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.234 3.766 3 H 0.044 0.956 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.038 3.962 7 N -0.930 5.930 8 Si 0.894 3.106 9 H -0.258 1.258 10 H -0.282 1.282 11 H -0.254 1.254 12 N -0.991 5.991 13 C 0.099 3.901 14 S 2.790 3.210 15 O -1.008 7.008 16 O -0.998 6.998 17 N -1.025 6.025 18 C 0.107 3.893 19 C -0.161 4.161 20 C 0.057 3.943 21 O -0.399 6.399 22 C 0.287 3.713 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.267 0.733 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 0.416 8.665 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.062 0.938 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.163 4.163 7 N -0.569 5.569 8 Si 0.719 3.281 9 H -0.182 1.182 10 H -0.208 1.208 11 H -0.178 1.178 12 N -0.833 5.833 13 C -0.047 4.047 14 S 2.800 3.200 15 O -0.993 6.993 16 O -0.982 6.982 17 N -0.873 5.873 18 C -0.018 4.018 19 C -0.200 4.200 20 C -0.019 4.019 21 O -0.314 6.314 22 C 0.125 3.875 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.337 0.860 9.476 11.432 hybrid contribution -0.115 0.674 -1.150 1.338 sum 6.221 1.533 8.325 10.506 Atomic orbital electron populations 1.22123 0.96329 1.01964 0.99939 1.18958 0.93067 0.92053 0.82947 0.93847 1.21289 1.42881 0.95048 0.95597 0.92260 1.25497 0.94334 1.01322 0.95109 1.69980 1.47232 1.37323 1.02393 0.86545 0.80811 0.82851 0.77936 1.18245 1.20761 1.17758 1.57816 1.64722 1.22697 1.38059 1.21419 1.00833 0.80203 1.02210 1.01520 0.72706 0.72781 0.72955 1.93509 1.84498 1.34083 1.87175 1.93520 1.86253 1.76167 1.42215 1.58770 1.30443 1.37785 1.60271 1.21610 0.95576 0.92204 0.92402 1.22506 0.95568 0.99470 1.02497 1.22769 0.94534 0.90998 0.93572 1.87897 1.31609 1.70439 1.41458 1.22684 0.81673 0.85107 0.98027 0.91869 0.93662 0.93006 0.92317 0.92003 0.90821 0.90813 0.90824 0.90675 0.87196 0.91112 0.91683 0.86027 0.86117 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 9.10 71.98 0.65 -5.06 16 2 C 0.23 10.35 2.28 44.25 0.10 10.45 16 3 H 0.04 2.04 4.06 -2.39 -0.01 2.03 16 4 C -0.51 -25.59 8.72 25.60 0.22 -25.37 16 5 H 0.06 3.22 6.82 -2.91 -0.02 3.20 16 6 C 0.04 1.98 5.47 84.65 0.46 2.44 16 7 N -0.93 -52.65 13.96 21.44 0.30 -52.35 16 8 Si 0.89 40.80 26.99 68.60 1.85 42.65 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.25 -11.27 6.82 99.48 0.68 -10.59 16 12 N -0.99 -38.39 3.12 -520.46 -1.62 -40.02 16 13 C 0.10 3.19 9.44 127.77 1.21 4.39 16 14 S 2.79 106.89 6.11 -56.49 -0.35 106.55 16 15 O -1.01 -44.07 15.31 -128.00 -1.96 -46.03 16 16 O -1.00 -38.86 15.81 -128.00 -2.02 -40.88 16 17 N -1.03 -34.24 3.46 -629.23 -2.18 -36.42 16 18 C 0.11 3.42 6.59 86.39 0.57 3.99 16 19 C -0.16 -3.85 6.32 30.78 0.19 -3.66 16 20 C 0.06 1.23 6.80 72.03 0.49 1.72 16 21 O -0.40 -10.87 10.84 -148.98 -1.61 -12.49 16 22 C 0.29 8.09 7.46 127.67 0.95 9.05 16 23 H 0.06 2.35 7.84 -2.39 -0.02 2.33 16 24 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.03 7.79 -2.38 -0.02 2.01 16 29 H 0.07 2.51 6.56 -2.39 -0.02 2.49 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.66 6.94 -2.39 -0.02 2.64 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.12 3.27 6.92 -2.38 -0.02 3.25 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.11 307.33 -1.71 -65.82 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.03 Total: 15.19 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.85 Total: -2.03 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -3.50 Total: -128.78 kcal Atomic # 8 Polarization: -93.80 SS G_CDS: -5.60 Total: -99.40 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.85 Total: 42.65 kcal Atomic # 16 Polarization: 106.89 SS G_CDS: -0.35 Total: 106.55 kcal Total: -64.11 -1.71 -65.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463684186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.630 kcal (2) G-P(sol) polarization free energy of solvation -64.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds