Wall clock time and date at job start Tue Mar 31 2020 01:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.47150 * 120.87224 * 89.99581 * 17 14 12 19 19 C 1.53393 * 108.21279 * 129.40507 * 18 17 14 20 20 C 1.53147 * 108.94389 * 51.83348 * 19 18 17 21 21 O 1.42941 * 109.51238 * 300.93657 * 20 19 18 22 22 C 1.42681 * 114.05033 * 62.32617 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 1.08992 * 109.71597 * 249.08630 * 18 17 14 31 31 H 1.08997 * 109.71200 * 9.68999 * 18 17 14 32 32 H 1.08999 * 109.55885 * 171.66765 * 19 18 17 33 33 H 1.09003 * 109.56403 * 291.88710 * 19 18 17 34 34 H 1.09000 * 109.46700 * 60.94673 * 20 19 18 35 35 H 1.08995 * 109.46442 * 180.92778 * 20 19 18 36 36 H 1.08999 * 109.54565 * 184.76650 * 22 21 20 37 37 H 1.09004 * 109.43200 * 64.42769 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8074 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.3280 -1.2458 -2.3152 19 6 6.6588 -0.7122 -2.8603 20 6 7.3148 0.1699 -1.7941 21 8 6.4399 1.2510 -1.4643 22 6 5.1956 0.8406 -0.8994 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 5.5180 -1.9442 -1.5003 31 1 4.7796 -1.7498 -3.1111 32 1 7.3170 -1.5477 -3.0982 33 1 6.4754 -0.1245 -3.7599 34 1 7.5106 -0.4241 -0.9013 35 1 8.2540 0.5672 -2.1790 36 1 4.5556 1.7111 -0.7554 37 1 5.3756 0.3536 0.0590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463684187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:55 Heat of formation + Delta-G solvation = -113.903726 kcal Electronic energy + Delta-G solvation = -21702.471265 eV Core-core repulsion = 18414.098633 eV Total energy + Delta-G solvation = -3288.372632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.06374 -36.81815 -36.17740 -35.30098 -34.35082 -32.64656 -31.97621 -29.12265 -25.74090 -25.41784 -25.22297 -25.04104 -21.19446 -20.74184 -18.60475 -17.46423 -16.97477 -16.50627 -16.35529 -15.48731 -15.20189 -15.00229 -14.68646 -14.38859 -13.79410 -13.49924 -13.19175 -12.99373 -12.75797 -12.05279 -11.88193 -11.83307 -11.66600 -11.43155 -11.29226 -11.24889 -11.07905 -10.98482 -10.91136 -10.84413 -10.48184 -10.26039 -10.13573 -9.81956 -9.33481 -8.92959 -8.52974 -8.00771 -6.14003 -4.23331 1.11924 3.21602 3.27738 3.28380 3.36072 3.94233 4.04183 4.30844 4.73573 4.80671 4.84825 5.10754 5.16166 5.30122 5.41057 5.54988 5.57327 5.68120 5.71858 5.80313 6.10132 6.13484 6.18692 6.31612 6.55020 6.66222 6.83849 6.87427 7.07909 7.19591 7.44397 7.57265 7.73158 8.00385 8.20931 8.79629 9.43320 10.90809 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.007810 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.077182 B = 3584.348532 C = 4322.871907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.784 3.216 15 O -0.994 6.994 16 O -0.976 6.976 17 N -1.026 6.026 18 C 0.116 3.884 19 C -0.166 4.166 20 C 0.062 3.938 21 O -0.388 6.388 22 C 0.293 3.707 23 H 0.012 0.988 24 H 0.093 0.907 25 H 0.032 0.968 26 H 0.265 0.735 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -4.872 -6.548 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.793 3.207 15 O -0.978 6.978 16 O -0.960 6.960 17 N -0.872 5.872 18 C -0.010 4.010 19 C -0.205 4.205 20 C -0.015 4.015 21 O -0.303 6.303 22 C 0.131 3.869 23 H 0.032 0.968 24 H 0.111 0.889 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.649 -4.012 -7.172 11.931 hybrid contribution 0.359 -1.076 1.319 1.739 sum 9.008 -5.087 -5.854 11.886 Atomic orbital electron populations 1.22048 0.97848 0.99699 1.00800 1.18748 0.92024 0.92668 0.80186 0.92422 1.21329 1.32140 1.13211 0.90142 0.91987 1.24926 0.94915 0.94955 0.98973 1.69866 1.35928 1.22491 1.24013 0.86590 0.79115 0.79675 0.82154 1.20286 1.21204 1.20301 1.57787 1.63998 1.21499 1.39928 1.21180 0.98921 0.81952 1.01839 1.01856 0.72227 0.73442 0.73143 1.93520 1.85849 1.76378 1.42077 1.93575 1.83605 1.32121 1.86744 1.59007 1.31206 1.35442 1.61529 1.21432 0.92538 0.87812 0.99193 1.22477 0.97375 1.00708 0.99977 1.22487 0.92839 0.89184 0.97038 1.87943 1.27579 1.32246 1.82529 1.22564 0.82953 0.92530 0.88892 0.96850 0.88871 0.94850 0.92492 0.93813 0.93343 0.90160 0.91292 0.88908 0.90012 0.90610 0.92908 0.88986 0.85834 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.27 6.38 2.62 -69.08 -0.18 6.20 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.53 -13.16 7.99 -34.44 -0.28 -13.44 16 5 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.80 11.32 55.43 0.63 -23.18 16 8 Si 0.90 19.92 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.99 -20.31 3.12 -115.85 -0.36 -20.68 16 13 C 0.11 1.88 9.29 59.85 0.56 2.44 16 14 S 2.78 55.50 6.11 -107.50 -0.66 54.84 16 15 O -0.99 -20.37 15.82 -57.17 -0.90 -21.27 16 16 O -0.98 -22.44 15.30 -57.17 -0.87 -23.32 16 17 N -1.03 -17.33 3.46 -118.56 -0.41 -17.74 16 18 C 0.12 1.55 6.59 -3.48 -0.02 1.53 16 19 C -0.17 -1.87 6.32 -26.45 -0.17 -2.04 16 20 C 0.06 0.72 6.80 37.23 0.25 0.98 16 21 O -0.39 -6.08 10.84 -35.23 -0.38 -6.47 16 22 C 0.29 4.92 7.46 60.13 0.45 5.37 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 29 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.23 6.94 -51.93 -0.36 0.87 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.12 2.24 6.92 -51.93 -0.36 1.88 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -30.26 308.26 -7.95 -38.22 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.46 Total: 0.49 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 0.85 Total: -0.45 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.14 Total: -61.59 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -2.16 Total: -51.05 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 55.50 SS G_CDS: -0.66 Total: 54.84 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.26 -7.95 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463684187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.688 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds