Wall clock time and date at job start Tue Mar 31 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.47150 * 120.87224 * 89.99581 * 17 14 12 19 19 C 1.53393 * 108.21279 * 129.40507 * 18 17 14 20 20 C 1.53147 * 108.94389 * 51.83348 * 19 18 17 21 21 O 1.42941 * 109.51238 * 300.93657 * 20 19 18 22 22 C 1.42681 * 114.05033 * 62.32617 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 28 28 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 29 29 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 30 30 H 1.08992 * 109.71597 * 249.08630 * 18 17 14 31 31 H 1.08997 * 109.71200 * 9.68999 * 18 17 14 32 32 H 1.08999 * 109.55885 * 171.66765 * 19 18 17 33 33 H 1.09003 * 109.56403 * 291.88710 * 19 18 17 34 34 H 1.09000 * 109.46700 * 60.94673 * 20 19 18 35 35 H 1.08995 * 109.46442 * 180.92778 * 20 19 18 36 36 H 1.08999 * 109.54565 * 184.76650 * 22 21 20 37 37 H 1.09004 * 109.43200 * 64.42769 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8074 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.3280 -1.2458 -2.3152 19 6 6.6588 -0.7122 -2.8603 20 6 7.3148 0.1699 -1.7941 21 8 6.4399 1.2510 -1.4643 22 6 5.1956 0.8406 -0.8994 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1609 3.4844 27 1 0.7375 -2.1444 -1.9993 28 1 2.4628 -2.5819 -1.9863 29 1 1.5295 -2.5969 -0.4708 30 1 5.5180 -1.9442 -1.5003 31 1 4.7796 -1.7498 -3.1111 32 1 7.3170 -1.5477 -3.0982 33 1 6.4754 -0.1245 -3.7599 34 1 7.5106 -0.4241 -0.9013 35 1 8.2540 0.5672 -2.1790 36 1 4.5556 1.7111 -0.7554 37 1 5.3756 0.3536 0.0590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463684187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:54 Heat of formation + Delta-G solvation = -136.801413 kcal Electronic energy + Delta-G solvation = -21703.464184 eV Core-core repulsion = 18414.098633 eV Total energy + Delta-G solvation = -3289.365550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.20458 -38.47417 -37.90038 -36.96943 -35.55996 -34.50936 -33.03621 -30.93727 -27.27447 -27.05421 -26.63032 -26.25591 -22.62532 -22.21220 -20.01683 -18.97063 -18.56162 -18.30275 -17.75171 -16.94442 -16.57283 -16.35593 -15.93820 -15.74847 -15.19665 -15.04772 -14.62152 -14.48666 -14.14573 -13.74210 -13.47660 -13.31149 -13.22198 -13.18434 -12.99319 -12.75230 -12.67633 -12.31839 -12.21820 -12.19588 -12.12401 -11.92730 -11.87531 -11.22940 -10.88931 -10.48529 -10.19471 -9.67951 -8.08051 -6.23502 -0.43514 1.48039 1.48707 1.56038 1.89334 2.44521 2.49492 2.84398 3.20330 3.27334 3.68783 3.92169 4.03248 4.10676 4.26479 4.35317 4.48495 4.60048 4.68301 4.75207 4.78548 4.86676 4.95959 4.97756 5.05258 5.15162 5.20567 5.25176 5.39709 5.61276 5.72335 5.84782 6.08904 6.10039 6.28644 6.85551 7.46422 8.96321 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.007810 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.077182 B = 3584.348532 C = 4322.871907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.272 3.728 3 H 0.025 0.975 4 C -0.529 4.529 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.291 1.291 11 H -0.270 1.270 12 N -0.995 5.995 13 C 0.100 3.900 14 S 2.796 3.204 15 O -1.000 7.000 16 O -1.015 7.015 17 N -1.025 6.025 18 C 0.103 3.897 19 C -0.161 4.161 20 C 0.050 3.950 21 O -0.405 6.405 22 C 0.296 3.704 23 H 0.017 0.983 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -6.998 -6.677 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.569 4.569 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.195 1.195 12 N -0.837 5.837 13 C -0.045 4.045 14 S 2.806 3.194 15 O -0.984 6.984 16 O -0.999 6.999 17 N -0.873 5.873 18 C -0.021 4.021 19 C -0.200 4.200 20 C -0.026 4.026 21 O -0.320 6.320 22 C 0.133 3.867 23 H 0.036 0.964 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.116 0.884 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.461 -6.167 -7.328 14.184 hybrid contribution -0.127 -0.434 1.275 1.353 sum 10.335 -6.601 -6.053 13.676 Atomic orbital electron populations 1.21944 0.97905 1.00088 0.99908 1.18433 0.91986 0.91430 0.81418 0.95720 1.21566 1.31719 1.13155 0.90432 0.91116 1.25687 0.95169 0.95566 1.01825 1.70010 1.37257 1.23961 1.24415 0.85606 0.78819 0.78648 0.78483 1.19455 1.21714 1.19531 1.57673 1.64693 1.22637 1.38686 1.21397 1.00451 0.80330 1.02322 1.01282 0.72799 0.72431 0.72887 1.93503 1.86354 1.76257 1.42299 1.93521 1.84591 1.34599 1.87175 1.58776 1.30224 1.36640 1.61623 1.21823 0.93142 0.87037 1.00095 1.22495 0.96737 1.01730 0.99048 1.22854 0.92930 0.88772 0.98009 1.87926 1.27290 1.34229 1.82591 1.22399 0.83332 0.91686 0.89289 0.96394 0.91120 0.93687 0.92723 0.93055 0.90578 0.90313 0.89197 0.88709 0.86148 0.91773 0.91415 0.86543 0.88374 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 8.97 71.98 0.65 -5.97 16 2 C 0.27 13.14 2.62 44.25 0.12 13.25 16 3 H 0.03 1.37 6.91 -2.39 -0.02 1.35 16 4 C -0.53 -26.11 7.99 25.60 0.20 -25.90 16 5 H 0.07 3.30 7.33 -2.91 -0.02 3.28 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -50.15 11.32 21.45 0.24 -49.91 16 8 Si 0.96 40.27 29.54 68.60 2.03 42.29 16 9 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 N -0.99 -40.32 3.12 -520.44 -1.62 -41.94 16 13 C 0.10 3.33 9.29 127.77 1.19 4.52 16 14 S 2.80 111.03 6.11 -56.49 -0.35 110.69 16 15 O -1.00 -39.91 15.82 -128.00 -2.03 -41.94 16 16 O -1.01 -48.11 15.30 -128.00 -1.96 -50.07 16 17 N -1.02 -33.52 3.46 -629.25 -2.18 -35.70 16 18 C 0.10 2.48 6.59 86.39 0.57 3.05 16 19 C -0.16 -3.10 6.32 30.78 0.19 -2.90 16 20 C 0.05 1.03 6.80 72.03 0.49 1.52 16 21 O -0.40 -12.23 10.84 -148.98 -1.62 -13.85 16 22 C 0.30 9.84 7.46 127.67 0.95 10.79 16 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 25 H 0.04 1.97 7.67 -2.38 -0.02 1.96 16 26 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 27 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.08 2.08 7.79 -2.39 -0.02 2.06 16 29 H 0.08 2.64 7.02 -2.39 -0.02 2.62 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.25 6.94 -2.39 -0.02 2.23 16 32 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 3.73 6.92 -2.39 -0.02 3.71 16 37 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -64.99 308.26 -1.62 -66.60 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.06 Total: 14.13 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.81 Total: -0.30 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -3.56 Total: -127.55 kcal Atomic # 8 Polarization: -100.26 SS G_CDS: -5.60 Total: -105.86 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 111.03 SS G_CDS: -0.35 Total: 110.69 kcal Total: -64.99 -1.62 -66.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463684187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.198 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds