Wall clock time and date at job start Tue Mar 31 2020 01:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46731 * 2 1 4 4 C 1.50696 * 109.46829 * 240.00039 * 2 1 3 5 5 H 1.07998 * 120.00461 * 239.99654 * 4 2 1 6 6 C 1.37881 * 120.00099 * 60.00068 * 4 2 1 7 7 N 1.31521 * 119.99892 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00042 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46730 * 90.00557 * 8 6 4 10 10 H 1.48501 * 109.47025 * 210.00265 * 8 6 4 11 11 H 1.48497 * 109.47357 * 330.00392 * 8 6 4 12 12 O 1.45203 * 109.47162 * 120.00186 * 2 1 3 13 13 C 1.34710 * 116.99823 * 269.99943 * 12 2 1 14 14 O 1.21489 * 120.00410 * 0.02562 * 13 12 2 15 15 C 1.47644 * 120.00100 * 179.97438 * 13 12 2 16 16 C 1.41218 * 126.18292 * 179.97438 * 15 13 12 17 17 C 1.36828 * 104.89867 * 180.02562 * 16 15 13 18 18 N 1.37837 * 107.46071 * 0.02598 * 17 16 15 19 19 N 1.28079 * 109.01467 * 359.96427 * 18 17 16 20 20 C 1.46772 * 122.99976 * 179.97438 * 18 17 16 21 21 C 1.52975 * 109.78286 * 338.47087 * 20 18 17 22 22 C 1.53283 * 110.60232 * 53.55088 * 21 20 18 23 23 C 1.46829 * 130.32462 * 180.02562 * 17 16 15 24 24 O 1.21339 * 122.52395 * 349.78571 * 23 17 16 25 25 H 1.09004 * 109.47044 * 59.99800 * 1 2 3 26 26 H 1.08994 * 109.47426 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47198 * 299.99851 * 1 2 3 28 28 H 0.97004 * 119.99753 * 179.97438 * 7 6 4 29 29 H 1.08003 * 127.54403 * 0.05876 * 16 15 13 30 30 H 1.09004 * 109.41657 * 218.37719 * 20 18 17 31 31 H 1.08999 * 109.37182 * 98.53553 * 20 18 17 32 32 H 1.09000 * 109.24872 * 293.26413 * 21 20 18 33 33 H 1.08995 * 109.21688 * 173.82273 * 21 20 18 34 34 H 1.09003 * 109.77492 * 176.56583 * 22 21 20 35 35 H 1.08995 * 109.78197 * 55.76061 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6306 -1.7567 -3.7121 12 8 2.0140 -0.6845 1.1856 13 6 2.2179 0.0666 2.2850 14 8 1.9969 1.2609 2.2544 15 6 2.7088 -0.5616 3.5277 16 6 2.9669 0.0977 4.7496 17 6 3.3997 -0.8865 5.5958 18 7 3.3932 -2.0707 4.8905 19 7 2.9871 -1.8435 3.6973 20 6 3.8000 -3.3530 5.4775 21 6 4.6900 -3.1051 6.6967 22 6 3.9977 -2.1621 7.6872 23 6 3.8173 -0.8150 7.0017 24 8 3.9991 0.2386 7.5755 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 0.7094 1.1620 -3.4844 29 1 2.8480 1.1487 4.9683 30 1 4.3524 -3.9315 4.7371 31 1 2.9132 -3.9082 5.7831 32 1 5.6291 -2.6577 6.3711 33 1 4.8964 -4.0552 7.1894 34 1 4.6161 -2.0431 8.5769 35 1 3.0251 -2.5683 7.9649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524672408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:19 Heat of formation + Delta-G solvation = -70.845276 kcal Electronic energy + Delta-G solvation = -20994.970404 eV Core-core repulsion = 17573.020975 eV Total energy + Delta-G solvation = -3421.949429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.95501 -41.15627 -40.21039 -37.69363 -36.90213 -35.35080 -33.16407 -32.09419 -31.33174 -29.28986 -27.48495 -26.13576 -24.03062 -23.67315 -22.92578 -21.53345 -20.13566 -18.89697 -18.46876 -18.29069 -17.61629 -17.28507 -16.72478 -16.50992 -16.33540 -16.00562 -15.77855 -15.34003 -14.93993 -14.49242 -14.31578 -13.95511 -13.74043 -13.28063 -13.23408 -13.03214 -12.81298 -12.46533 -12.42073 -12.27486 -12.17507 -12.10432 -11.79369 -11.63229 -11.04306 -11.02768 -10.61753 -10.57368 -10.37397 -8.29615 -6.46825 -0.27364 0.17230 1.09978 1.41679 1.44635 1.51957 1.55705 1.86758 1.97422 2.39070 2.74865 2.94788 3.00939 3.52037 3.65299 3.73567 4.06434 4.10118 4.18540 4.24431 4.49363 4.52206 4.54514 4.76404 4.77652 4.87420 4.90123 4.93850 5.09542 5.11190 5.42424 5.44827 5.57738 5.82732 6.00155 6.17340 6.47124 6.59617 6.87349 7.24062 8.78614 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032861 B = 0.003748 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.870503 B = 7469.507406 C = 8023.048206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.011 0.989 4 C -0.550 4.550 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.987 3.013 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.266 1.266 12 O -0.347 6.347 13 C 0.538 3.462 14 O -0.539 6.539 15 C -0.041 4.041 16 C -0.107 4.107 17 C -0.086 4.086 18 N -0.236 5.236 19 N -0.210 5.210 20 C 0.095 3.905 21 C -0.121 4.121 22 C -0.153 4.153 23 C 0.434 3.566 24 O -0.470 6.470 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.272 0.728 29 H 0.173 0.827 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 -13.336 21.552 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.809 3.191 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.191 1.191 12 O -0.262 6.262 13 C 0.382 3.618 14 O -0.429 6.429 15 C -0.192 4.192 16 C -0.134 4.134 17 C -0.208 4.208 18 N -0.033 5.033 19 N -0.053 5.053 20 C -0.021 4.021 21 C -0.159 4.159 22 C -0.190 4.190 23 C 0.310 3.690 24 O -0.343 6.343 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.190 0.810 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.096 0.904 33 H 0.176 0.824 34 H 0.147 0.853 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.171 -13.422 21.158 26.062 hybrid contribution -0.185 1.273 -0.971 1.612 sum 6.986 -12.149 20.187 24.575 Atomic orbital electron populations 1.21997 0.96433 1.00525 1.01014 1.20511 0.92323 0.92289 0.78721 0.97071 1.21262 1.33644 1.13985 0.89807 0.91550 1.25860 0.94639 0.95655 1.02107 1.70020 1.36517 1.23541 1.25351 0.85130 0.78987 0.78118 0.76841 1.18980 1.20079 1.19055 1.86609 1.75800 1.42890 1.20934 1.20079 0.73840 0.84366 0.83482 1.90770 1.50566 1.16724 1.84805 1.20732 1.13550 0.90950 0.94000 1.22044 1.00308 1.01199 0.89887 1.22689 1.12885 0.86884 0.98377 1.47209 1.41135 1.09937 1.05033 1.73444 1.11795 1.17668 1.02422 1.23032 1.03208 0.78400 0.97492 1.22001 0.97618 1.03728 0.92552 1.22586 1.06319 0.89844 1.00278 1.22606 0.70467 0.92884 0.83027 1.90622 1.40220 1.36094 1.67369 0.89616 0.93490 0.95745 0.91849 0.80987 0.85538 0.84802 0.90435 0.82354 0.85255 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.70 9.33 71.98 0.67 -7.03 16 2 C 0.21 12.54 2.56 29.85 0.08 12.61 16 3 H 0.01 0.74 7.16 -2.39 -0.02 0.72 16 4 C -0.55 -32.57 8.90 25.60 0.23 -32.34 16 5 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 8 Si 0.99 43.78 29.54 68.60 2.03 45.81 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 12 O -0.35 -18.66 9.87 -56.20 -0.55 -19.21 16 13 C 0.54 26.46 7.94 70.31 0.56 27.02 16 14 O -0.54 -28.82 16.17 19.87 0.32 -28.50 16 15 C -0.04 -1.60 7.13 42.29 0.30 -1.30 16 16 C -0.11 -3.53 10.84 22.67 0.25 -3.28 16 17 C -0.09 -2.14 6.73 40.12 0.27 -1.87 16 18 N -0.24 -5.32 3.81 -334.79 -1.28 -6.59 16 19 N -0.21 -7.04 12.05 -48.18 -0.58 -7.62 16 20 C 0.09 0.76 7.16 86.32 0.62 1.38 16 21 C -0.12 -0.22 5.85 30.68 0.18 -0.05 16 22 C -0.15 -0.79 6.23 30.43 0.19 -0.60 16 23 C 0.43 8.06 7.10 28.43 0.20 8.26 16 24 O -0.47 -12.23 17.97 -3.21 -0.06 -12.28 16 25 H 0.09 4.89 6.07 -2.39 -0.01 4.88 16 26 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.17 5.54 8.06 -2.91 -0.02 5.52 16 30 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.16 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -81.94 309.68 5.23 -76.71 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.12 Total: 1.01 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 3.99 Total: 4.22 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.61 Total: -67.76 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -0.29 Total: -60.00 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -81.94 5.23 -76.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524672408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.864 kcal (2) G-P(sol) polarization free energy of solvation -81.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds