Wall clock time and date at job start Tue Mar 31 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46837 * 2 1 4 4 C 1.50702 * 109.47261 * 119.99852 * 2 1 3 5 5 H 1.07995 * 119.99773 * 120.00145 * 4 2 1 6 6 C 1.37878 * 119.99960 * 300.00029 * 4 2 1 7 7 N 1.31524 * 119.99936 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00101 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46886 * 90.00178 * 8 6 4 10 10 H 1.48500 * 109.47189 * 210.00033 * 8 6 4 11 11 H 1.48498 * 109.47199 * 330.00463 * 8 6 4 12 12 O 1.45199 * 109.47164 * 240.00345 * 2 1 3 13 13 C 1.34713 * 117.00780 * 90.00109 * 12 2 1 14 14 O 1.21489 * 119.99435 * 359.97438 * 13 12 2 15 15 C 1.47641 * 120.00278 * 180.02562 * 13 12 2 16 16 C 1.41225 * 126.17378 * 179.97438 * 15 13 12 17 17 C 1.36833 * 104.89342 * 180.02562 * 16 15 13 18 18 N 1.37840 * 107.46193 * 0.02562 * 17 16 15 19 19 N 1.28085 * 109.01474 * 359.96888 * 18 17 16 20 20 C 1.46769 * 123.00101 * 179.97438 * 18 17 16 21 21 C 1.52968 * 109.78434 * 338.48987 * 20 18 17 22 22 C 1.53290 * 110.59965 * 53.54913 * 21 20 18 23 23 C 1.46826 * 130.32883 * 180.02562 * 17 16 15 24 24 O 1.21342 * 122.51854 * 349.50981 * 23 17 16 25 25 H 1.08997 * 109.47556 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47197 * 300.00495 * 1 2 3 27 27 H 1.09009 * 109.46893 * 60.00018 * 1 2 3 28 28 H 0.96995 * 120.00113 * 180.02562 * 7 6 4 29 29 H 1.07993 * 127.55445 * 359.76848 * 16 15 13 30 30 H 1.09000 * 109.41617 * 98.58588 * 20 18 17 31 31 H 1.09005 * 109.41540 * 218.45422 * 20 18 17 32 32 H 1.08995 * 109.25316 * 173.84165 * 21 20 18 33 33 H 1.09005 * 109.24836 * 293.30495 * 21 20 18 34 34 H 1.09003 * 109.77551 * 55.74908 * 22 21 20 35 35 H 1.08997 * 109.77673 * 176.55871 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4123 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7120 12 8 2.0139 -0.6844 -1.1856 13 6 2.2179 0.0667 -2.2851 14 8 1.9969 1.2609 -2.2544 15 6 2.7088 -0.5615 -3.5277 16 6 2.9659 0.0978 -4.7499 17 6 3.3981 -0.8866 -5.5964 18 7 3.3909 -2.0710 -4.8913 19 7 2.9864 -1.8436 -3.6975 20 6 3.7958 -3.3536 -5.4789 21 6 3.6890 -3.2814 -7.0032 22 6 4.4713 -2.0784 -7.5423 23 6 3.8155 -0.8152 -7.0023 24 8 3.6513 0.1765 -7.6819 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 0.7086 1.1614 3.4843 29 1 2.8438 1.1480 -4.9696 30 1 4.8260 -3.5719 -5.1977 31 1 3.1435 -4.1442 -5.1078 32 1 4.0939 -4.1964 -7.4355 33 1 2.6408 -3.1836 -7.2858 34 1 5.5066 -2.1306 -7.2051 35 1 4.4371 -2.0745 -8.6317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524672409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:22 Heat of formation + Delta-G solvation = -47.048206 kcal Electronic energy + Delta-G solvation = -20993.679037 eV Core-core repulsion = 17572.761526 eV Total energy + Delta-G solvation = -3420.917510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.82778 -39.47323 -39.08603 -36.32200 -35.61025 -33.21846 -32.13505 -30.77642 -29.47983 -28.50342 -25.31049 -24.76514 -23.11276 -22.74297 -21.18810 -20.02697 -18.90687 -17.61484 -17.02681 -16.56597 -16.43690 -15.77279 -15.42733 -15.20156 -14.93008 -14.80637 -14.50472 -14.38008 -13.66231 -13.17623 -12.94253 -12.74257 -12.19867 -11.95980 -11.89145 -11.79183 -11.21172 -11.06428 -11.00126 -10.81622 -10.33369 -10.25962 -10.20596 -9.88825 -9.52078 -9.41051 -9.23165 -8.87012 -8.45774 -6.14927 -4.21323 0.69854 1.67340 2.02940 2.48046 3.27010 3.29042 3.33599 3.38796 3.63227 3.71252 3.78070 4.10097 4.22141 4.35646 4.47514 4.64854 4.84290 4.93824 5.02851 5.14027 5.18150 5.33514 5.42269 5.43657 5.74627 6.19691 6.39119 6.67395 6.93543 6.94545 7.00155 7.15632 7.60877 7.71027 7.75487 7.95382 8.16749 8.64655 8.91302 9.43580 10.92732 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.003737 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.358956 B = 7490.917758 C = 8029.672375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.049 0.951 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.338 6.338 13 C 0.542 3.458 14 O -0.508 6.508 15 C -0.004 4.004 16 C -0.084 4.084 17 C -0.097 4.097 18 N -0.265 5.265 19 N -0.192 5.192 20 C 0.117 3.883 21 C -0.131 4.131 22 C -0.167 4.167 23 C 0.432 3.568 24 O -0.435 6.435 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.017 0.983 28 H 0.266 0.734 29 H 0.176 0.824 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -9.964 -19.597 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.253 6.253 13 C 0.383 3.617 14 O -0.396 6.396 15 C -0.159 4.159 16 C -0.111 4.111 17 C -0.218 4.218 18 N -0.061 5.061 19 N -0.033 5.033 20 C -0.002 4.002 21 C -0.169 4.169 22 C -0.204 4.204 23 C 0.307 3.693 24 O -0.306 6.306 25 H 0.057 0.943 26 H 0.119 0.881 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.194 0.806 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.468 -10.076 -19.243 22.664 hybrid contribution 0.215 0.349 0.613 0.738 sum 6.683 -9.727 -18.630 22.053 Atomic orbital electron populations 1.22171 0.97400 1.00226 1.01495 1.20735 0.91536 0.94024 0.77550 0.93334 1.21025 1.32402 1.13496 0.88767 0.91209 1.24884 0.94940 0.95135 0.99024 1.69903 1.36077 1.22631 1.24158 0.86260 0.78512 0.79909 0.81370 1.20414 1.20968 1.19589 1.86627 1.75267 1.42750 1.20653 1.19429 0.74721 0.84509 0.83015 1.90813 1.49090 1.15473 1.84228 1.21282 1.10083 0.89470 0.95092 1.21959 0.98328 1.00521 0.90333 1.22187 1.14870 0.87668 0.97042 1.46487 1.44723 1.08219 1.06633 1.73547 1.10850 1.18808 1.00087 1.22191 1.03221 0.81417 0.93353 1.21889 1.02747 0.99647 0.92613 1.22481 1.01447 0.92892 1.03607 1.21731 0.74944 0.88544 0.84121 1.90624 1.45492 1.34175 1.60311 0.94348 0.88124 0.96408 0.92407 0.80644 0.87943 0.86942 0.87223 0.89835 0.87241 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.33 37.15 0.35 -3.70 16 2 C 0.21 5.94 2.56 -27.89 -0.07 5.86 16 3 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 4 C -0.52 -14.92 8.90 -34.44 -0.31 -15.22 16 5 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 O -0.34 -8.61 9.87 -40.53 -0.40 -9.01 16 13 C 0.54 12.47 7.94 34.57 0.27 12.75 16 14 O -0.51 -12.61 16.17 -19.26 -0.31 -12.92 16 15 C 0.00 -0.08 7.13 -82.71 -0.59 -0.67 16 16 C -0.08 -1.32 10.84 -38.96 -0.42 -1.75 16 17 C -0.10 -1.25 6.73 -82.20 -0.55 -1.81 16 18 N -0.26 -3.24 3.81 -57.17 -0.22 -3.45 16 19 N -0.19 -3.23 12.05 33.42 0.40 -2.82 16 20 C 0.12 0.73 7.16 -3.91 -0.03 0.70 16 21 C -0.13 -0.48 5.85 -26.60 -0.16 -0.64 16 22 C -0.17 -0.86 6.23 -26.98 -0.17 -1.02 16 23 C 0.43 4.51 7.10 -30.08 -0.21 4.29 16 24 O -0.44 -5.88 17.97 5.50 0.10 -5.78 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.77 6.07 -51.93 -0.32 2.45 16 27 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -34.95 309.67 -6.17 -41.12 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.04 Total: -3.60 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.98 Total: 0.44 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.81 Total: -31.24 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.61 Total: -27.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.95 -6.17 -41.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524672409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.925 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds