Wall clock time and date at job start Tue Mar 31 2020 01:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.46837 * 2 1 4 4 C 1.50702 * 109.47261 * 119.99852 * 2 1 3 5 5 H 1.07995 * 119.99773 * 120.00145 * 4 2 1 6 6 C 1.37878 * 119.99960 * 300.00029 * 4 2 1 7 7 N 1.31524 * 119.99936 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00101 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46886 * 90.00178 * 8 6 4 10 10 H 1.48500 * 109.47189 * 210.00033 * 8 6 4 11 11 H 1.48498 * 109.47199 * 330.00463 * 8 6 4 12 12 O 1.45199 * 109.47164 * 240.00345 * 2 1 3 13 13 C 1.34713 * 117.00780 * 90.00109 * 12 2 1 14 14 O 1.21489 * 119.99435 * 359.97438 * 13 12 2 15 15 C 1.47641 * 120.00278 * 180.02562 * 13 12 2 16 16 C 1.41225 * 126.17378 * 179.97438 * 15 13 12 17 17 C 1.36833 * 104.89342 * 180.02562 * 16 15 13 18 18 N 1.37840 * 107.46193 * 0.02562 * 17 16 15 19 19 N 1.28085 * 109.01474 * 359.96888 * 18 17 16 20 20 C 1.46769 * 123.00101 * 179.97438 * 18 17 16 21 21 C 1.52968 * 109.78434 * 338.48987 * 20 18 17 22 22 C 1.53290 * 110.59965 * 53.54913 * 21 20 18 23 23 C 1.46826 * 130.32883 * 180.02562 * 17 16 15 24 24 O 1.21342 * 122.51854 * 349.50981 * 23 17 16 25 25 H 1.08997 * 109.47556 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47197 * 300.00495 * 1 2 3 27 27 H 1.09009 * 109.46893 * 60.00018 * 1 2 3 28 28 H 0.96995 * 120.00113 * 180.02562 * 7 6 4 29 29 H 1.07993 * 127.55445 * 359.76848 * 16 15 13 30 30 H 1.09000 * 109.41617 * 98.58588 * 20 18 17 31 31 H 1.09005 * 109.41540 * 218.45422 * 20 18 17 32 32 H 1.08995 * 109.25316 * 173.84165 * 21 20 18 33 33 H 1.09005 * 109.24836 * 293.30495 * 21 20 18 34 34 H 1.09003 * 109.77551 * 55.74908 * 22 21 20 35 35 H 1.08997 * 109.77673 * 176.55871 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4123 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7120 12 8 2.0139 -0.6844 -1.1856 13 6 2.2179 0.0667 -2.2851 14 8 1.9969 1.2609 -2.2544 15 6 2.7088 -0.5615 -3.5277 16 6 2.9659 0.0978 -4.7499 17 6 3.3981 -0.8866 -5.5964 18 7 3.3909 -2.0710 -4.8913 19 7 2.9864 -1.8436 -3.6975 20 6 3.7958 -3.3536 -5.4789 21 6 3.6890 -3.2814 -7.0032 22 6 4.4713 -2.0784 -7.5423 23 6 3.8155 -0.8152 -7.0023 24 8 3.6513 0.1765 -7.6819 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 0.7086 1.1614 3.4843 29 1 2.8438 1.1480 -4.9696 30 1 4.8260 -3.5719 -5.1977 31 1 3.1435 -4.1442 -5.1078 32 1 4.0939 -4.1964 -7.4355 33 1 2.6408 -3.1836 -7.2858 34 1 5.5066 -2.1306 -7.2051 35 1 4.4371 -2.0745 -8.6317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524672409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:21 Heat of formation + Delta-G solvation = -70.825321 kcal Electronic energy + Delta-G solvation = -20994.710090 eV Core-core repulsion = 17572.761526 eV Total energy + Delta-G solvation = -3421.948564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.95445 -41.15659 -40.21026 -37.69372 -36.90215 -35.34994 -33.16376 -32.09453 -31.33215 -29.29047 -27.48585 -26.13572 -24.03160 -23.67322 -22.92552 -21.53177 -20.14049 -18.90571 -18.43786 -18.27942 -17.68959 -17.25981 -16.70638 -16.47431 -16.33977 -16.04566 -15.77214 -15.34288 -14.93960 -14.48398 -14.29060 -14.02160 -13.69560 -13.30386 -13.21695 -13.02183 -12.84592 -12.46416 -12.40240 -12.27698 -12.16301 -12.10378 -11.79370 -11.64143 -11.04320 -11.02135 -10.62060 -10.57372 -10.37475 -8.29476 -6.46730 -0.27412 0.17194 1.09974 1.41836 1.44609 1.51742 1.56232 1.86747 1.97337 2.39256 2.74825 2.94766 3.01105 3.51996 3.65268 3.73564 4.06411 4.10065 4.18623 4.24399 4.49183 4.52154 4.54397 4.76248 4.77600 4.87507 4.90090 4.93758 5.09424 5.11085 5.42404 5.44898 5.57552 5.82725 6.00148 6.17245 6.47111 6.59722 6.87353 7.24162 8.78799 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.003737 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.358956 B = 7490.917758 C = 8029.672375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.012 0.988 4 C -0.549 4.549 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.987 3.013 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.262 1.262 12 O -0.347 6.347 13 C 0.538 3.462 14 O -0.539 6.539 15 C -0.041 4.041 16 C -0.107 4.107 17 C -0.086 4.086 18 N -0.236 5.236 19 N -0.209 5.209 20 C 0.094 3.906 21 C -0.121 4.121 22 C -0.154 4.154 23 C 0.434 3.566 24 O -0.470 6.470 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.023 0.977 28 H 0.272 0.728 29 H 0.173 0.827 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 -13.141 -21.220 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.809 3.191 9 H -0.196 1.196 10 H -0.198 1.198 11 H -0.187 1.187 12 O -0.262 6.262 13 C 0.382 3.618 14 O -0.429 6.429 15 C -0.192 4.192 16 C -0.134 4.134 17 C -0.208 4.208 18 N -0.033 5.033 19 N -0.053 5.053 20 C -0.021 4.021 21 C -0.159 4.159 22 C -0.191 4.191 23 C 0.310 3.690 24 O -0.343 6.343 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.190 0.810 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.176 0.824 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.070 -13.267 -20.885 26.026 hybrid contribution -0.231 1.276 0.952 1.609 sum 7.839 -11.991 -19.934 24.547 Atomic orbital electron populations 1.21998 0.96482 1.00509 1.00999 1.20511 0.92296 0.92303 0.78730 0.97053 1.21263 1.33617 1.14003 0.89787 0.91512 1.25861 0.94609 0.95688 1.02118 1.70018 1.36422 1.23655 1.25359 0.85129 0.78172 0.78879 0.76893 1.19648 1.19791 1.18659 1.86608 1.75797 1.42900 1.20931 1.20080 0.73850 0.84362 0.83473 1.90770 1.50571 1.16731 1.84792 1.20730 1.13502 0.90950 0.94040 1.22045 0.99880 1.01385 0.90127 1.22690 1.12874 0.87002 0.98262 1.47208 1.41135 1.09979 1.04997 1.73444 1.11736 1.17675 1.02467 1.23027 1.05175 0.78837 0.95108 1.22002 1.02697 1.00917 0.90243 1.22591 1.02100 0.89547 1.04831 1.22603 0.73988 0.90066 0.82318 1.90623 1.46928 1.36197 1.60547 0.93507 0.89595 0.95799 0.91849 0.80986 0.84906 0.85466 0.82360 0.90356 0.84637 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.73 9.33 71.98 0.67 -7.06 16 2 C 0.21 12.54 2.56 29.85 0.08 12.61 16 3 H 0.01 0.75 7.16 -2.38 -0.02 0.73 16 4 C -0.55 -32.51 8.90 25.60 0.23 -32.29 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 8 Si 0.99 43.72 29.54 68.60 2.03 45.75 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 12 O -0.35 -18.66 9.87 -56.22 -0.55 -19.21 16 13 C 0.54 26.45 7.94 70.31 0.56 27.01 16 14 O -0.54 -28.82 16.17 19.87 0.32 -28.50 16 15 C -0.04 -1.60 7.13 42.30 0.30 -1.29 16 16 C -0.11 -3.53 10.84 22.67 0.25 -3.28 16 17 C -0.09 -2.14 6.73 40.12 0.27 -1.87 16 18 N -0.24 -5.32 3.81 -334.80 -1.28 -6.59 16 19 N -0.21 -7.03 12.05 -48.18 -0.58 -7.61 16 20 C 0.09 0.76 7.16 86.32 0.62 1.38 16 21 C -0.12 -0.21 5.85 30.68 0.18 -0.03 16 22 C -0.15 -0.80 6.23 30.44 0.19 -0.61 16 23 C 0.43 8.06 7.10 28.43 0.20 8.27 16 24 O -0.47 -12.21 17.97 -3.22 -0.06 -12.27 16 25 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.09 4.91 6.07 -2.38 -0.01 4.90 16 27 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.17 5.54 8.06 -2.91 -0.02 5.52 16 30 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.16 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -81.86 309.67 5.23 -76.63 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.12 Total: 1.10 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 3.99 Total: 4.24 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.61 Total: -67.76 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -0.29 Total: -59.98 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -81.86 5.23 -76.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524672409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.809 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds