Wall clock time and date at job start Mon Mar 30 2020 23:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47238 * 2 1 4 4 C 1.50692 * 109.47323 * 120.00638 * 2 1 3 5 5 O 1.20825 * 120.00078 * 123.79961 * 4 2 1 6 6 O 1.34229 * 120.00229 * 303.80253 * 4 2 1 7 7 C 1.45193 * 117.00451 * 175.03768 * 6 4 2 8 8 C 1.53007 * 109.47354 * 184.74161 * 7 6 4 9 9 C 1.50699 * 113.56458 * 284.55433 * 8 7 6 10 10 H 1.08000 * 120.00401 * 131.15401 * 9 8 7 11 11 C 1.37885 * 119.99711 * 311.15627 * 9 8 7 12 12 N 1.31515 * 119.99854 * 351.82695 * 11 9 8 13 13 Si 1.86793 * 119.99779 * 171.82707 * 11 9 8 14 14 H 1.48504 * 109.47432 * 89.99811 * 13 11 9 15 15 H 1.48495 * 109.47376 * 209.99815 * 13 11 9 16 16 H 1.48500 * 109.47585 * 330.00167 * 13 11 9 17 17 C 1.53365 * 114.56650 * 58.82560 * 8 7 6 18 18 O 1.43349 * 88.44629 * 86.60961 * 17 8 7 19 19 C 1.43351 * 88.32127 * 28.15078 * 18 17 8 20 20 C 1.53010 * 109.46879 * 240.00403 * 2 1 3 21 21 F 1.39899 * 109.46976 * 59.99975 * 20 2 1 22 22 F 1.39898 * 109.47248 * 179.97438 * 20 2 1 23 23 H 1.09001 * 109.46878 * 304.55783 * 1 2 3 24 24 H 1.08999 * 109.47237 * 64.55583 * 1 2 3 25 25 H 1.09004 * 109.47317 * 184.55606 * 1 2 3 26 26 H 1.08995 * 109.46847 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47104 * 300.00316 * 3 2 1 28 28 H 1.09004 * 109.46628 * 60.00683 * 3 2 1 29 29 H 1.08998 * 109.47669 * 64.74158 * 7 6 4 30 30 H 1.09004 * 109.46959 * 304.73991 * 7 6 4 31 31 H 0.97002 * 119.99567 * 185.02212 * 12 11 9 32 32 H 1.09003 * 113.39526 * 331.71374 * 17 8 7 33 33 H 1.08995 * 113.39261 * 201.50796 * 17 8 7 34 34 H 1.08996 * 113.39019 * 86.74856 * 19 18 17 35 35 H 1.08997 * 113.39147 * 216.90337 * 19 18 17 36 36 H 1.08996 * 109.46954 * 300.00168 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7825 -1.6513 1.1207 6 8 1.6463 -0.2983 2.4480 7 6 2.0792 -1.0954 3.5818 8 6 1.4502 -0.5440 4.8629 9 6 2.0932 0.7287 5.3504 10 1 1.4794 1.5768 5.6156 11 6 3.4655 0.8105 5.4578 12 7 4.2033 -0.2653 5.2910 13 14 4.2763 2.4493 5.8401 14 1 4.4003 2.6090 7.3113 15 1 5.6260 2.4898 5.2223 16 1 3.4472 3.5520 5.2908 17 6 -0.0834 -0.5241 4.8629 18 8 -0.0621 -1.8745 5.3432 19 6 1.2035 -1.5925 5.9546 20 6 2.0399 -0.7212 -1.2494 21 9 1.5735 -0.0616 -2.3916 22 9 3.4389 -0.7208 -1.2498 23 1 -0.3633 0.5829 0.8464 24 1 -0.3634 0.4415 -0.9280 25 1 -0.3634 -1.0244 0.0816 26 1 3.1299 1.4424 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1653 -1.0525 3.6627 30 1 1.7661 -2.1298 3.4393 31 1 5.1613 -0.2239 5.4380 32 1 -0.5149 -0.4259 3.8667 33 1 -0.5070 0.1825 5.5765 34 1 1.1158 -1.1649 6.9534 35 1 1.8992 -2.4307 5.9158 36 1 1.6765 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526116932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:38 Heat of formation + Delta-G solvation = -205.734371 kcal Electronic energy + Delta-G solvation = -23208.263292 eV Core-core repulsion = 19329.775447 eV Total energy + Delta-G solvation = -3878.487845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.97523 -46.90829 -40.25987 -39.50773 -36.00301 -35.26570 -33.18853 -29.88082 -27.51702 -26.37619 -25.89610 -25.18803 -24.51227 -22.86318 -19.66898 -18.70947 -17.75263 -17.23694 -17.17435 -16.50601 -16.29555 -15.71731 -15.30307 -14.91661 -14.72867 -14.31787 -14.02895 -13.81044 -13.51075 -13.25067 -13.00609 -12.94983 -12.29208 -12.19523 -12.18010 -12.00970 -11.83267 -11.54785 -11.32065 -11.09229 -11.05772 -10.70204 -10.61333 -10.51842 -9.87693 -9.78483 -9.32248 -9.05011 -8.71953 -8.52625 -6.22999 -4.31969 2.60720 2.96925 3.18698 3.27934 3.30357 3.69585 4.14093 4.25123 4.41001 4.58677 4.95162 5.00141 5.02923 5.11521 5.17953 5.52673 5.59922 5.71156 5.73528 5.91344 5.97416 6.07981 6.17759 6.24993 6.29541 6.40718 6.69685 6.70510 7.03703 7.05665 7.26207 7.35790 7.74981 8.06950 8.28792 8.66161 9.33962 10.80339 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.006386 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.940293 B = 4383.216151 C = 5142.943156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.468 3.532 5 O -0.508 6.508 6 O -0.333 6.333 7 C 0.093 3.907 8 C 0.027 3.973 9 C -0.510 4.510 10 H 0.067 0.933 11 C 0.070 3.930 12 N -0.886 5.886 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.271 1.271 17 C 0.031 3.969 18 O -0.399 6.399 19 C 0.042 3.958 20 C 0.284 3.716 21 F -0.201 7.201 22 F -0.191 7.191 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.041 0.959 31 H 0.268 0.732 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 1.393 -9.694 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.203 4.203 4 C 0.310 3.690 5 O -0.398 6.398 6 O -0.248 6.248 7 C 0.021 3.979 8 C 0.026 3.974 9 C -0.547 4.547 10 H 0.085 0.915 11 C -0.133 4.133 12 N -0.523 5.523 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.046 4.046 18 O -0.319 6.319 19 C -0.035 4.035 20 C 0.230 3.770 21 F -0.182 7.182 22 F -0.172 7.172 23 H 0.106 0.894 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.676 0.851 -9.769 11.331 hybrid contribution 0.843 0.816 0.292 1.209 sum -4.833 1.667 -9.477 10.768 Atomic orbital electron populations 1.21852 0.89651 1.03776 1.04626 1.21515 1.00005 0.98896 0.90556 1.21862 1.02446 0.91481 1.04470 1.22655 0.78655 0.82068 0.85659 1.90678 1.33298 1.28206 1.87572 1.86354 1.69651 1.54307 1.14517 1.23228 1.04097 0.90130 0.80463 1.20377 0.90816 0.95749 0.90444 1.20875 0.91472 0.97902 1.44447 0.91490 1.25017 0.97256 0.96789 0.94273 1.69720 1.06758 1.27931 1.47906 0.86517 0.78874 0.83837 0.78478 1.20473 1.20984 1.19557 1.23797 0.99071 0.83522 0.98218 1.89631 1.41193 1.28512 1.72535 1.23902 0.83302 0.98455 0.97876 1.21497 0.76316 0.97104 0.82061 1.92958 1.88410 1.83926 1.52892 1.93015 1.30075 1.97515 1.96563 0.89382 0.90430 0.91532 0.91257 0.90620 0.89441 0.86340 0.94107 0.92225 0.91471 0.91410 0.90822 0.91286 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.28 37.15 0.31 -1.28 16 2 C -0.11 -1.53 0.68 -155.66 -0.11 -1.64 16 3 C -0.15 -1.95 8.20 37.16 0.30 -1.65 16 4 C 0.47 8.92 6.46 36.00 0.23 9.16 16 5 O -0.51 -11.05 15.09 -18.75 -0.28 -11.33 16 6 O -0.33 -7.04 9.61 -39.26 -0.38 -7.42 16 7 C 0.09 2.20 4.77 37.16 0.18 2.38 16 8 C 0.03 0.63 0.83 -155.28 -0.13 0.50 16 9 C -0.51 -12.81 8.56 -34.44 -0.29 -13.10 16 10 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 11 C 0.07 1.78 5.22 -17.82 -0.09 1.69 16 12 N -0.89 -23.55 11.11 55.43 0.62 -22.94 16 13 Si 0.90 20.04 29.55 -169.99 -5.02 15.01 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 C 0.03 0.64 7.83 24.59 0.19 0.83 16 18 O -0.40 -8.84 12.60 -35.23 -0.44 -9.28 16 19 C 0.04 0.94 7.85 24.59 0.19 1.13 16 20 C 0.28 3.85 3.81 37.16 0.14 4.00 16 21 F -0.20 -2.51 16.22 2.25 0.04 -2.47 16 22 F -0.19 -3.15 15.81 2.25 0.04 -3.11 16 23 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.08 0.70 7.68 -51.93 -0.40 0.31 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.01 7.80 -51.93 -0.41 0.61 16 27 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.12 3.15 5.63 -51.93 -0.29 2.86 16 30 H 0.04 0.95 7.90 -51.93 -0.41 0.54 16 31 H 0.27 6.86 8.32 -40.82 -0.34 6.53 16 32 H 0.07 1.30 7.79 -51.93 -0.40 0.89 16 33 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.07 1.61 8.10 -51.93 -0.42 1.19 16 35 H 0.07 1.56 8.13 -51.93 -0.42 1.13 16 36 H 0.12 1.35 8.13 -51.93 -0.42 0.92 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -28.39 311.43 -4.63 -33.03 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.82 Total: 1.81 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.93 Total: 2.02 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.62 Total: -22.94 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.10 Total: -28.03 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.07 Total: -5.58 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.39 -4.63 -33.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526116932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.708 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds