Wall clock time and date at job start Mon Mar 30 2020 23:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47238 * 2 1 4 4 C 1.50692 * 109.47323 * 120.00638 * 2 1 3 5 5 O 1.20825 * 120.00078 * 123.79961 * 4 2 1 6 6 O 1.34229 * 120.00229 * 303.80253 * 4 2 1 7 7 C 1.45193 * 117.00451 * 175.03768 * 6 4 2 8 8 C 1.53007 * 109.47354 * 184.74161 * 7 6 4 9 9 C 1.50699 * 113.56458 * 284.55433 * 8 7 6 10 10 H 1.08000 * 120.00401 * 131.15401 * 9 8 7 11 11 C 1.37885 * 119.99711 * 311.15627 * 9 8 7 12 12 N 1.31515 * 119.99854 * 351.82695 * 11 9 8 13 13 Si 1.86793 * 119.99779 * 171.82707 * 11 9 8 14 14 H 1.48504 * 109.47432 * 89.99811 * 13 11 9 15 15 H 1.48495 * 109.47376 * 209.99815 * 13 11 9 16 16 H 1.48500 * 109.47585 * 330.00167 * 13 11 9 17 17 C 1.53365 * 114.56650 * 58.82560 * 8 7 6 18 18 O 1.43349 * 88.44629 * 86.60961 * 17 8 7 19 19 C 1.43351 * 88.32127 * 28.15078 * 18 17 8 20 20 C 1.53010 * 109.46879 * 240.00403 * 2 1 3 21 21 F 1.39899 * 109.46976 * 59.99975 * 20 2 1 22 22 F 1.39898 * 109.47248 * 179.97438 * 20 2 1 23 23 H 1.09001 * 109.46878 * 304.55783 * 1 2 3 24 24 H 1.08999 * 109.47237 * 64.55583 * 1 2 3 25 25 H 1.09004 * 109.47317 * 184.55606 * 1 2 3 26 26 H 1.08995 * 109.46847 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47104 * 300.00316 * 3 2 1 28 28 H 1.09004 * 109.46628 * 60.00683 * 3 2 1 29 29 H 1.08998 * 109.47669 * 64.74158 * 7 6 4 30 30 H 1.09004 * 109.46959 * 304.73991 * 7 6 4 31 31 H 0.97002 * 119.99567 * 185.02212 * 12 11 9 32 32 H 1.09003 * 113.39526 * 331.71374 * 17 8 7 33 33 H 1.08995 * 113.39261 * 201.50796 * 17 8 7 34 34 H 1.08996 * 113.39019 * 86.74856 * 19 18 17 35 35 H 1.08997 * 113.39147 * 216.90337 * 19 18 17 36 36 H 1.08996 * 109.46954 * 300.00168 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7825 -1.6513 1.1207 6 8 1.6463 -0.2983 2.4480 7 6 2.0792 -1.0954 3.5818 8 6 1.4502 -0.5440 4.8629 9 6 2.0932 0.7287 5.3504 10 1 1.4794 1.5768 5.6156 11 6 3.4655 0.8105 5.4578 12 7 4.2033 -0.2653 5.2910 13 14 4.2763 2.4493 5.8401 14 1 4.4003 2.6090 7.3113 15 1 5.6260 2.4898 5.2223 16 1 3.4472 3.5520 5.2908 17 6 -0.0834 -0.5241 4.8629 18 8 -0.0621 -1.8745 5.3432 19 6 1.2035 -1.5925 5.9546 20 6 2.0399 -0.7212 -1.2494 21 9 1.5735 -0.0616 -2.3916 22 9 3.4389 -0.7208 -1.2498 23 1 -0.3633 0.5829 0.8464 24 1 -0.3634 0.4415 -0.9280 25 1 -0.3634 -1.0244 0.0816 26 1 3.1299 1.4424 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1653 -1.0525 3.6627 30 1 1.7661 -2.1298 3.4393 31 1 5.1613 -0.2239 5.4380 32 1 -0.5149 -0.4259 3.8667 33 1 -0.5070 0.1825 5.5765 34 1 1.1158 -1.1649 6.9534 35 1 1.8992 -2.4307 5.9158 36 1 1.6765 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526116932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:38 Heat of formation + Delta-G solvation = -221.889266 kcal Electronic energy + Delta-G solvation = -23208.963821 eV Core-core repulsion = 19329.775447 eV Total energy + Delta-G solvation = -3879.188374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.08164 -48.03345 -41.91580 -41.17187 -37.59652 -36.54064 -35.09006 -31.72786 -28.51558 -27.71824 -27.38626 -26.91948 -26.36948 -24.30988 -21.03221 -20.52527 -19.03271 -18.87897 -18.35640 -18.03848 -17.58397 -17.41297 -16.91608 -16.67164 -16.18776 -16.03327 -15.77249 -15.02690 -14.66191 -14.43386 -14.35853 -14.19550 -13.93523 -13.65814 -13.35379 -13.24748 -13.20352 -13.10732 -12.89495 -12.82581 -12.40347 -12.37665 -12.34684 -11.76903 -11.59938 -11.39511 -11.11110 -10.91581 -10.49073 -10.42963 -8.16739 -6.30892 1.09357 1.41249 1.45957 1.51975 1.54178 2.39195 2.56431 3.04117 3.07428 3.27718 3.33680 3.39924 3.71944 3.99616 4.07037 4.16192 4.20130 4.39396 4.59154 4.62271 4.63697 4.69474 4.71843 4.77647 4.87651 4.96138 5.10783 5.19055 5.25317 5.34123 5.45290 5.62132 5.78872 6.16633 6.67564 6.71194 7.37429 8.85310 Molecular weight = 278.12amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.006386 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.940293 B = 4383.216151 C = 5142.943156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.145 4.145 4 C 0.462 3.538 5 O -0.540 6.540 6 O -0.336 6.336 7 C 0.104 3.896 8 C 0.009 3.991 9 C -0.516 4.516 10 H 0.071 0.929 11 C 0.026 3.974 12 N -0.912 5.912 13 Si 0.950 3.050 14 H -0.273 1.273 15 H -0.292 1.292 16 H -0.263 1.263 17 C 0.041 3.959 18 O -0.404 6.404 19 C 0.045 3.955 20 C 0.283 3.717 21 F -0.190 7.190 22 F -0.211 7.211 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 2.636 -10.554 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.202 4.202 4 C 0.306 3.694 5 O -0.431 6.431 6 O -0.251 6.251 7 C 0.031 3.969 8 C 0.009 3.991 9 C -0.554 4.554 10 H 0.089 0.911 11 C -0.174 4.174 12 N -0.551 5.551 13 Si 0.776 3.224 14 H -0.198 1.198 15 H -0.218 1.218 16 H -0.187 1.187 17 C -0.036 4.036 18 O -0.324 6.324 19 C -0.032 4.032 20 C 0.230 3.770 21 F -0.171 7.171 22 F -0.192 7.192 23 H 0.106 0.894 24 H 0.125 0.875 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.275 2.107 -10.634 13.056 hybrid contribution 1.320 0.411 0.512 1.474 sum -5.955 2.517 -10.122 12.011 Atomic orbital electron populations 1.21924 0.86796 1.04650 1.06170 1.21651 1.02120 0.98536 0.88038 1.21903 1.01326 0.91158 1.05816 1.23709 0.77769 0.81775 0.86141 1.90661 1.34707 1.29864 1.87868 1.86360 1.69721 1.54095 1.14908 1.22829 1.02091 0.90189 0.81827 1.20482 0.92708 0.95492 0.90461 1.21139 0.91705 0.98580 1.43963 0.91134 1.25680 0.97935 0.99294 0.94489 1.69861 1.06641 1.29550 1.49020 0.85655 0.77581 0.80729 0.78430 1.19830 1.21775 1.18703 1.23820 0.97067 0.83091 0.99586 1.89623 1.40732 1.29404 1.72611 1.23833 0.83393 0.97915 0.98033 1.21671 0.75227 0.98146 0.82005 1.92977 1.88109 1.83869 1.52164 1.92979 1.31952 1.97624 1.96667 0.89444 0.87527 0.90813 0.93113 0.87591 0.89762 0.89655 0.94811 0.92618 0.89771 0.89835 0.90185 0.92204 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.28 71.98 0.60 -2.07 16 2 C -0.10 -2.71 0.68 -52.93 -0.04 -2.74 16 3 C -0.15 -3.63 8.20 71.98 0.59 -3.04 16 4 C 0.46 17.49 6.46 71.23 0.46 17.95 16 5 O -0.54 -23.82 15.09 21.97 0.33 -23.49 16 6 O -0.34 -14.11 9.61 -51.41 -0.49 -14.61 16 7 C 0.10 4.98 4.77 71.98 0.34 5.33 16 8 C 0.01 0.43 0.83 -52.68 -0.04 0.38 16 9 C -0.52 -25.64 8.56 25.60 0.22 -25.43 16 10 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 11 C 0.03 1.33 5.22 84.66 0.44 1.78 16 12 N -0.91 -49.44 11.11 21.45 0.24 -49.20 16 13 Si 0.95 40.88 29.55 68.60 2.03 42.90 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 17 C 0.04 1.62 7.83 63.84 0.50 2.12 16 18 O -0.40 -17.39 12.60 -148.98 -1.88 -19.27 16 19 C 0.05 2.03 7.85 63.84 0.50 2.53 16 20 C 0.28 7.15 3.81 71.99 0.27 7.43 16 21 F -0.19 -4.19 16.22 44.97 0.73 -3.47 16 22 F -0.21 -6.85 15.81 44.97 0.71 -6.14 16 23 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.11 1.47 7.68 -2.39 -0.02 1.45 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.45 7.80 -2.39 -0.02 1.43 16 27 H 0.11 2.00 7.80 -2.39 -0.02 1.99 16 28 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.09 4.70 5.63 -2.39 -0.01 4.69 16 30 H 0.03 1.62 7.90 -2.38 -0.02 1.60 16 31 H 0.26 13.89 8.32 -92.71 -0.77 13.11 16 32 H 0.08 3.05 7.79 -2.39 -0.02 3.03 16 33 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 34 H 0.08 3.44 8.10 -2.39 -0.02 3.42 16 35 H 0.06 2.74 8.13 -2.39 -0.02 2.72 16 36 H 0.14 2.88 8.13 -2.39 -0.02 2.86 16 Total: -1.00 -60.69 311.43 6.60 -54.09 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.08 Total: 14.94 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 3.85 Total: 4.24 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.24 Total: -49.20 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -2.04 Total: -57.37 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 1.44 Total: -9.60 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -60.69 6.60 -54.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526116932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.796 kcal (2) G-P(sol) polarization free energy of solvation -60.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds