Wall clock time and date at job start Tue Mar 31 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46704 * 60.00092 * 8 6 4 10 10 H 1.48494 * 109.47244 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46991 * 300.00416 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.26720 * 27.92738 * 15 14 12 17 17 C 1.54347 * 110.30023 * 150.00053 * 15 14 12 18 18 C 1.54340 * 102.39145 * 92.57083 * 17 15 14 19 19 C 1.51371 * 105.17326 * 26.35152 * 18 17 15 20 20 C 1.38471 * 130.36732 * 162.82439 * 19 18 17 21 21 C 1.38331 * 120.19452 * 179.97438 * 20 19 18 22 22 F 1.35092 * 120.05641 * 180.02562 * 21 20 19 23 23 C 1.38476 * 119.87826 * 0.02562 * 21 20 19 24 24 C 1.38067 * 119.91269 * 359.97438 * 23 21 20 25 25 C 1.38227 * 109.75743 * 342.80911 * 19 18 17 26 26 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 28 28 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 29 29 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 30 30 H 1.09002 * 110.82058 * 210.79342 * 17 15 14 31 31 H 1.08999 * 110.82081 * 334.14866 * 17 15 14 32 32 H 1.09004 * 110.30255 * 145.27603 * 18 17 15 33 33 H 1.09004 * 110.30549 * 267.42590 * 18 17 15 34 34 H 1.08001 * 119.90233 * 0.02562 * 20 19 18 35 35 H 1.07996 * 120.04251 * 179.97438 * 23 21 20 36 36 H 1.07991 * 119.87207 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.8277 -2.5197 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8072 -1.1189 -4.0079 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 1 3.1634 -1.4792 3.3264 17 6 2.4417 -0.0350 4.7863 18 6 1.1040 -0.1535 5.5469 19 6 0.5665 -1.5234 5.1921 20 6 -0.4103 -2.2899 5.8050 21 6 -0.7416 -3.5323 5.2950 22 9 -1.6954 -4.2776 5.8948 23 6 -0.0938 -4.0106 4.1684 24 6 0.8801 -3.2461 3.5575 25 6 1.2122 -2.0018 4.0674 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 0.7086 1.1614 -3.4844 30 1 3.2715 -0.3737 5.4068 31 1 2.6074 0.9867 4.4445 32 1 1.2720 -0.0798 6.6214 33 1 0.4117 0.6213 5.2175 34 1 -0.9156 -1.9163 6.6834 35 1 -0.3501 -4.9804 3.7682 36 1 1.3846 -3.6196 2.6787 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532266726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:31 Heat of formation + Delta-G solvation = -115.350970 kcal Electronic energy + Delta-G solvation = -21352.341601 eV Core-core repulsion = 17908.542299 eV Total energy + Delta-G solvation = -3443.799302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.96327 -40.52122 -39.01897 -36.14686 -34.50351 -33.89785 -31.32450 -30.52770 -28.88173 -26.92517 -25.21545 -23.36728 -22.96388 -21.25740 -20.81358 -19.77110 -17.26087 -16.84513 -16.73263 -16.17113 -16.04824 -15.66899 -15.29992 -14.72826 -14.53244 -14.35964 -13.93908 -13.57734 -12.98295 -12.86573 -12.49176 -12.45526 -12.17459 -11.90344 -11.52116 -11.42504 -11.05630 -10.94311 -10.86937 -10.80494 -10.71364 -10.37945 -10.08527 -10.06733 -9.19174 -9.07164 -8.98142 -8.55567 -8.44738 -6.11734 -4.17406 1.02468 1.17962 3.23293 3.28961 3.31689 3.34473 3.40380 3.74801 4.00691 4.37899 4.41807 4.46962 4.83520 4.93092 4.98770 5.14387 5.15290 5.21584 5.46298 5.59369 5.66711 5.76359 5.84702 5.92028 6.01328 6.05024 6.22285 6.26678 6.51677 6.65157 6.82984 6.85991 6.87495 7.20306 7.42159 7.72810 7.92844 8.12611 8.81635 8.91597 9.48147 10.95555 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.004541 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.203395 B = 6164.720369 C = 6685.856362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.516 6.516 14 O -0.350 6.350 15 C 0.119 3.881 16 H 0.093 0.907 17 C -0.115 4.115 18 C -0.080 4.080 19 C -0.053 4.053 20 C -0.151 4.151 21 C 0.103 3.897 22 F -0.141 7.141 23 C -0.158 4.158 24 C -0.055 4.055 25 C -0.123 4.123 26 H 0.030 0.970 27 H 0.023 0.977 28 H 0.096 0.904 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 -2.746 16.448 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.403 6.403 14 O -0.268 6.268 15 C 0.064 3.936 16 H 0.111 0.889 17 C -0.152 4.152 18 C -0.117 4.117 19 C -0.053 4.053 20 C -0.169 4.169 21 C 0.084 3.916 22 F -0.120 7.120 23 C -0.177 4.177 24 C -0.073 4.073 25 C -0.124 4.124 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.113 -2.961 16.318 16.622 hybrid contribution 0.074 -0.824 -0.746 1.114 sum -1.038 -3.785 15.572 16.059 Atomic orbital electron populations 1.21724 0.95611 1.00012 1.01680 1.18757 0.94818 0.96950 0.85539 0.91863 1.21082 1.31986 1.13258 0.88769 0.90706 1.24934 0.94885 0.95010 0.99113 1.69870 1.36411 1.22786 1.23969 0.86439 0.79283 0.79673 0.81372 1.20106 1.21206 1.20085 1.25414 0.76220 0.83277 0.84150 1.90475 1.36462 1.26808 1.86531 1.86775 1.70326 1.54767 1.14972 1.21861 0.95595 0.90555 0.85588 0.88946 1.22401 0.97307 1.01008 0.94509 1.21101 0.96803 0.93094 1.00701 1.20413 0.94105 0.95943 0.94870 1.20454 1.00381 0.93654 1.02447 1.17517 0.89621 0.90570 0.93866 1.91485 1.61706 1.75941 1.82826 1.21040 0.98582 1.01893 0.96180 1.20698 0.95216 0.92665 0.98733 1.20846 0.99719 0.95096 0.96707 0.95072 0.95843 0.88575 0.92631 0.89369 0.88753 0.90093 0.89037 0.84896 0.84466 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.90 37.16 0.33 -2.81 16 2 C 0.06 1.47 2.74 -92.92 -0.25 1.21 16 3 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.51 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.07 2.15 6.76 -52.49 -0.35 1.80 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 C 0.46 10.66 7.25 36.00 0.26 10.92 16 13 O -0.52 -12.63 14.67 -18.76 -0.28 -12.91 16 14 O -0.35 -6.81 9.83 -39.24 -0.39 -7.19 16 15 C 0.12 1.88 3.21 -26.85 -0.09 1.79 16 16 H 0.09 1.52 7.14 -51.93 -0.37 1.15 16 17 C -0.12 -1.30 6.81 -25.32 -0.17 -1.47 16 18 C -0.08 -0.84 6.77 -26.85 -0.18 -1.02 16 19 C -0.05 -0.69 6.14 -104.21 -0.64 -1.33 16 20 C -0.15 -1.85 10.02 -39.46 -0.40 -2.24 16 21 C 0.10 1.37 7.30 -39.46 -0.29 1.08 16 22 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 23 C -0.16 -2.13 10.03 -39.56 -0.40 -2.53 16 24 C -0.05 -0.84 10.04 -39.54 -0.40 -1.24 16 25 C -0.12 -1.88 5.82 -104.19 -0.61 -2.49 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.49 8.11 -51.92 -0.42 0.07 16 28 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -29.58 312.03 -7.92 -37.50 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.40 Total: 0.46 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.21 Total: -13.04 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.63 Total: -24.02 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.66 Total: -20.10 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.58 -7.92 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532266726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.852 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds