Wall clock time and date at job start Tue Mar 31 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46704 * 60.00092 * 8 6 4 10 10 H 1.48494 * 109.47244 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46991 * 300.00416 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.26720 * 27.92738 * 15 14 12 17 17 C 1.54347 * 110.30023 * 150.00053 * 15 14 12 18 18 C 1.54340 * 102.39145 * 92.57083 * 17 15 14 19 19 C 1.51371 * 105.17326 * 26.35152 * 18 17 15 20 20 C 1.38471 * 130.36732 * 162.82439 * 19 18 17 21 21 C 1.38331 * 120.19452 * 179.97438 * 20 19 18 22 22 F 1.35092 * 120.05641 * 180.02562 * 21 20 19 23 23 C 1.38476 * 119.87826 * 0.02562 * 21 20 19 24 24 C 1.38067 * 119.91269 * 359.97438 * 23 21 20 25 25 C 1.38227 * 109.75743 * 342.80911 * 19 18 17 26 26 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 28 28 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 29 29 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 30 30 H 1.09002 * 110.82058 * 210.79342 * 17 15 14 31 31 H 1.08999 * 110.82081 * 334.14866 * 17 15 14 32 32 H 1.09004 * 110.30255 * 145.27603 * 18 17 15 33 33 H 1.09004 * 110.30549 * 267.42590 * 18 17 15 34 34 H 1.08001 * 119.90233 * 0.02562 * 20 19 18 35 35 H 1.07996 * 120.04251 * 179.97438 * 23 21 20 36 36 H 1.07991 * 119.87207 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.8277 -2.5197 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8072 -1.1189 -4.0079 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 1 3.1634 -1.4792 3.3264 17 6 2.4417 -0.0350 4.7863 18 6 1.1040 -0.1535 5.5469 19 6 0.5665 -1.5234 5.1921 20 6 -0.4103 -2.2899 5.8050 21 6 -0.7416 -3.5323 5.2950 22 9 -1.6954 -4.2776 5.8948 23 6 -0.0938 -4.0106 4.1684 24 6 0.8801 -3.2461 3.5575 25 6 1.2122 -2.0018 4.0674 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 0.7086 1.1614 -3.4844 30 1 3.2715 -0.3737 5.4068 31 1 2.6074 0.9867 4.4445 32 1 1.2720 -0.0798 6.6214 33 1 0.4117 0.6213 5.2175 34 1 -0.9156 -1.9163 6.6834 35 1 -0.3501 -4.9804 3.7682 36 1 1.3846 -3.6196 2.6787 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532266726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:31 Heat of formation + Delta-G solvation = -129.350985 kcal Electronic energy + Delta-G solvation = -21352.948687 eV Core-core repulsion = 17908.542299 eV Total energy + Delta-G solvation = -3444.406388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.99666 -41.84972 -40.47487 -37.61523 -35.92436 -35.72598 -32.75116 -32.20226 -29.88112 -28.04992 -27.28641 -25.10516 -24.05524 -22.42071 -22.00344 -21.37126 -18.71616 -18.24745 -18.17902 -17.84143 -17.36075 -17.04287 -16.69857 -16.11414 -16.03928 -15.53997 -15.23704 -14.74821 -14.63673 -14.17410 -13.89102 -13.83737 -13.37127 -13.27982 -13.00457 -12.91442 -12.77166 -12.62863 -12.33339 -12.28064 -12.06050 -12.02756 -11.89717 -11.52745 -11.13219 -11.02092 -10.53771 -10.00564 -9.64534 -8.20406 -6.33597 -0.07204 0.14228 1.41789 1.42762 1.45654 1.51632 1.90334 2.41274 2.56409 2.98546 3.09678 3.32535 3.43951 3.82326 3.90977 3.96900 4.14346 4.19642 4.23933 4.59459 4.60784 4.66572 4.71333 4.81789 4.88683 4.96567 4.97976 5.01091 5.03954 5.17148 5.20599 5.39015 5.43990 5.53438 5.68954 5.79868 5.86963 6.09545 6.72420 7.05910 7.35132 8.85830 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.004541 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.203395 B = 6164.720369 C = 6685.856362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.472 3.528 13 O -0.539 6.539 14 O -0.347 6.347 15 C 0.107 3.893 16 H 0.076 0.924 17 C -0.107 4.107 18 C -0.075 4.075 19 C -0.048 4.048 20 C -0.143 4.143 21 C 0.100 3.900 22 F -0.139 7.139 23 C -0.162 4.162 24 C -0.075 4.075 25 C -0.151 4.151 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.268 0.732 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 -2.223 18.263 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.032 3.968 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.317 3.683 13 O -0.429 6.429 14 O -0.265 6.265 15 C 0.052 3.948 16 H 0.094 0.906 17 C -0.144 4.144 18 C -0.112 4.112 19 C -0.048 4.048 20 C -0.162 4.162 21 C 0.081 3.919 22 F -0.118 7.118 23 C -0.181 4.181 24 C -0.094 4.094 25 C -0.151 4.151 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.182 0.818 35 H 0.168 0.832 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.634 -2.423 18.155 18.389 hybrid contribution 0.216 -1.009 -1.213 1.592 sum -1.418 -3.432 16.942 17.344 Atomic orbital electron populations 1.21537 0.94644 0.99551 1.01865 1.18662 0.95635 0.96224 0.86310 0.93050 1.21211 1.32641 1.13280 0.90482 0.92585 1.25626 0.94886 0.95643 1.01521 1.69951 1.36569 1.23375 1.24794 0.85548 0.78768 0.78620 0.78352 1.20040 1.19856 1.19849 1.24832 0.75778 0.82617 0.85037 1.90457 1.37487 1.27716 1.87205 1.86699 1.70063 1.54964 1.14769 1.22367 0.95009 0.91964 0.85430 0.90581 1.22524 0.99099 1.00197 0.92593 1.21197 0.95862 0.91319 1.02795 1.20727 0.93469 0.96979 0.93656 1.20770 0.99684 0.92812 1.02921 1.17638 0.89508 0.91085 0.93691 1.91492 1.61580 1.76011 1.82689 1.21153 0.98134 1.02357 0.96455 1.20665 0.96316 0.93599 0.98801 1.20950 1.00763 0.95193 0.98217 0.95732 0.93514 0.90341 0.92252 0.86652 0.88077 0.86347 0.88549 0.81751 0.83168 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.90 71.98 0.64 -5.03 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 4 C -0.54 -30.65 8.37 25.60 0.21 -30.43 16 5 H 0.06 3.34 6.76 -2.91 -0.02 3.32 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -50.47 11.32 21.45 0.24 -50.22 16 8 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.47 22.25 7.25 71.23 0.52 22.76 16 13 O -0.54 -27.51 14.67 21.94 0.32 -27.19 16 14 O -0.35 -13.54 9.83 -51.35 -0.50 -14.05 16 15 C 0.11 3.32 3.21 30.52 0.10 3.42 16 16 H 0.08 2.58 7.14 -2.39 -0.02 2.56 16 17 C -0.11 -2.13 6.81 31.51 0.21 -1.91 16 18 C -0.08 -1.28 6.77 30.52 0.21 -1.08 16 19 C -0.05 -1.12 6.14 -19.60 -0.12 -1.24 16 20 C -0.14 -3.08 10.02 22.35 0.22 -2.86 16 21 C 0.10 2.46 7.30 22.35 0.16 2.62 16 22 F -0.14 -3.35 17.27 44.97 0.78 -2.58 16 23 C -0.16 -4.33 10.03 22.29 0.22 -4.10 16 24 C -0.08 -2.36 10.04 22.30 0.22 -2.14 16 25 C -0.15 -4.52 5.82 -19.59 -0.11 -4.64 16 26 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.96 8.11 -2.38 -0.02 1.94 16 28 H 0.08 4.05 6.07 -2.39 -0.01 4.04 16 29 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.91 8.11 -2.39 -0.02 1.89 16 32 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.12 3.98 8.06 -2.92 -0.02 3.96 16 Total: -1.00 -64.59 312.03 6.86 -57.73 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.09 Total: 10.69 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 2.91 Total: -20.31 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.24 Total: -50.22 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.18 Total: -41.24 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.59 6.86 -57.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532266726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.624 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds