Wall clock time and date at job start Tue Mar 31 2020 01:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47036 * 2 1 4 4 C 1.50692 * 109.47054 * 120.00767 * 2 1 3 5 5 H 1.08001 * 120.00114 * 116.69028 * 4 2 1 6 6 C 1.37875 * 120.00172 * 296.68958 * 4 2 1 7 7 N 1.31518 * 119.99742 * 352.71332 * 6 4 2 8 8 Si 1.86803 * 120.00533 * 172.71342 * 6 4 2 9 9 H 1.48496 * 109.46754 * 265.06993 * 8 6 4 10 10 H 1.48500 * 109.47362 * 145.06718 * 8 6 4 11 11 H 1.48497 * 109.46765 * 25.06370 * 8 6 4 12 12 C 1.50707 * 109.46941 * 240.00472 * 2 1 3 13 13 O 1.20823 * 120.00102 * 240.00028 * 12 2 1 14 14 O 1.34235 * 119.99725 * 59.99861 * 12 2 1 15 15 C 1.45195 * 116.99645 * 180.02562 * 14 12 2 16 16 H 1.09001 * 110.27184 * 29.29499 * 15 14 12 17 17 C 1.54342 * 110.30507 * 151.37636 * 15 14 12 18 18 C 1.54490 * 102.32989 * 145.21437 * 17 15 14 19 19 C 1.51375 * 105.21578 * 333.76659 * 18 17 15 20 20 C 1.38467 * 130.36773 * 197.12779 * 19 18 17 21 21 C 1.38322 * 120.19967 * 179.97438 * 20 19 18 22 22 F 1.35096 * 120.06211 * 179.97438 * 21 20 19 23 23 C 1.38474 * 119.87791 * 359.97438 * 21 20 19 24 24 C 1.38069 * 119.91105 * 359.97438 * 23 21 20 25 25 C 1.38232 * 109.75831 * 17.11622 * 19 18 17 26 26 H 1.08998 * 109.47195 * 177.81957 * 1 2 3 27 27 H 1.09000 * 109.46810 * 297.81673 * 1 2 3 28 28 H 1.08999 * 109.47030 * 57.81820 * 1 2 3 29 29 H 0.97007 * 119.99906 * 180.02562 * 7 6 4 30 30 H 1.08997 * 110.81895 * 263.50844 * 17 15 14 31 31 H 1.09005 * 110.81962 * 27.05144 * 17 15 14 32 32 H 1.08994 * 110.34314 * 214.79263 * 18 17 15 33 33 H 1.09006 * 110.30124 * 92.70996 * 18 17 15 34 34 H 1.08003 * 119.89586 * 0.02562 * 20 19 18 35 35 H 1.07999 * 120.04751 * 180.02562 * 23 21 20 36 36 H 1.07996 * 119.87227 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6084 -1.6188 1.1320 6 6 1.7565 -0.2012 2.4815 7 7 1.1813 0.9755 2.6002 8 14 2.1997 -1.1824 4.0080 9 1 1.0188 -1.9647 4.4537 10 1 2.6155 -0.2540 5.0899 11 1 3.3172 -2.1086 3.6939 12 6 2.0324 -0.7103 -1.2306 13 8 2.7270 -1.6927 -1.1199 14 8 1.7080 -0.2516 -2.4497 15 6 2.2266 -0.9860 -3.5898 16 1 2.3570 -2.0376 -3.3340 17 6 1.2758 -0.8423 -4.7970 18 6 2.2576 -0.8222 -5.9897 19 6 3.5591 -0.2954 -5.4240 20 6 4.6703 0.2251 -6.0656 21 6 5.7620 0.6512 -5.3307 22 9 6.8449 1.1581 -5.9596 23 6 5.7428 0.5573 -3.9493 24 6 4.6342 0.0393 -3.3098 25 6 3.5413 -0.3894 -4.0450 26 1 -0.3633 -1.0269 -0.0391 27 1 -0.3633 0.4796 0.9089 28 1 -0.3633 0.5473 -0.8698 29 1 0.9875 1.3341 3.4805 30 1 0.6013 -1.6960 -4.8627 31 1 0.7163 0.0915 -4.7405 32 1 1.8894 -0.1591 -6.7724 33 1 2.3962 -1.8296 -6.3824 34 1 4.6843 0.2993 -7.1430 35 1 6.5934 0.8896 -3.3728 36 1 4.6197 -0.0333 -2.2324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532266732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:34 Heat of formation + Delta-G solvation = -117.294830 kcal Electronic energy + Delta-G solvation = -21236.386220 eV Core-core repulsion = 17792.502626 eV Total energy + Delta-G solvation = -3443.883594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.95556 -40.53095 -39.05916 -36.12743 -34.67653 -33.88486 -31.28818 -30.58684 -28.90380 -26.93554 -25.20915 -23.28772 -23.03826 -21.27991 -20.85178 -19.80227 -17.25431 -16.95905 -16.55263 -16.37580 -16.00993 -15.67190 -15.50795 -14.67901 -14.61549 -14.36797 -13.66869 -13.52845 -13.01105 -12.75884 -12.55698 -12.44449 -12.18434 -11.96154 -11.81859 -11.65322 -11.07962 -10.98131 -10.94271 -10.82646 -10.69050 -10.40952 -10.10444 -10.06182 -9.16161 -9.08367 -8.99564 -8.51596 -8.46933 -6.15113 -4.17597 1.04283 1.16761 3.23305 3.28585 3.29957 3.35371 3.42555 3.67243 3.97075 4.38320 4.39796 4.43429 4.82690 4.90719 5.02465 5.03516 5.14256 5.20250 5.41606 5.49985 5.61607 5.72239 5.86566 5.88865 5.98152 6.04684 6.19127 6.26995 6.50060 6.59020 6.79772 6.80499 6.82342 7.17903 7.39031 7.63856 7.87763 8.08738 8.80280 8.91572 9.47330 10.94572 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.004448 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.723786 B = 6293.617919 C = 7030.386969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 H 0.068 0.932 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.463 3.537 13 O -0.514 6.514 14 O -0.353 6.353 15 C 0.121 3.879 16 H 0.098 0.902 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.065 4.065 20 C -0.147 4.147 21 C 0.099 3.901 22 F -0.141 7.141 23 C -0.153 4.153 24 C -0.056 4.056 25 C -0.116 4.116 26 H 0.032 0.968 27 H 0.083 0.917 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -0.904 -16.656 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.037 3.963 3 H 0.086 0.914 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.308 3.692 13 O -0.401 6.401 14 O -0.271 6.271 15 C 0.065 3.935 16 H 0.116 0.884 17 C -0.151 4.151 18 C -0.115 4.115 19 C -0.065 4.065 20 C -0.165 4.165 21 C 0.080 3.920 22 F -0.120 7.120 23 C -0.172 4.172 24 C -0.074 4.074 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.507 -1.066 -16.532 16.755 hybrid contribution 0.643 -0.423 0.781 1.096 sum 3.150 -1.489 -15.751 16.132 Atomic orbital electron populations 1.21666 0.95885 0.99633 1.01483 1.18769 0.94565 0.97332 0.85615 0.91432 1.21108 1.34756 1.10594 0.88770 0.90614 1.24932 0.95019 0.94773 0.99109 1.69950 1.42623 1.16238 1.24023 0.86415 0.78874 0.79868 0.81978 1.20538 1.21161 1.19622 1.25409 0.76557 0.83099 0.84180 1.90499 1.36353 1.26672 1.86552 1.86780 1.69763 1.55424 1.15110 1.22056 0.89300 0.96811 0.85314 0.88398 1.22457 0.97093 1.04350 0.91158 1.21075 0.90716 1.01665 0.98063 1.20260 0.95323 0.97075 0.93889 1.20424 0.92566 1.03191 1.00360 1.17492 0.84373 0.99452 0.90719 1.91485 1.52877 1.84967 1.82651 1.21059 1.00231 1.03331 0.92532 1.20632 0.91025 0.94857 1.00915 1.20876 0.96196 1.00329 0.94245 0.94851 0.89809 0.95405 0.92686 0.89421 0.89064 0.89748 0.89435 0.84902 0.84375 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.96 37.16 0.33 -2.61 16 2 C 0.06 1.40 2.63 -92.92 -0.24 1.15 16 3 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 4 C -0.51 -14.16 8.32 -34.45 -0.29 -14.45 16 5 H 0.08 2.18 6.77 -52.49 -0.36 1.82 16 6 C 0.06 1.73 5.21 -17.82 -0.09 1.64 16 7 N -0.89 -24.62 11.90 55.43 0.66 -23.96 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.46 10.49 7.05 36.01 0.25 10.75 16 13 O -0.51 -12.56 14.69 -18.75 -0.28 -12.83 16 14 O -0.35 -6.80 9.85 -39.27 -0.39 -7.19 16 15 C 0.12 1.89 3.18 -26.85 -0.09 1.81 16 16 H 0.10 1.62 7.19 -51.93 -0.37 1.25 16 17 C -0.11 -1.28 6.82 -25.25 -0.17 -1.45 16 18 C -0.08 -0.75 6.77 -26.77 -0.18 -0.93 16 19 C -0.07 -0.82 6.14 -104.21 -0.64 -1.46 16 20 C -0.15 -1.75 10.02 -39.47 -0.40 -2.14 16 21 C 0.10 1.30 7.30 -39.46 -0.29 1.01 16 22 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 23 C -0.15 -2.11 10.03 -39.56 -0.40 -2.51 16 24 C -0.06 -0.89 10.02 -39.54 -0.40 -1.29 16 25 C -0.12 -1.78 5.83 -104.19 -0.61 -2.38 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 2.07 6.58 -51.93 -0.34 1.72 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.13 2.35 7.86 -52.49 -0.41 1.93 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -29.54 312.66 -7.89 -37.43 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.42 Total: 0.30 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -3.20 Total: -12.86 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.66 Total: -23.96 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.66 Total: -20.02 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.54 -7.89 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532266732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.861 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds