Wall clock time and date at job start Tue Mar 31 2020 01:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47036 * 2 1 4 4 C 1.50692 * 109.47054 * 120.00767 * 2 1 3 5 5 H 1.08001 * 120.00114 * 116.69028 * 4 2 1 6 6 C 1.37875 * 120.00172 * 296.68958 * 4 2 1 7 7 N 1.31518 * 119.99742 * 352.71332 * 6 4 2 8 8 Si 1.86803 * 120.00533 * 172.71342 * 6 4 2 9 9 H 1.48496 * 109.46754 * 265.06993 * 8 6 4 10 10 H 1.48500 * 109.47362 * 145.06718 * 8 6 4 11 11 H 1.48497 * 109.46765 * 25.06370 * 8 6 4 12 12 C 1.50707 * 109.46941 * 240.00472 * 2 1 3 13 13 O 1.20823 * 120.00102 * 240.00028 * 12 2 1 14 14 O 1.34235 * 119.99725 * 59.99861 * 12 2 1 15 15 C 1.45195 * 116.99645 * 180.02562 * 14 12 2 16 16 H 1.09001 * 110.27184 * 29.29499 * 15 14 12 17 17 C 1.54342 * 110.30507 * 151.37636 * 15 14 12 18 18 C 1.54490 * 102.32989 * 145.21437 * 17 15 14 19 19 C 1.51375 * 105.21578 * 333.76659 * 18 17 15 20 20 C 1.38467 * 130.36773 * 197.12779 * 19 18 17 21 21 C 1.38322 * 120.19967 * 179.97438 * 20 19 18 22 22 F 1.35096 * 120.06211 * 179.97438 * 21 20 19 23 23 C 1.38474 * 119.87791 * 359.97438 * 21 20 19 24 24 C 1.38069 * 119.91105 * 359.97438 * 23 21 20 25 25 C 1.38232 * 109.75831 * 17.11622 * 19 18 17 26 26 H 1.08998 * 109.47195 * 177.81957 * 1 2 3 27 27 H 1.09000 * 109.46810 * 297.81673 * 1 2 3 28 28 H 1.08999 * 109.47030 * 57.81820 * 1 2 3 29 29 H 0.97007 * 119.99906 * 180.02562 * 7 6 4 30 30 H 1.08997 * 110.81895 * 263.50844 * 17 15 14 31 31 H 1.09005 * 110.81962 * 27.05144 * 17 15 14 32 32 H 1.08994 * 110.34314 * 214.79263 * 18 17 15 33 33 H 1.09006 * 110.30124 * 92.70996 * 18 17 15 34 34 H 1.08003 * 119.89586 * 0.02562 * 20 19 18 35 35 H 1.07999 * 120.04751 * 180.02562 * 23 21 20 36 36 H 1.07996 * 119.87227 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6084 -1.6188 1.1320 6 6 1.7565 -0.2012 2.4815 7 7 1.1813 0.9755 2.6002 8 14 2.1997 -1.1824 4.0080 9 1 1.0188 -1.9647 4.4537 10 1 2.6155 -0.2540 5.0899 11 1 3.3172 -2.1086 3.6939 12 6 2.0324 -0.7103 -1.2306 13 8 2.7270 -1.6927 -1.1199 14 8 1.7080 -0.2516 -2.4497 15 6 2.2266 -0.9860 -3.5898 16 1 2.3570 -2.0376 -3.3340 17 6 1.2758 -0.8423 -4.7970 18 6 2.2576 -0.8222 -5.9897 19 6 3.5591 -0.2954 -5.4240 20 6 4.6703 0.2251 -6.0656 21 6 5.7620 0.6512 -5.3307 22 9 6.8449 1.1581 -5.9596 23 6 5.7428 0.5573 -3.9493 24 6 4.6342 0.0393 -3.3098 25 6 3.5413 -0.3894 -4.0450 26 1 -0.3633 -1.0269 -0.0391 27 1 -0.3633 0.4796 0.9089 28 1 -0.3633 0.5473 -0.8698 29 1 0.9875 1.3341 3.4805 30 1 0.6013 -1.6960 -4.8627 31 1 0.7163 0.0915 -4.7405 32 1 1.8894 -0.1591 -6.7724 33 1 2.3962 -1.8296 -6.3824 34 1 4.6843 0.2993 -7.1430 35 1 6.5934 0.8896 -3.3728 36 1 4.6197 -0.0333 -2.2324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532266732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:33 Heat of formation + Delta-G solvation = -131.550272 kcal Electronic energy + Delta-G solvation = -21237.004383 eV Core-core repulsion = 17792.502626 eV Total energy + Delta-G solvation = -3444.501757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.99194 -41.85928 -40.50700 -37.60588 -35.90985 -35.86704 -32.80699 -32.16559 -29.90537 -28.06079 -27.25678 -25.05037 -24.08652 -22.43247 -21.99162 -21.43893 -18.70080 -18.31525 -18.11052 -17.78870 -17.51485 -17.17289 -16.68803 -16.27352 -15.94338 -15.58451 -15.04500 -14.74898 -14.55449 -14.13338 -13.95118 -13.59213 -13.49057 -13.38644 -13.03504 -12.96355 -12.82838 -12.76011 -12.58599 -12.33669 -12.07283 -12.05975 -11.83885 -11.49172 -11.15125 -10.96611 -10.55769 -10.02032 -9.59757 -8.24159 -6.33885 -0.04669 0.11967 1.40026 1.41502 1.43823 1.52867 1.90695 2.40797 2.49810 2.97697 3.08347 3.32325 3.40814 3.79789 3.89536 3.95840 4.10022 4.16507 4.21195 4.54099 4.59298 4.66798 4.68178 4.79338 4.86360 4.96212 4.97670 5.00859 5.03210 5.13611 5.21558 5.38271 5.41854 5.52055 5.67941 5.78456 5.80505 6.06501 6.72754 7.04783 7.34276 8.85124 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.004448 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.723786 B = 6293.617919 C = 7030.386969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.025 3.975 7 N -0.910 5.910 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.473 3.527 13 O -0.539 6.539 14 O -0.351 6.351 15 C 0.108 3.892 16 H 0.084 0.916 17 C -0.106 4.106 18 C -0.069 4.069 19 C -0.056 4.056 20 C -0.136 4.136 21 C 0.096 3.904 22 F -0.139 7.139 23 C -0.160 4.160 24 C -0.082 4.082 25 C -0.145 4.145 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.268 0.732 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.147 0.853 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -1.169 -19.042 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.029 3.971 3 H 0.065 0.935 4 C -0.576 4.576 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.428 6.428 14 O -0.268 6.268 15 C 0.053 3.947 16 H 0.102 0.898 17 C -0.143 4.143 18 C -0.106 4.106 19 C -0.056 4.056 20 C -0.154 4.154 21 C 0.077 3.923 22 F -0.118 7.118 23 C -0.178 4.178 24 C -0.100 4.100 25 C -0.146 4.146 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.187 0.813 35 H 0.165 0.835 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.841 -1.315 -18.939 19.074 hybrid contribution 0.903 -0.303 1.430 1.718 sum 2.743 -1.618 -17.509 17.797 Atomic orbital electron populations 1.21497 0.94256 0.99956 1.01637 1.18672 0.95930 0.96106 0.86346 0.93457 1.21222 1.35433 1.10410 0.90503 0.92608 1.25620 0.94797 0.95601 1.01542 1.70026 1.42835 1.17040 1.24890 0.85511 0.78656 0.78611 0.78720 1.19446 1.20117 1.20173 1.24806 0.75987 0.82395 0.85015 1.90476 1.37358 1.27782 1.87223 1.86704 1.69475 1.55679 1.14947 1.22585 0.91259 0.95635 0.85174 0.89849 1.22576 0.96954 1.05532 0.89281 1.21196 0.88069 1.03652 0.97641 1.20624 0.96716 0.95801 0.92468 1.20771 0.91348 1.01305 1.02022 1.17592 0.84930 0.99386 0.90395 1.91493 1.52902 1.84929 1.82432 1.21120 0.99928 1.03327 0.93448 1.20513 0.92710 0.97189 0.99633 1.21013 0.95863 1.01689 0.95990 0.94536 0.91747 0.92797 0.92269 0.87133 0.88817 0.86511 0.86955 0.81346 0.83500 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.96 71.98 0.64 -4.69 16 2 C 0.05 2.50 2.63 -12.28 -0.03 2.47 16 3 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 4 C -0.54 -30.66 8.32 25.60 0.21 -30.45 16 5 H 0.06 3.35 6.77 -2.91 -0.02 3.33 16 6 C 0.02 1.36 5.21 84.65 0.44 1.80 16 7 N -0.91 -50.99 11.90 21.45 0.26 -50.74 16 8 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.47 22.25 7.05 71.24 0.50 22.76 16 13 O -0.54 -27.63 14.69 21.97 0.32 -27.31 16 14 O -0.35 -13.74 9.85 -51.46 -0.51 -14.25 16 15 C 0.11 3.36 3.18 30.52 0.10 3.45 16 16 H 0.08 2.80 7.19 -2.39 -0.02 2.79 16 17 C -0.11 -2.08 6.82 31.56 0.22 -1.86 16 18 C -0.07 -1.01 6.77 30.57 0.21 -0.80 16 19 C -0.06 -1.25 6.14 -19.60 -0.12 -1.37 16 20 C -0.14 -2.80 10.02 22.34 0.22 -2.58 16 21 C 0.10 2.38 7.30 22.35 0.16 2.54 16 22 F -0.14 -3.35 17.27 44.97 0.78 -2.58 16 23 C -0.16 -4.47 10.03 22.29 0.22 -4.25 16 24 C -0.08 -2.73 10.02 22.30 0.22 -2.51 16 25 C -0.15 -4.41 5.83 -19.58 -0.11 -4.53 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 3.21 6.58 -2.39 -0.02 3.20 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 1.82 8.12 -2.38 -0.02 1.80 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.10 3.96 7.86 -2.91 -0.02 3.94 16 Total: -1.00 -65.94 312.66 6.85 -59.08 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.09 Total: 9.80 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 2.89 Total: -20.02 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.26 Total: -50.74 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.18 Total: -41.56 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.94 6.85 -59.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532266732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.466 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds