Wall clock time and date at job start Tue Mar 31 2020 00:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 C 1.50704 * 109.46974 * 239.99999 * 2 1 3 5 5 H 1.07997 * 120.00230 * 240.00029 * 4 2 1 6 6 C 1.37878 * 119.99804 * 60.00262 * 4 2 1 7 7 N 1.31519 * 120.00071 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47333 * 89.99726 * 8 6 4 10 10 H 1.48503 * 109.47315 * 209.99719 * 8 6 4 11 11 H 1.48495 * 109.47314 * 329.99468 * 8 6 4 12 12 C 1.53003 * 109.47298 * 120.00281 * 2 1 3 13 13 S 1.81402 * 109.46849 * 300.00009 * 12 2 1 14 14 O 1.42097 * 110.54358 * 68.37337 * 13 12 2 15 15 O 1.42102 * 110.54085 * 291.62353 * 13 12 2 16 16 N 1.65600 * 104.44764 * 179.97438 * 13 12 2 17 17 C 1.46502 * 119.99916 * 64.99729 * 16 13 12 18 18 H 1.09002 * 110.39056 * 335.70072 * 17 16 13 19 19 C 1.54638 * 110.43429 * 213.28683 * 17 16 13 20 20 N 1.49133 * 102.72979 * 219.02830 * 19 17 16 21 21 O 1.47723 * 103.96814 * 37.67907 * 20 19 17 22 22 C 1.43968 * 106.21169 * 319.72133 * 21 20 19 23 23 H 1.09006 * 109.46936 * 299.99965 * 1 2 3 24 24 H 1.09001 * 109.47583 * 59.99665 * 1 2 3 25 25 H 1.08998 * 109.47135 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47341 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47065 * 300.00653 * 3 2 1 28 28 H 1.09000 * 109.46687 * 60.00217 * 3 2 1 29 29 H 0.96995 * 119.99787 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47161 * 179.97438 * 12 2 1 31 31 H 1.09000 * 109.46697 * 59.99584 * 12 2 1 32 32 H 0.96997 * 120.00024 * 245.00137 * 16 13 12 33 33 H 1.08997 * 110.73279 * 337.34641 * 19 17 16 34 34 H 1.08997 * 110.73341 * 100.65547 * 19 17 16 35 35 H 1.00900 * 110.96502 * 157.07429 * 20 19 17 36 36 H 1.08999 * 110.07620 * 266.09237 * 22 21 20 37 37 H 1.08994 * 110.08158 * 144.53326 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6291 -1.7583 -3.7123 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1338 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0530 -0.7409 3.9936 17 6 3.5014 -0.7983 4.2059 18 1 4.0300 -0.6062 3.2721 19 6 3.9083 -2.1738 4.7835 20 7 4.9646 -1.8151 5.7733 21 8 4.4815 -0.5523 6.3684 22 6 3.9279 0.2168 5.2846 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 0.7081 1.1609 -3.4843 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2491 32 1 1.4558 -1.2153 4.5929 33 1 3.0617 -2.6507 5.2773 34 1 4.3124 -2.8166 4.0014 35 1 5.0596 -2.5330 6.4760 36 1 4.6815 0.8946 4.8836 37 1 3.0621 0.7814 5.6304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575297436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:01 Heat of formation + Delta-G solvation = -64.123548 kcal Electronic energy + Delta-G solvation = -21049.975944 eV Core-core repulsion = 17763.761942 eV Total energy + Delta-G solvation = -3286.214002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.06670 -36.63413 -36.34206 -35.42308 -34.75251 -31.87716 -31.71062 -28.82526 -26.73202 -25.76978 -25.27607 -24.18844 -21.77631 -19.79549 -18.92446 -17.77945 -17.43272 -16.14088 -16.01864 -15.63068 -15.30981 -15.19424 -14.78607 -14.27580 -13.94848 -13.23737 -13.11652 -12.95818 -12.56966 -12.54993 -12.33651 -12.16302 -11.57339 -11.52954 -11.15804 -11.11152 -11.01995 -10.84315 -10.75111 -10.44068 -10.33426 -10.16964 -9.81099 -9.70755 -9.42375 -9.17793 -8.74244 -8.44435 -6.07827 -4.20199 0.72287 2.76765 3.02010 3.22930 3.30616 3.32157 4.06452 4.16526 4.31566 4.37440 4.57260 4.67176 4.84064 5.03061 5.17584 5.22151 5.32651 5.58098 5.61892 5.69700 5.90148 6.28583 6.31191 6.42727 6.64067 6.73941 6.83875 6.88839 7.00073 7.26182 7.44839 7.63411 7.93311 8.04310 8.27722 8.78259 9.45625 10.93510 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.005222 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.690821 B = 5361.013856 C = 5868.603365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.581 4.581 13 S 2.590 3.410 14 O -0.961 6.961 15 O -0.959 6.959 16 N -1.123 6.123 17 C 0.131 3.869 18 H 0.111 0.889 19 C -0.006 4.006 20 N -0.481 5.481 21 O -0.248 6.248 22 C 0.034 3.966 23 H 0.027 0.973 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.413 0.587 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.353 0.647 36 H 0.080 0.920 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -5.756 12.705 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.715 4.715 13 S 2.688 3.312 14 O -0.951 6.951 15 O -0.949 6.949 16 N -0.879 5.879 17 C 0.022 3.978 18 H 0.129 0.871 19 C -0.138 4.138 20 N -0.150 5.150 21 O -0.257 6.257 22 C -0.046 4.046 23 H 0.046 0.954 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.246 0.754 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.168 0.832 36 H 0.098 0.902 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.718 -4.387 12.351 13.930 hybrid contribution -0.362 -1.716 -0.503 1.824 sum 4.356 -6.102 11.848 14.021 Atomic orbital electron populations 1.22280 0.96885 1.00651 1.02358 1.17942 0.92851 0.92256 0.88980 1.22279 0.99749 0.97736 1.02419 1.20926 1.31864 1.12121 0.89359 0.92293 1.24939 0.94862 0.94948 0.98959 1.69799 1.36208 1.22533 1.23552 0.86526 0.79165 0.79378 0.82507 1.20648 1.21100 1.19952 1.30533 1.11203 1.12952 1.16780 1.05832 0.74498 0.75335 0.75579 1.93566 1.29313 1.86599 1.85669 1.93562 1.78021 1.37883 1.85434 1.56132 1.12837 1.71063 1.47909 1.22097 0.81173 0.93812 1.00758 0.87145 1.24046 0.95460 0.97116 0.97156 1.69804 1.34712 0.98476 1.12008 1.91573 1.81666 1.24393 1.28044 1.23826 0.99225 0.93703 0.87838 0.95403 0.88592 0.94457 0.94411 0.88623 0.95290 0.92692 0.86456 0.86137 0.75376 0.91429 0.86516 0.83246 0.90153 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 7.77 37.16 0.29 -3.65 16 2 C 0.08 1.92 0.52 -155.66 -0.08 1.84 16 3 C -0.16 -3.91 7.78 37.16 0.29 -3.62 16 4 C -0.50 -12.83 8.01 -34.44 -0.28 -13.11 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 C -0.58 -10.57 4.91 37.16 0.18 -10.38 16 13 S 2.59 44.62 4.43 -107.50 -0.48 44.14 16 14 O -0.96 -19.20 15.70 -57.54 -0.90 -20.10 16 15 O -0.96 -18.84 15.44 -57.54 -0.89 -19.73 16 16 N -1.12 -13.81 5.34 -3.65 -0.02 -13.83 16 17 C 0.13 1.48 3.51 -66.47 -0.23 1.25 16 18 H 0.11 1.19 7.25 -51.93 -0.38 0.81 16 19 C -0.01 -0.05 7.57 -1.72 -0.01 -0.07 16 20 N -0.48 -4.73 8.55 -8.21 -0.07 -4.80 16 21 O -0.25 -3.10 12.64 -14.74 -0.19 -3.29 16 22 C 0.03 0.42 7.73 37.76 0.29 0.71 16 23 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 24 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.12 1.88 7.49 -51.93 -0.39 1.49 16 31 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 32 H 0.41 4.24 8.61 -34.47 -0.30 3.94 16 33 H 0.07 0.50 7.84 -51.93 -0.41 0.10 16 34 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.35 2.56 9.09 -39.29 -0.36 2.20 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.21 7.94 -51.93 -0.41 0.80 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -31.67 303.29 -7.21 -38.88 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.09 Total: 7.54 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 0.36 Total: -25.44 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.43 Total: -41.78 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.98 Total: -43.13 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 44.62 SS G_CDS: -0.48 Total: 44.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.67 -7.21 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.246 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds