Wall clock time and date at job start Tue Mar 31 2020 00:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47323 * 2 1 4 4 C 1.50704 * 109.46974 * 239.99999 * 2 1 3 5 5 H 1.07997 * 120.00230 * 240.00029 * 4 2 1 6 6 C 1.37878 * 119.99804 * 60.00262 * 4 2 1 7 7 N 1.31519 * 120.00071 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99833 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47333 * 89.99726 * 8 6 4 10 10 H 1.48503 * 109.47315 * 209.99719 * 8 6 4 11 11 H 1.48495 * 109.47314 * 329.99468 * 8 6 4 12 12 C 1.53003 * 109.47298 * 120.00281 * 2 1 3 13 13 S 1.81402 * 109.46849 * 300.00009 * 12 2 1 14 14 O 1.42097 * 110.54358 * 68.37337 * 13 12 2 15 15 O 1.42102 * 110.54085 * 291.62353 * 13 12 2 16 16 N 1.65600 * 104.44764 * 179.97438 * 13 12 2 17 17 C 1.46502 * 119.99916 * 64.99729 * 16 13 12 18 18 H 1.09002 * 110.39056 * 335.70072 * 17 16 13 19 19 C 1.54638 * 110.43429 * 213.28683 * 17 16 13 20 20 N 1.49133 * 102.72979 * 219.02830 * 19 17 16 21 21 O 1.47723 * 103.96814 * 37.67907 * 20 19 17 22 22 C 1.43968 * 106.21169 * 319.72133 * 21 20 19 23 23 H 1.09006 * 109.46936 * 299.99965 * 1 2 3 24 24 H 1.09001 * 109.47583 * 59.99665 * 1 2 3 25 25 H 1.08998 * 109.47135 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47341 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47065 * 300.00653 * 3 2 1 28 28 H 1.09000 * 109.46687 * 60.00217 * 3 2 1 29 29 H 0.96995 * 119.99787 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47161 * 179.97438 * 12 2 1 31 31 H 1.09000 * 109.46697 * 59.99584 * 12 2 1 32 32 H 0.96997 * 120.00024 * 245.00137 * 16 13 12 33 33 H 1.08997 * 110.73279 * 337.34641 * 19 17 16 34 34 H 1.08997 * 110.73341 * 100.65547 * 19 17 16 35 35 H 1.00900 * 110.96502 * 157.07429 * 20 19 17 36 36 H 1.08999 * 110.07620 * 266.09237 * 22 21 20 37 37 H 1.08994 * 110.08158 * 144.53326 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6291 -1.7583 -3.7123 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1338 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0530 -0.7409 3.9936 17 6 3.5014 -0.7983 4.2059 18 1 4.0300 -0.6062 3.2721 19 6 3.9083 -2.1738 4.7835 20 7 4.9646 -1.8151 5.7733 21 8 4.4815 -0.5523 6.3684 22 6 3.9279 0.2168 5.2846 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 0.7081 1.1609 -3.4843 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2491 32 1 1.4558 -1.2153 4.5929 33 1 3.0617 -2.6507 5.2773 34 1 4.3124 -2.8166 4.0014 35 1 5.0596 -2.5330 6.4760 36 1 4.6815 0.8946 4.8836 37 1 3.0621 0.7814 5.6304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575297436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:01 Heat of formation + Delta-G solvation = -89.629372 kcal Electronic energy + Delta-G solvation = -21051.081959 eV Core-core repulsion = 17763.761942 eV Total energy + Delta-G solvation = -3287.320017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.91885 -38.11820 -38.10524 -36.91342 -35.74347 -33.62119 -32.65941 -29.76557 -28.31818 -27.67364 -27.23201 -24.98934 -22.65234 -21.43180 -20.35083 -18.94769 -18.49984 -17.85838 -17.10277 -16.89061 -16.74680 -16.46107 -16.21483 -15.34058 -15.07835 -14.68092 -14.64643 -14.40940 -13.90686 -13.83032 -13.49194 -13.37039 -13.09563 -13.02778 -12.88112 -12.76062 -12.54048 -12.40583 -12.17024 -12.12358 -11.98011 -11.68354 -11.54135 -11.39488 -10.75232 -10.43451 -10.39554 -9.96108 -8.01673 -6.20133 -0.65588 1.45435 1.47914 1.55821 1.78309 1.99443 2.45515 2.81439 3.20915 3.29255 3.32950 3.49039 3.84237 3.89775 4.05074 4.14601 4.29121 4.41727 4.61947 4.68692 4.76906 4.86576 4.88621 4.96588 5.02587 5.10359 5.40941 5.48231 5.52371 5.66702 5.81003 5.99309 6.00079 6.13455 6.35512 6.85232 7.48525 8.98075 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.005222 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.690821 B = 5361.013856 C = 5868.603365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.161 4.161 4 C -0.515 4.515 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.266 1.266 12 C -0.584 4.584 13 S 2.611 3.389 14 O -0.991 6.991 15 O -0.986 6.986 16 N -1.104 6.104 17 C 0.122 3.878 18 H 0.118 0.882 19 C -0.001 4.001 20 N -0.482 5.482 21 O -0.271 6.271 22 C 0.029 3.971 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.425 0.575 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.367 0.633 36 H 0.077 0.923 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.829 -7.729 13.443 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 C -0.219 4.219 4 C -0.554 4.554 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.190 1.190 12 C -0.717 4.717 13 S 2.709 3.291 14 O -0.981 6.981 15 O -0.975 6.975 16 N -0.864 5.864 17 C 0.012 3.988 18 H 0.136 0.864 19 C -0.133 4.133 20 N -0.154 5.154 21 O -0.278 6.278 22 C -0.051 4.051 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.262 0.738 33 H 0.103 0.897 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.096 0.904 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.852 -6.369 13.107 15.704 hybrid contribution -0.684 -1.130 -0.660 1.476 sum 5.168 -7.499 12.447 15.423 Atomic orbital electron populations 1.22218 0.97888 1.00507 1.01272 1.17928 0.92246 0.92203 0.90996 1.22212 0.99961 0.98349 1.01334 1.21307 1.31569 1.12274 0.90282 0.91591 1.25671 0.95233 0.95615 1.01691 1.69949 1.37263 1.23743 1.23778 0.85629 0.78912 0.78197 0.79305 1.20504 1.21533 1.19010 1.30449 1.12801 1.13537 1.14925 1.04879 0.73520 0.74932 0.75782 1.93520 1.31377 1.86994 1.86204 1.93527 1.78316 1.39801 1.85900 1.55584 1.13792 1.70592 1.46420 1.22355 0.79994 0.95322 1.01096 0.86399 1.24152 0.95949 0.95739 0.97436 1.69805 1.35066 0.97958 1.12571 1.91553 1.81764 1.25850 1.28627 1.23803 0.98984 0.94066 0.88216 0.94940 0.91227 0.94040 0.93877 0.91312 0.94768 0.93023 0.84101 0.83993 0.73839 0.89724 0.84137 0.81633 0.90436 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.73 7.77 71.98 0.56 -7.17 16 2 C 0.07 3.14 0.52 -52.93 -0.03 3.11 16 3 C -0.16 -7.67 7.78 71.98 0.56 -7.11 16 4 C -0.52 -25.70 8.01 25.60 0.21 -25.49 16 5 H 0.07 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.89 5.15 84.65 0.44 1.33 16 7 N -0.91 -49.42 9.35 21.45 0.20 -49.22 16 8 Si 0.95 41.06 29.54 68.60 2.03 43.09 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 C -0.58 -19.89 4.91 71.98 0.35 -19.54 16 13 S 2.61 85.72 4.43 -56.49 -0.25 85.47 16 14 O -0.99 -38.45 15.70 -127.65 -2.00 -40.45 16 15 O -0.99 -37.77 15.44 -127.65 -1.97 -39.74 16 16 N -1.10 -24.31 5.34 -165.45 -0.88 -25.19 16 17 C 0.12 2.41 3.51 45.94 0.16 2.57 16 18 H 0.12 2.18 7.25 -2.39 -0.02 2.16 16 19 C 0.00 -0.02 7.57 86.43 0.65 0.63 16 20 N -0.48 -8.09 8.55 -179.90 -1.54 -9.63 16 21 O -0.27 -6.31 12.64 -53.96 -0.68 -6.99 16 22 C 0.03 0.68 7.73 72.37 0.56 1.23 16 23 H 0.03 1.48 5.46 -2.38 -0.01 1.47 16 24 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 25 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 28 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 29 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 30 H 0.14 4.08 7.49 -2.39 -0.02 4.06 16 31 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 32 H 0.43 7.52 8.61 -96.75 -0.83 6.69 16 33 H 0.08 0.91 7.84 -2.39 -0.02 0.89 16 34 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.37 4.25 9.09 -89.69 -0.82 3.43 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 2.15 7.94 -2.39 -0.02 2.14 16 Total: -1.00 -67.51 303.29 -2.19 -69.69 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.55 Total: 23.42 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 3.46 Total: -50.44 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.22 Total: -84.05 kcal Atomic # 8 Polarization: -82.53 SS G_CDS: -4.66 Total: -87.19 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 85.72 SS G_CDS: -0.25 Total: 85.47 kcal Total: -67.51 -2.19 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.938 kcal (2) G-P(sol) polarization free energy of solvation -67.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds