Wall clock time and date at job start Tue Mar 31 2020 00:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99328 * 2 1 4 4 N 1.46500 * 109.46868 * 125.00470 * 3 2 1 5 5 C 1.46504 * 120.00064 * 262.10661 * 4 3 2 6 6 C 1.50700 * 109.46632 * 269.99507 * 5 4 3 7 7 H 1.08006 * 120.00464 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99950 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99922 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99792 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46900 * 90.00809 * 10 8 6 12 12 H 1.48505 * 109.46718 * 210.00264 * 10 8 6 13 13 H 1.48496 * 109.47649 * 330.00463 * 10 8 6 14 14 C 1.34777 * 120.00029 * 82.09916 * 4 3 2 15 15 O 1.21620 * 119.99890 * 181.30858 * 14 4 3 16 16 C 1.47321 * 120.00365 * 1.31308 * 14 4 3 17 17 C 1.37937 * 125.89575 * 170.36916 * 16 14 4 18 18 C 1.39425 * 107.47672 * 179.71929 * 17 16 14 19 19 C 1.37996 * 107.45016 * 0.42127 * 18 17 16 20 20 C 1.47140 * 125.91192 * 179.84140 * 19 18 17 21 21 O 1.21529 * 120.00268 * 359.69217 * 20 19 18 22 22 O 1.34817 * 120.00039 * 179.69094 * 20 19 18 23 23 N 1.36719 * 125.88732 * 350.34711 * 16 14 4 24 24 H 0.96997 * 125.66080 * 359.97438 * 23 16 14 25 25 H 1.08001 * 120.00566 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99850 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00188 * 180.02562 * 2 1 3 28 28 H 1.08991 * 109.47400 * 5.00437 * 3 2 1 29 29 H 1.09005 * 109.46847 * 244.99793 * 3 2 1 30 30 H 1.08999 * 109.47137 * 29.99154 * 5 4 3 31 31 H 1.09000 * 109.47301 * 150.00316 * 5 4 3 32 32 H 0.97000 * 120.00125 * 180.02562 * 9 8 6 33 33 H 1.08007 * 126.25697 * 359.96006 * 17 16 14 34 34 H 1.08002 * 126.27499 * 180.25708 * 18 17 16 35 35 H 0.96701 * 117.00364 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6206 2.0189 2.3704 6 6 3.0615 3.4582 2.2991 7 1 3.5685 3.8248 1.4187 8 6 2.8167 4.3075 3.3574 9 7 2.1990 3.8614 4.4291 10 14 3.3627 6.0918 3.2686 11 1 2.2747 6.9135 2.6801 12 1 3.6705 6.5837 4.6355 13 1 4.5766 6.1964 2.4197 14 6 4.1927 0.7246 1.0324 15 8 4.9554 0.7264 1.9798 16 6 4.5797 0.0585 -0.2234 17 6 5.8326 -0.4333 -0.5252 18 6 5.7683 -0.9874 -1.8030 19 6 4.4789 -0.8159 -2.2640 20 6 3.9658 -1.2487 -3.5733 21 8 4.7036 -1.8082 -4.3604 22 8 2.6770 -1.0247 -3.8998 23 7 3.7588 -0.1791 -1.2905 24 1 2.8213 0.0630 -1.3477 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.5389 1.9762 2.4980 31 1 3.1059 1.5319 3.2162 32 1 2.0264 4.4590 5.1735 33 1 6.7031 -0.3992 0.1133 34 1 6.5795 -1.4613 -2.3356 35 1 2.3860 -1.3268 -4.7711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:13 Heat of formation + Delta-G solvation = -33.893139 kcal Electronic energy + Delta-G solvation = -21451.909217 eV Core-core repulsion = 18031.562153 eV Total energy + Delta-G solvation = -3420.347064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72938 -39.95637 -38.54375 -36.37429 -36.18004 -33.47116 -32.28268 -31.22072 -30.02994 -27.67154 -26.10495 -24.58996 -23.10564 -21.21369 -20.95775 -19.95485 -19.50042 -18.41166 -17.63973 -16.65549 -16.57588 -15.99094 -15.56908 -15.16405 -14.67608 -14.51464 -14.15228 -13.86418 -13.60314 -13.11540 -12.97182 -12.74271 -12.52238 -12.25100 -11.90883 -11.83664 -11.46687 -11.27293 -11.05440 -10.99662 -10.70221 -10.28657 -9.79025 -9.57122 -9.38655 -9.10094 -8.51933 -8.43492 -7.91428 -6.13148 -4.18837 0.89393 2.04492 2.16544 2.63160 2.98906 3.09562 3.25430 3.32930 3.36850 3.61982 3.80679 4.37745 4.64692 4.89705 4.93930 5.05508 5.17752 5.20894 5.22399 5.34469 5.70803 5.81106 5.85816 6.09189 6.16893 6.44226 6.47720 6.57761 6.73664 6.90219 7.16136 7.25811 7.35376 7.63649 7.82113 8.09207 8.12171 8.68851 8.87443 9.46762 10.94977 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.004805 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.720878 B = 5825.880839 C = 6313.072276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.208 4.208 3 C 0.118 3.882 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.571 3.429 15 O -0.513 6.513 16 C 0.024 3.976 17 C -0.141 4.141 18 C -0.105 4.105 19 C -0.038 4.038 20 C 0.556 3.444 21 O -0.507 6.507 22 O -0.519 6.519 23 N -0.518 5.518 24 H 0.433 0.567 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -9.112 -14.485 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.227 4.227 3 C -0.007 4.007 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.571 4.571 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.357 3.643 15 O -0.388 6.388 16 C -0.096 4.096 17 C -0.166 4.166 18 C -0.131 4.131 19 C -0.152 4.152 20 C 0.400 3.600 21 O -0.395 6.395 22 O -0.332 6.332 23 N -0.126 5.126 24 H 0.285 0.715 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.952 -8.989 -13.606 16.424 hybrid contribution -0.462 0.873 -0.665 1.191 sum -2.415 -8.116 -14.271 16.594 Atomic orbital electron populations 1.23954 0.95519 1.02436 0.96863 1.23548 0.97162 0.98756 1.03260 1.20974 0.93612 0.96289 0.89827 1.48237 1.14183 1.52582 1.16654 1.19415 0.96231 0.91608 0.79876 1.21407 1.38648 0.94359 1.02698 0.92290 1.24923 0.94925 0.99076 0.94972 1.69923 1.41239 1.36000 1.05926 0.86473 0.79047 0.84273 0.77520 1.20617 1.20986 1.19785 1.17175 0.82521 0.79253 0.85356 1.90826 1.50682 1.60014 1.37308 1.21332 0.92157 1.06308 0.89838 1.21291 0.96453 1.02238 0.96595 1.21278 0.94245 1.02118 0.95474 1.19378 0.93860 1.11866 0.90060 1.19651 0.79447 0.75424 0.85436 1.90926 1.58119 1.40240 1.50212 1.84582 1.28753 1.77395 1.42442 1.43681 1.13424 1.43329 1.12176 0.71545 0.87660 0.88094 0.87274 0.87733 0.90952 0.94570 0.93308 0.92570 0.82307 0.82673 0.72380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 14.32 29.01 0.42 -1.22 16 2 C -0.21 -2.67 7.88 -36.02 -0.28 -2.95 16 3 C 0.12 1.80 5.41 -5.19 -0.03 1.77 16 4 N -0.59 -11.94 2.46 -177.74 -0.44 -12.38 16 5 C 0.25 6.19 5.14 -5.19 -0.03 6.16 16 6 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 7 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 10 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.57 11.88 7.59 -12.57 -0.10 11.78 16 15 O -0.51 -12.66 16.46 5.26 0.09 -12.57 16 16 C 0.02 0.40 6.62 -82.10 -0.54 -0.14 16 17 C -0.14 -2.10 10.62 -39.25 -0.42 -2.52 16 18 C -0.10 -1.38 10.60 -39.23 -0.42 -1.79 16 19 C -0.04 -0.50 7.07 -82.12 -0.58 -1.08 16 20 C 0.56 6.61 8.33 34.34 0.29 6.89 16 21 O -0.51 -7.07 17.66 -19.29 -0.34 -7.41 16 22 O -0.52 -4.42 13.44 -40.81 -0.55 -4.97 16 23 N -0.52 -7.12 4.42 -5.91 -0.03 -7.14 16 24 H 0.43 5.39 3.47 -40.82 -0.14 5.25 16 25 H 0.11 1.09 7.84 -52.49 -0.41 0.68 16 26 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.11 1.41 7.30 -52.49 -0.38 1.02 16 28 H 0.10 1.59 7.66 -51.93 -0.40 1.19 16 29 H 0.07 1.00 5.19 -51.93 -0.27 0.73 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.38 7.40 -51.93 -0.38 1.00 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 34 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.42 1.52 9.11 45.56 0.42 1.93 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -33.46 313.35 -5.74 -39.21 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -2.81 Total: 5.57 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.11 Total: 3.69 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.27 Total: -44.50 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.80 Total: -24.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.46 -5.74 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.316 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds