Wall clock time and date at job start Tue Mar 31 2020 00:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99328 * 2 1 4 4 N 1.46500 * 109.46868 * 125.00470 * 3 2 1 5 5 C 1.46504 * 120.00064 * 262.10661 * 4 3 2 6 6 C 1.50700 * 109.46632 * 269.99507 * 5 4 3 7 7 H 1.08006 * 120.00464 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99950 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99922 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99792 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46900 * 90.00809 * 10 8 6 12 12 H 1.48505 * 109.46718 * 210.00264 * 10 8 6 13 13 H 1.48496 * 109.47649 * 330.00463 * 10 8 6 14 14 C 1.34777 * 120.00029 * 82.09916 * 4 3 2 15 15 O 1.21620 * 119.99890 * 181.30858 * 14 4 3 16 16 C 1.47321 * 120.00365 * 1.31308 * 14 4 3 17 17 C 1.37937 * 125.89575 * 170.36916 * 16 14 4 18 18 C 1.39425 * 107.47672 * 179.71929 * 17 16 14 19 19 C 1.37996 * 107.45016 * 0.42127 * 18 17 16 20 20 C 1.47140 * 125.91192 * 179.84140 * 19 18 17 21 21 O 1.21529 * 120.00268 * 359.69217 * 20 19 18 22 22 O 1.34817 * 120.00039 * 179.69094 * 20 19 18 23 23 N 1.36719 * 125.88732 * 350.34711 * 16 14 4 24 24 H 0.96997 * 125.66080 * 359.97438 * 23 16 14 25 25 H 1.08001 * 120.00566 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99850 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00188 * 180.02562 * 2 1 3 28 28 H 1.08991 * 109.47400 * 5.00437 * 3 2 1 29 29 H 1.09005 * 109.46847 * 244.99793 * 3 2 1 30 30 H 1.08999 * 109.47137 * 29.99154 * 5 4 3 31 31 H 1.09000 * 109.47301 * 150.00316 * 5 4 3 32 32 H 0.97000 * 120.00125 * 180.02562 * 9 8 6 33 33 H 1.08007 * 126.25697 * 359.96006 * 17 16 14 34 34 H 1.08002 * 126.27499 * 180.25708 * 18 17 16 35 35 H 0.96701 * 117.00364 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6206 2.0189 2.3704 6 6 3.0615 3.4582 2.2991 7 1 3.5685 3.8248 1.4187 8 6 2.8167 4.3075 3.3574 9 7 2.1990 3.8614 4.4291 10 14 3.3627 6.0918 3.2686 11 1 2.2747 6.9135 2.6801 12 1 3.6705 6.5837 4.6355 13 1 4.5766 6.1964 2.4197 14 6 4.1927 0.7246 1.0324 15 8 4.9554 0.7264 1.9798 16 6 4.5797 0.0585 -0.2234 17 6 5.8326 -0.4333 -0.5252 18 6 5.7683 -0.9874 -1.8030 19 6 4.4789 -0.8159 -2.2640 20 6 3.9658 -1.2487 -3.5733 21 8 4.7036 -1.8082 -4.3604 22 8 2.6770 -1.0247 -3.8998 23 7 3.7588 -0.1791 -1.2905 24 1 2.8213 0.0630 -1.3477 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.5389 1.9762 2.4980 31 1 3.1059 1.5319 3.2162 32 1 2.0264 4.4590 5.1735 33 1 6.7031 -0.3992 0.1133 34 1 6.5795 -1.4613 -2.3356 35 1 2.3860 -1.3268 -4.7711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:12 Heat of formation + Delta-G solvation = -56.920286 kcal Electronic energy + Delta-G solvation = -21452.907749 eV Core-core repulsion = 18031.562153 eV Total energy + Delta-G solvation = -3421.345596 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.89881 -40.98549 -39.99727 -37.69139 -37.15978 -35.27002 -33.87767 -32.37328 -31.33156 -29.42563 -27.41054 -26.06356 -24.62448 -22.45415 -22.25174 -21.00171 -20.64017 -19.46732 -18.77435 -18.66609 -17.87750 -17.25371 -16.96769 -16.47374 -16.25734 -15.90966 -15.50067 -15.02602 -14.70196 -14.48445 -14.24451 -14.07175 -13.86139 -13.83040 -13.37113 -13.14997 -12.91140 -12.67441 -12.59918 -12.38881 -12.26249 -12.03005 -11.74136 -11.07739 -10.66888 -10.59303 -10.20044 -9.79705 -9.47012 -8.24571 -6.39274 -0.22949 0.94217 1.07438 1.37622 1.40741 1.50976 1.63782 1.96693 2.04804 2.15002 2.33689 2.40381 3.06056 3.39011 3.75120 3.91924 3.98939 4.07706 4.12567 4.33884 4.60454 4.72577 4.86833 4.89972 5.04701 5.16737 5.32621 5.40360 5.50130 5.52987 5.63193 5.65414 5.76306 6.00764 6.06676 6.48526 6.68379 6.88020 7.10721 7.32735 8.82889 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.004805 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.720878 B = 5825.880839 C = 6313.072276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.229 4.229 3 C 0.116 3.884 4 N -0.591 5.591 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.054 0.946 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.567 3.433 15 O -0.569 6.569 16 C -0.004 4.004 17 C -0.135 4.135 18 C -0.105 4.105 19 C -0.026 4.026 20 C 0.567 3.433 21 O -0.525 6.525 22 O -0.507 6.507 23 N -0.505 5.505 24 H 0.439 0.561 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.032 0.968 31 H 0.005 0.995 32 H 0.268 0.732 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 -9.228 -17.034 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.249 4.249 3 C -0.007 4.007 4 N -0.320 5.320 5 C 0.143 3.857 6 C -0.586 4.586 7 H 0.072 0.928 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.199 1.199 14 C 0.355 3.645 15 O -0.448 6.448 16 C -0.124 4.124 17 C -0.161 4.161 18 C -0.131 4.131 19 C -0.141 4.141 20 C 0.412 3.588 21 O -0.415 6.415 22 O -0.322 6.322 23 N -0.114 5.114 24 H 0.291 0.709 25 H 0.130 0.870 26 H 0.144 0.856 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.178 0.822 34 H 0.197 0.803 35 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -2.926 -9.114 -16.220 18.833 hybrid contribution -0.283 0.830 0.025 0.877 sum -3.209 -8.284 -16.195 18.471 Atomic orbital electron populations 1.24250 0.94795 1.04001 0.93156 1.23312 0.97718 0.97282 1.06552 1.21200 0.93061 0.97965 0.88487 1.48171 1.15268 1.51952 1.16625 1.18864 0.95109 0.90792 0.80932 1.21665 1.38679 0.95523 1.02714 0.92816 1.25793 0.94815 1.03520 0.94501 1.70034 1.42143 1.37621 1.06594 0.85430 0.78847 0.79074 0.77556 1.18770 1.20631 1.19906 1.17685 0.81845 0.78716 0.86239 1.90774 1.52234 1.62272 1.39563 1.20644 0.93390 1.08937 0.89408 1.21470 0.95893 1.01341 0.97395 1.21518 0.95056 1.01879 0.94620 1.19737 0.93873 1.10128 0.90351 1.19300 0.80230 0.74826 0.84454 1.90937 1.58978 1.41049 1.50526 1.84531 1.26616 1.76780 1.44315 1.43520 1.13467 1.43035 1.11420 0.70864 0.86966 0.85574 0.87226 0.87866 0.89356 0.95038 0.97722 0.92275 0.82152 0.80346 0.69543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 14.32 67.78 0.97 -1.43 16 2 C -0.23 -5.57 7.88 25.65 0.20 -5.37 16 3 C 0.12 3.50 5.41 85.63 0.46 3.96 16 4 N -0.59 -24.93 2.46 -834.50 -2.06 -26.99 16 5 C 0.26 13.85 5.14 85.63 0.44 14.29 16 6 C -0.55 -30.80 9.39 25.60 0.24 -30.56 16 7 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 8 C 0.01 0.75 5.46 84.66 0.46 1.21 16 9 N -0.92 -54.48 13.29 21.45 0.28 -54.20 16 10 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 11 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.57 24.59 7.59 86.63 0.66 25.25 16 15 O -0.57 -29.87 16.46 -4.09 -0.07 -29.94 16 16 C 0.00 -0.15 6.62 40.70 0.27 0.12 16 17 C -0.14 -3.98 10.62 22.48 0.24 -3.74 16 18 C -0.11 -2.55 10.60 22.50 0.24 -2.31 16 19 C -0.03 -0.61 7.07 40.65 0.29 -0.33 16 20 C 0.57 11.65 8.33 70.16 0.58 12.24 16 21 O -0.53 -13.04 17.66 19.74 0.35 -12.69 16 22 O -0.51 -6.68 13.44 -57.29 -0.77 -7.45 16 23 N -0.51 -13.17 4.42 -172.61 -0.76 -13.93 16 24 H 0.44 10.14 3.47 -92.71 -0.32 9.82 16 25 H 0.11 2.03 7.84 -2.91 -0.02 2.00 16 26 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 27 H 0.11 2.68 7.30 -2.91 -0.02 2.66 16 28 H 0.10 3.10 7.66 -2.39 -0.02 3.09 16 29 H 0.09 2.35 5.19 -2.38 -0.01 2.33 16 30 H 0.03 1.65 8.07 -2.39 -0.02 1.64 16 31 H 0.00 0.28 7.40 -2.39 -0.02 0.27 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.16 4.57 8.06 -2.91 -0.02 4.55 16 34 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.44 1.34 9.11 -74.06 -0.67 0.66 16 Total: -1.00 -74.80 313.35 4.21 -70.59 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.15 Total: 15.29 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.05 Total: 13.34 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -2.53 Total: -95.11 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.49 Total: -50.09 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -74.80 4.21 -70.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.672 kcal (2) G-P(sol) polarization free energy of solvation -74.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds