Wall clock time and date at job start Tue Mar 31 2020 01:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47157 * 2 1 4 4 C 1.50700 * 109.46537 * 240.00148 * 2 1 3 5 5 H 1.08001 * 120.00071 * 239.99650 * 4 2 1 6 6 C 1.37882 * 119.99921 * 60.00404 * 4 2 1 7 7 N 1.31516 * 119.99904 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99999 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47011 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47365 * 119.99443 * 8 6 4 11 11 H 1.48495 * 109.47369 * 239.99893 * 8 6 4 12 12 N 1.46497 * 109.47181 * 120.00593 * 2 1 3 13 13 C 1.34779 * 119.99576 * 274.99312 * 12 2 1 14 14 O 1.21573 * 120.00115 * 359.73036 * 13 12 2 15 15 N 1.34782 * 119.99463 * 180.02562 * 13 12 2 16 16 C 1.39241 * 119.99340 * 175.48273 * 15 13 12 17 17 C 1.38852 * 120.17442 * 35.20964 * 16 15 13 18 18 C 1.38014 * 120.07821 * 180.02562 * 17 16 15 19 19 C 1.38592 * 120.41505 * 0.02562 * 18 17 16 20 20 C 1.37754 * 120.34300 * 359.97438 * 19 18 17 21 21 C 1.39765 * 119.91588 * 359.73086 * 20 19 18 22 22 C 1.47372 * 120.20932 * 180.27824 * 21 20 19 23 23 O 1.21508 * 119.99709 * 185.56086 * 22 21 20 24 24 O 1.34760 * 119.99847 * 5.55683 * 22 21 20 25 25 H 1.09004 * 109.47142 * 299.99724 * 1 2 3 26 26 H 1.09001 * 109.47723 * 59.99460 * 1 2 3 27 27 H 1.09000 * 109.47889 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99744 * 179.97438 * 7 6 4 29 29 H 0.96997 * 119.99970 * 94.99851 * 12 2 1 30 30 H 0.96993 * 120.00078 * 355.48366 * 15 13 12 31 31 H 1.07995 * 119.96362 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.79318 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.82736 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.04956 * 180.02562 * 20 19 18 35 35 H 0.96697 * 116.99550 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6990 -0.2392 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3221 -1.1194 -4.0081 9 1 3.1479 -2.2855 -3.6040 10 1 1.1673 -1.5864 -4.8166 11 1 3.1469 -0.1857 -4.8162 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8628 1.1624 2.4105 15 7 2.5969 -0.6537 3.4573 16 6 2.8195 0.0607 4.6316 17 6 1.9913 1.1225 4.9701 18 6 2.2140 1.8296 6.1343 19 6 3.2632 1.4879 6.9729 20 6 4.0955 0.4377 6.6538 21 6 3.8790 -0.2919 5.4815 22 6 4.7618 -1.4206 5.1369 23 8 4.6341 -1.9879 4.0700 24 8 5.7105 -1.8234 6.0050 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 0.7086 1.1616 -3.4843 29 1 2.2490 -1.6318 1.1524 30 1 2.7655 -1.6085 3.4311 31 1 1.1723 1.3959 4.3214 32 1 1.5667 2.6544 6.3933 33 1 3.4291 2.0480 7.8813 34 1 4.9114 0.1752 7.3110 35 1 6.2655 -2.5676 5.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:06 Heat of formation + Delta-G solvation = -88.935024 kcal Electronic energy + Delta-G solvation = -21204.120045 eV Core-core repulsion = 17781.386186 eV Total energy + Delta-G solvation = -3422.733859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89269 -39.60853 -38.24828 -36.28786 -35.12416 -34.14029 -32.41753 -31.40575 -29.91291 -28.24987 -25.25297 -24.63420 -23.21234 -21.59464 -20.91734 -19.82937 -18.24122 -18.11894 -17.64312 -17.03028 -16.00024 -15.73632 -15.19198 -15.16778 -14.70896 -14.41758 -14.08828 -13.82640 -13.38697 -13.16807 -12.73973 -12.39448 -12.09989 -11.76678 -11.70230 -11.54510 -11.09317 -11.00918 -10.78714 -10.68371 -10.30165 -10.23365 -10.10455 -9.43931 -9.05270 -9.03931 -8.56115 -8.20608 -7.78985 -6.12133 -4.20696 0.64086 1.36337 2.48483 2.90259 3.14527 3.24956 3.32982 3.37008 3.59240 3.97130 4.33635 4.72863 4.86654 4.96285 4.99601 5.20890 5.34185 5.40205 5.55524 5.88086 6.15277 6.24801 6.31168 6.44654 6.60569 6.79852 6.96635 7.04784 7.11648 7.24015 7.44838 7.63726 7.76436 7.83184 7.99726 8.15096 8.72973 8.83958 9.20748 9.47205 10.94103 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025314 B = 0.004288 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.848284 B = 6528.779428 C = 7406.657175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.279 3.721 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.714 5.714 13 C 0.693 3.307 14 O -0.583 6.583 15 N -0.684 5.684 16 C 0.255 3.745 17 C -0.139 4.139 18 C -0.060 4.060 19 C -0.166 4.166 20 C -0.043 4.043 21 C -0.181 4.181 22 C 0.531 3.469 23 O -0.516 6.516 24 O -0.513 6.513 25 H 0.015 0.985 26 H 0.091 0.909 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.414 0.586 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -3.325 19.001 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.177 3.823 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.364 5.364 13 C 0.394 3.606 14 O -0.461 6.461 15 N -0.333 5.333 16 C 0.154 3.846 17 C -0.160 4.160 18 C -0.079 4.079 19 C -0.185 4.185 20 C -0.061 4.061 21 C -0.186 4.186 22 C 0.377 3.623 23 O -0.406 6.406 24 O -0.325 6.325 25 H 0.034 0.966 26 H 0.110 0.890 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.254 0.746 31 H 0.172 0.828 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 4.508 -2.007 18.527 19.173 hybrid contribution 0.951 -1.848 -1.115 2.358 sum 5.459 -3.855 17.412 18.650 Atomic orbital electron populations 1.22105 0.98416 0.99159 1.00957 1.18728 0.90905 0.93813 0.78859 0.93184 1.21256 1.32372 1.13277 0.90198 0.91958 1.24876 0.94809 0.94973 0.99029 1.69914 1.35936 1.22470 1.23796 0.86369 0.78590 0.79532 0.82466 1.19732 1.20857 1.20866 1.45878 1.67971 1.13560 1.08986 1.16156 0.78619 0.85379 0.80473 1.90857 1.56819 1.14144 1.84299 1.43099 1.68570 1.12703 1.08973 1.17524 0.90417 0.92069 0.84613 1.21472 1.00773 0.96367 0.97381 1.21353 0.96207 0.97631 0.92720 1.21031 0.97158 0.99134 1.01141 1.21171 0.97878 0.93161 0.93926 1.18788 0.98034 1.00727 1.01043 1.20775 0.78272 0.82276 0.80960 1.90812 1.69659 1.56007 1.24107 1.84555 1.46063 1.52867 1.49034 0.96575 0.89024 0.95456 0.92617 0.77886 0.74597 0.82833 0.85152 0.85400 0.84568 0.72899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.24 2.56 -69.08 -0.18 7.06 16 3 H 0.05 1.49 7.57 -51.93 -0.39 1.10 16 4 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.71 -15.65 5.07 -59.82 -0.30 -15.96 16 13 C 0.69 14.77 8.36 -86.91 -0.73 14.04 16 14 O -0.58 -14.07 13.44 5.30 0.07 -14.00 16 15 N -0.68 -11.89 4.57 -14.04 -0.06 -11.96 16 16 C 0.25 4.03 6.30 -83.48 -0.53 3.50 16 17 C -0.14 -2.10 8.68 -39.44 -0.34 -2.44 16 18 C -0.06 -0.69 10.03 -39.53 -0.40 -1.09 16 19 C -0.17 -1.64 10.02 -39.63 -0.40 -2.04 16 20 C -0.04 -0.46 9.61 -39.19 -0.38 -0.83 16 21 C -0.18 -2.43 5.89 -104.82 -0.62 -3.05 16 22 C 0.53 6.85 8.24 34.45 0.28 7.14 16 23 O -0.52 -7.98 14.76 -19.27 -0.28 -8.26 16 24 O -0.51 -4.63 12.70 -40.66 -0.52 -5.14 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 7.59 8.56 -40.82 -0.35 7.24 16 30 H 0.41 6.60 6.57 -40.82 -0.27 6.33 16 31 H 0.15 2.64 6.23 -52.49 -0.33 2.31 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.14 7.62 -52.48 -0.40 0.74 16 35 H 0.41 1.91 9.11 45.56 0.42 2.33 16 LS Contribution 305.89 15.07 4.61 4.61 Total: -1.00 -32.69 305.89 -7.08 -39.77 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -2.87 Total: 13.47 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -3.33 Total: 5.96 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.26 Total: -52.31 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.73 Total: -27.40 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.69 -7.08 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.166 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds