Wall clock time and date at job start Tue Mar 31 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47157 * 2 1 4 4 C 1.50700 * 109.46537 * 240.00148 * 2 1 3 5 5 H 1.08001 * 120.00071 * 239.99650 * 4 2 1 6 6 C 1.37882 * 119.99921 * 60.00404 * 4 2 1 7 7 N 1.31516 * 119.99904 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99999 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47011 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47365 * 119.99443 * 8 6 4 11 11 H 1.48495 * 109.47369 * 239.99893 * 8 6 4 12 12 N 1.46497 * 109.47181 * 120.00593 * 2 1 3 13 13 C 1.34779 * 119.99576 * 274.99312 * 12 2 1 14 14 O 1.21573 * 120.00115 * 359.73036 * 13 12 2 15 15 N 1.34782 * 119.99463 * 180.02562 * 13 12 2 16 16 C 1.39241 * 119.99340 * 175.48273 * 15 13 12 17 17 C 1.38852 * 120.17442 * 35.20964 * 16 15 13 18 18 C 1.38014 * 120.07821 * 180.02562 * 17 16 15 19 19 C 1.38592 * 120.41505 * 0.02562 * 18 17 16 20 20 C 1.37754 * 120.34300 * 359.97438 * 19 18 17 21 21 C 1.39765 * 119.91588 * 359.73086 * 20 19 18 22 22 C 1.47372 * 120.20932 * 180.27824 * 21 20 19 23 23 O 1.21508 * 119.99709 * 185.56086 * 22 21 20 24 24 O 1.34760 * 119.99847 * 5.55683 * 22 21 20 25 25 H 1.09004 * 109.47142 * 299.99724 * 1 2 3 26 26 H 1.09001 * 109.47723 * 59.99460 * 1 2 3 27 27 H 1.09000 * 109.47889 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99744 * 179.97438 * 7 6 4 29 29 H 0.96997 * 119.99970 * 94.99851 * 12 2 1 30 30 H 0.96993 * 120.00078 * 355.48366 * 15 13 12 31 31 H 1.07995 * 119.96362 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.79318 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.82736 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.04956 * 180.02562 * 20 19 18 35 35 H 0.96697 * 116.99550 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6990 -0.2392 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3221 -1.1194 -4.0081 9 1 3.1479 -2.2855 -3.6040 10 1 1.1673 -1.5864 -4.8166 11 1 3.1469 -0.1857 -4.8162 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8628 1.1624 2.4105 15 7 2.5969 -0.6537 3.4573 16 6 2.8195 0.0607 4.6316 17 6 1.9913 1.1225 4.9701 18 6 2.2140 1.8296 6.1343 19 6 3.2632 1.4879 6.9729 20 6 4.0955 0.4377 6.6538 21 6 3.8790 -0.2919 5.4815 22 6 4.7618 -1.4206 5.1369 23 8 4.6341 -1.9879 4.0700 24 8 5.7105 -1.8234 6.0050 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 0.7086 1.1616 -3.4843 29 1 2.2490 -1.6318 1.1524 30 1 2.7655 -1.6085 3.4311 31 1 1.1723 1.3959 4.3214 32 1 1.5667 2.6544 6.3933 33 1 3.4291 2.0480 7.8813 34 1 4.9114 0.1752 7.3110 35 1 6.2655 -2.5676 5.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:05 Heat of formation + Delta-G solvation = -112.633090 kcal Electronic energy + Delta-G solvation = -21205.147670 eV Core-core repulsion = 17781.386186 eV Total energy + Delta-G solvation = -3423.761484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.07041 -40.90049 -39.41217 -37.25874 -36.88228 -35.62042 -34.36859 -32.38967 -31.43143 -29.82034 -27.36002 -25.63994 -24.49230 -22.99199 -22.13548 -21.59402 -19.83002 -19.11797 -18.82669 -18.12238 -17.84448 -17.00777 -16.73562 -16.46330 -16.16802 -15.67097 -15.38351 -15.17077 -14.94955 -14.42972 -14.19128 -13.86181 -13.70908 -13.03771 -12.99942 -12.91601 -12.75558 -12.61639 -12.52808 -12.30094 -12.13456 -11.78656 -11.40385 -11.12093 -11.02723 -10.62858 -10.05984 -9.91464 -9.13790 -8.19905 -6.37017 -0.35137 0.36085 1.43331 1.43731 1.50985 1.56056 1.70372 2.04118 2.11853 2.40459 2.82554 3.10490 3.34974 3.78091 4.07098 4.13954 4.36593 4.43672 4.58729 4.71703 4.90822 4.96295 5.06129 5.13007 5.28680 5.37486 5.46341 5.49926 5.54948 5.60121 5.62736 5.81023 5.96062 6.06570 6.19316 6.69619 6.94463 7.11334 7.30845 7.57485 8.86967 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025314 B = 0.004288 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.848284 B = 6528.779428 C = 7406.657175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.287 3.713 3 H 0.002 0.998 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.975 3.025 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.282 1.282 12 N -0.713 5.713 13 C 0.693 3.307 14 O -0.618 6.618 15 N -0.673 5.673 16 C 0.213 3.787 17 C -0.164 4.164 18 C -0.055 4.055 19 C -0.147 4.147 20 C -0.033 4.033 21 C -0.188 4.188 22 C 0.535 3.465 23 O -0.549 6.549 24 O -0.496 6.496 25 H 0.014 0.986 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.267 0.733 29 H 0.401 0.599 30 H 0.419 0.581 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 -4.125 21.125 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.208 1.208 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.499 6.499 15 N -0.323 5.323 16 C 0.115 3.885 17 C -0.185 4.185 18 C -0.074 4.074 19 C -0.165 4.165 20 C -0.051 4.051 21 C -0.192 4.192 22 C 0.382 3.618 23 O -0.442 6.442 24 O -0.310 6.310 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.235 0.765 30 H 0.261 0.739 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.189 0.811 34 H 0.187 0.813 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 6.162 -2.849 20.735 21.819 hybrid contribution 0.523 -1.535 -1.548 2.242 sum 6.685 -4.384 19.187 20.786 Atomic orbital electron populations 1.21910 0.97943 0.99512 0.99794 1.18329 0.91209 0.91683 0.80404 0.98028 1.21535 1.32758 1.13615 0.90802 0.91262 1.25775 0.94799 0.95591 1.02173 1.70051 1.36811 1.23780 1.24678 0.85260 0.78146 0.78417 0.78272 1.18763 1.20076 1.20785 1.45534 1.68536 1.13981 1.08454 1.16232 0.78374 0.84956 0.81062 1.90828 1.58266 1.15754 1.85013 1.42781 1.68091 1.12894 1.08564 1.17832 0.92499 0.93355 0.84812 1.21367 1.00664 0.97596 0.98871 1.21683 0.96973 0.97437 0.91297 1.21528 0.95157 0.98228 1.01614 1.21615 0.98372 0.92316 0.92821 1.18978 0.97439 1.01334 1.01465 1.20729 0.78524 0.81833 0.80710 1.90799 1.70699 1.57089 1.25631 1.84491 1.45222 1.53673 1.47608 0.96669 0.91127 0.94159 0.92393 0.76478 0.73941 0.86057 0.82595 0.81067 0.81331 0.70444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.24 16 2 C 0.29 15.57 2.56 44.25 0.11 15.68 16 3 H 0.00 0.11 7.57 -2.39 -0.02 0.10 16 4 C -0.55 -30.19 8.73 25.60 0.22 -29.97 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.71 -32.59 5.07 -461.43 -2.34 -34.93 16 13 C 0.69 31.06 8.36 179.05 1.50 32.56 16 14 O -0.62 -31.74 13.44 -3.94 -0.05 -31.79 16 15 N -0.67 -24.33 4.57 -316.60 -1.45 -25.78 16 16 C 0.21 6.85 6.30 38.62 0.24 7.10 16 17 C -0.16 -5.07 8.68 22.36 0.19 -4.88 16 18 C -0.06 -1.16 10.03 22.30 0.22 -0.94 16 19 C -0.15 -2.28 10.02 22.24 0.22 -2.06 16 20 C -0.03 -0.58 9.61 22.52 0.22 -0.36 16 21 C -0.19 -4.76 5.89 -19.99 -0.12 -4.88 16 22 C 0.54 12.95 8.24 70.23 0.58 13.53 16 23 O -0.55 -16.76 14.76 19.81 0.29 -16.47 16 24 O -0.50 -7.38 12.70 -56.71 -0.72 -8.10 16 25 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.40 16.09 8.56 -92.71 -0.79 15.29 16 30 H 0.42 13.82 6.57 -92.71 -0.61 13.21 16 31 H 0.12 4.50 6.23 -2.91 -0.02 4.48 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.17 1.90 7.62 -2.91 -0.02 1.88 16 35 H 0.43 2.68 9.11 -74.06 -0.67 2.00 16 Total: -1.00 -74.16 305.89 1.61 -72.56 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.91 Total: 31.41 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 4.51 Total: 20.92 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.54 Total: -113.53 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -0.48 Total: -56.36 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -74.16 1.61 -72.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.076 kcal (2) G-P(sol) polarization free energy of solvation -74.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds