Wall clock time and date at job start Tue Mar 31 2020 01:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47441 * 2 1 4 4 C 1.50696 * 109.47334 * 120.00542 * 2 1 3 5 5 H 1.08001 * 120.00136 * 119.99541 * 4 2 1 6 6 C 1.37878 * 119.99726 * 299.99733 * 4 2 1 7 7 N 1.31511 * 120.00261 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47177 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.46995 * 299.99898 * 8 6 4 11 11 H 1.48500 * 109.47075 * 59.99758 * 8 6 4 12 12 N 1.46501 * 109.46899 * 240.00142 * 2 1 3 13 13 C 1.34775 * 120.00024 * 84.99828 * 12 2 1 14 14 O 1.21578 * 119.99816 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00592 * 179.97438 * 13 12 2 16 16 C 1.39239 * 120.00776 * 175.48598 * 15 13 12 17 17 C 1.38856 * 120.16839 * 35.22068 * 16 15 13 18 18 C 1.38001 * 120.07637 * 180.02562 * 17 16 15 19 19 C 1.38586 * 120.42299 * 359.97438 * 18 17 16 20 20 C 1.37769 * 120.33533 * 0.02562 * 19 18 17 21 21 C 1.39755 * 119.91766 * 359.71928 * 20 19 18 22 22 C 1.47365 * 120.20759 * 180.25592 * 21 20 19 23 23 O 1.21511 * 120.00005 * 185.57078 * 22 21 20 24 24 O 1.34755 * 119.99974 * 5.56569 * 22 21 20 25 25 H 1.08995 * 109.47441 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46613 * 299.99763 * 1 2 3 27 27 H 1.08998 * 109.47011 * 59.99363 * 1 2 3 28 28 H 0.96993 * 120.00296 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00657 * 265.00253 * 12 2 1 30 30 H 0.97008 * 119.99274 * 355.49262 * 15 13 12 31 31 H 1.08001 * 119.95957 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.79190 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.83391 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.04067 * 179.97438 * 20 19 18 35 35 H 0.96699 * 117.00066 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 1.8261 -0.4209 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8065 -1.1213 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1615 -2.4116 15 7 2.5966 -0.6533 -3.4576 16 6 2.6408 0.0152 -4.6782 17 6 2.9466 1.3689 -4.7218 18 6 2.9893 2.0297 -5.9326 19 6 2.7288 1.3506 -7.1122 20 6 2.4235 0.0073 -7.0890 21 6 2.3816 -0.6770 -5.8711 22 6 2.0613 -2.1150 -5.8394 23 8 1.9262 -2.6840 -4.7742 24 8 1.9181 -2.7991 -6.9915 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.7083 1.1606 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 2.8895 -1.5763 -3.3991 31 1 3.1505 1.9055 -3.8070 32 1 3.2273 3.0828 -5.9611 33 1 2.7644 1.8771 -8.0544 34 1 2.2208 -0.5171 -8.0111 35 1 1.7077 -3.7402 -6.9201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:08 Heat of formation + Delta-G solvation = -88.945104 kcal Electronic energy + Delta-G solvation = -21203.985037 eV Core-core repulsion = 17781.250741 eV Total energy + Delta-G solvation = -3422.734296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89769 -39.61328 -38.24995 -36.29709 -35.12276 -34.13982 -32.42023 -31.40870 -29.90978 -28.24664 -25.24707 -24.63896 -23.20541 -21.60888 -20.92180 -19.81173 -18.24844 -18.12182 -17.64857 -17.04874 -15.99315 -15.72884 -15.30194 -15.04679 -14.74797 -14.32401 -14.15411 -13.89188 -13.38286 -13.08575 -12.78297 -12.38197 -12.11749 -11.75033 -11.71366 -11.54180 -11.09843 -10.99243 -10.81518 -10.65431 -10.34279 -10.21933 -10.08920 -9.44252 -9.06171 -9.04196 -8.56212 -8.19869 -7.79365 -6.11917 -4.21067 0.63714 1.36250 2.47765 2.89413 3.14874 3.26776 3.31742 3.34185 3.59173 3.96811 4.33045 4.72580 4.86790 4.96215 4.99439 5.20591 5.34021 5.40141 5.55474 5.88020 6.15173 6.24761 6.30501 6.44777 6.60803 6.81509 6.99711 7.04958 7.13131 7.25043 7.45307 7.62852 7.75475 7.83683 7.99732 8.15420 8.72304 8.83629 9.20658 9.46803 10.94146 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027593 B = 0.004123 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.490942 B = 6789.820596 C = 7426.324018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.714 5.714 13 C 0.693 3.307 14 O -0.583 6.583 15 N -0.684 5.684 16 C 0.255 3.745 17 C -0.139 4.139 18 C -0.060 4.060 19 C -0.166 4.166 20 C -0.043 4.043 21 C -0.182 4.182 22 C 0.532 3.468 23 O -0.517 6.517 24 O -0.513 6.513 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.414 0.586 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -3.582 -19.265 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.364 5.364 13 C 0.394 3.606 14 O -0.461 6.461 15 N -0.333 5.333 16 C 0.154 3.846 17 C -0.160 4.160 18 C -0.079 4.079 19 C -0.185 4.185 20 C -0.062 4.062 21 C -0.186 4.186 22 C 0.378 3.622 23 O -0.407 6.407 24 O -0.325 6.325 25 H 0.045 0.955 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.254 0.746 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.660 -2.175 -18.704 19.183 hybrid contribution 0.280 -2.050 0.927 2.267 sum 3.940 -4.225 -17.777 18.692 Atomic orbital electron populations 1.22105 0.98476 0.99194 1.00921 1.18713 0.90936 0.93739 0.78776 0.93160 1.21173 1.32599 1.13305 0.90226 0.92080 1.24871 0.94791 0.94960 0.99000 1.69890 1.35728 1.22427 1.24024 0.86482 0.79140 0.79588 0.81718 1.21109 1.20165 1.20172 1.45883 1.67983 1.13477 1.09052 1.16154 0.78651 0.85392 0.80437 1.90858 1.57196 1.14030 1.84049 1.43097 1.66614 1.17467 1.06155 1.17525 0.91587 0.91967 0.83546 1.21491 1.01433 0.93132 0.99936 1.21353 0.94710 1.00060 0.91775 1.21034 1.04486 0.94355 0.98591 1.21169 0.94513 0.94311 0.96161 1.18781 1.15078 0.90391 0.94383 1.20774 0.72724 0.87676 0.81071 1.90809 1.48038 1.70516 1.31303 1.84555 1.83281 1.28888 1.35784 0.95462 0.89046 0.96586 0.92486 0.77890 0.74587 0.82769 0.85143 0.85399 0.84576 0.72905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 2 C 0.28 7.28 2.56 -69.08 -0.18 7.10 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.71 -15.66 5.07 -59.82 -0.30 -15.96 16 13 C 0.69 14.77 8.37 -86.92 -0.73 14.04 16 14 O -0.58 -14.07 13.44 5.30 0.07 -13.99 16 15 N -0.68 -11.90 4.56 -14.04 -0.06 -11.96 16 16 C 0.25 4.03 6.30 -83.48 -0.53 3.50 16 17 C -0.14 -2.11 8.68 -39.44 -0.34 -2.45 16 18 C -0.06 -0.69 10.03 -39.54 -0.40 -1.09 16 19 C -0.17 -1.64 10.02 -39.62 -0.40 -2.03 16 20 C -0.04 -0.46 9.61 -39.19 -0.38 -0.83 16 21 C -0.18 -2.43 5.89 -104.83 -0.62 -3.04 16 22 C 0.53 6.79 8.24 34.44 0.28 7.07 16 23 O -0.52 -7.89 14.76 -19.27 -0.28 -8.18 16 24 O -0.51 -4.56 12.69 -40.64 -0.52 -5.08 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.39 7.59 8.56 -40.82 -0.35 7.24 16 30 H 0.41 6.61 6.57 -40.82 -0.27 6.34 16 31 H 0.15 2.67 6.22 -52.49 -0.33 2.34 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.13 7.62 -52.49 -0.40 0.73 16 35 H 0.41 1.85 9.11 45.56 0.42 2.27 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -32.51 305.88 -7.08 -39.59 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -2.87 Total: 13.67 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -3.33 Total: 5.89 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.26 Total: -52.26 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.73 Total: -27.25 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.51 -7.08 -39.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.358 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds