Wall clock time and date at job start Tue Mar 31 2020 01:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47441 * 2 1 4 4 C 1.50696 * 109.47334 * 120.00542 * 2 1 3 5 5 H 1.08001 * 120.00136 * 119.99541 * 4 2 1 6 6 C 1.37878 * 119.99726 * 299.99733 * 4 2 1 7 7 N 1.31511 * 120.00261 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47177 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.46995 * 299.99898 * 8 6 4 11 11 H 1.48500 * 109.47075 * 59.99758 * 8 6 4 12 12 N 1.46501 * 109.46899 * 240.00142 * 2 1 3 13 13 C 1.34775 * 120.00024 * 84.99828 * 12 2 1 14 14 O 1.21578 * 119.99816 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00592 * 179.97438 * 13 12 2 16 16 C 1.39239 * 120.00776 * 175.48598 * 15 13 12 17 17 C 1.38856 * 120.16839 * 35.22068 * 16 15 13 18 18 C 1.38001 * 120.07637 * 180.02562 * 17 16 15 19 19 C 1.38586 * 120.42299 * 359.97438 * 18 17 16 20 20 C 1.37769 * 120.33533 * 0.02562 * 19 18 17 21 21 C 1.39755 * 119.91766 * 359.71928 * 20 19 18 22 22 C 1.47365 * 120.20759 * 180.25592 * 21 20 19 23 23 O 1.21511 * 120.00005 * 185.57078 * 22 21 20 24 24 O 1.34755 * 119.99974 * 5.56569 * 22 21 20 25 25 H 1.08995 * 109.47441 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46613 * 299.99763 * 1 2 3 27 27 H 1.08998 * 109.47011 * 59.99363 * 1 2 3 28 28 H 0.96993 * 120.00296 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00657 * 265.00253 * 12 2 1 30 30 H 0.97008 * 119.99274 * 355.49262 * 15 13 12 31 31 H 1.08001 * 119.95957 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.79190 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.83391 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.04067 * 179.97438 * 20 19 18 35 35 H 0.96699 * 117.00066 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 1.8261 -0.4209 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8065 -1.1213 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1615 -2.4116 15 7 2.5966 -0.6533 -3.4576 16 6 2.6408 0.0152 -4.6782 17 6 2.9466 1.3689 -4.7218 18 6 2.9893 2.0297 -5.9326 19 6 2.7288 1.3506 -7.1122 20 6 2.4235 0.0073 -7.0890 21 6 2.3816 -0.6770 -5.8711 22 6 2.0613 -2.1150 -5.8394 23 8 1.9262 -2.6840 -4.7742 24 8 1.9181 -2.7991 -6.9915 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.7083 1.1606 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 2.8895 -1.5763 -3.3991 31 1 3.1505 1.9055 -3.8070 32 1 3.2273 3.0828 -5.9611 33 1 2.7644 1.8771 -8.0544 34 1 2.2208 -0.5171 -8.0111 35 1 1.7077 -3.7402 -6.9201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:08 Heat of formation + Delta-G solvation = -112.463757 kcal Electronic energy + Delta-G solvation = -21205.004883 eV Core-core repulsion = 17781.250741 eV Total energy + Delta-G solvation = -3423.754142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07087 -40.89976 -39.41339 -37.25696 -36.88227 -35.62058 -34.36547 -32.39194 -31.43302 -29.82651 -27.36043 -25.64010 -24.48452 -23.01506 -22.13381 -21.58095 -19.82856 -19.11624 -18.83506 -18.13683 -17.83520 -16.94663 -16.75556 -16.50891 -16.08836 -15.65195 -15.56559 -15.09219 -14.90617 -14.42401 -14.15804 -13.96480 -13.66344 -13.03456 -13.00806 -12.90078 -12.76183 -12.61134 -12.52699 -12.29697 -12.15467 -11.78413 -11.40199 -11.14406 -11.02431 -10.61736 -10.06329 -9.91115 -9.14258 -8.18828 -6.36464 -0.35196 0.35880 1.44377 1.47097 1.51044 1.54720 1.70699 2.04168 2.10906 2.41414 2.82357 3.11375 3.34916 3.78014 4.07003 4.13953 4.36460 4.43597 4.58776 4.70391 4.89321 4.96030 5.05179 5.13444 5.28511 5.36303 5.46369 5.49937 5.54899 5.60145 5.61938 5.80211 5.95952 6.05645 6.19256 6.69618 6.94698 7.11296 7.31322 7.57484 8.87666 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027593 B = 0.004123 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.490942 B = 6789.820596 C = 7426.324018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H 0.005 0.995 4 C -0.550 4.550 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.284 1.284 10 H -0.266 1.266 11 H -0.270 1.270 12 N -0.713 5.713 13 C 0.693 3.307 14 O -0.618 6.618 15 N -0.673 5.673 16 C 0.214 3.786 17 C -0.165 4.165 18 C -0.055 4.055 19 C -0.147 4.147 20 C -0.033 4.033 21 C -0.187 4.187 22 C 0.536 3.464 23 O -0.549 6.549 24 O -0.496 6.496 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.267 0.733 29 H 0.401 0.599 30 H 0.419 0.581 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -4.760 -21.696 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.799 3.201 9 H -0.209 1.209 10 H -0.191 1.191 11 H -0.195 1.195 12 N -0.365 5.365 13 C 0.394 3.606 14 O -0.499 6.499 15 N -0.323 5.323 16 C 0.115 3.885 17 C -0.186 4.186 18 C -0.074 4.074 19 C -0.165 4.165 20 C -0.051 4.051 21 C -0.192 4.192 22 C 0.382 3.618 23 O -0.442 6.442 24 O -0.310 6.310 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.235 0.765 30 H 0.261 0.739 31 H 0.138 0.862 32 H 0.173 0.827 33 H 0.189 0.811 34 H 0.187 0.813 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 4.197 -3.402 -21.226 21.903 hybrid contribution 0.132 -1.637 1.436 2.181 sum 4.328 -5.039 -19.790 20.876 Atomic orbital electron populations 1.21925 0.98413 0.99296 0.99623 1.18313 0.90914 0.91848 0.80419 0.97693 1.21476 1.32949 1.13715 0.90707 0.91044 1.25785 0.94772 0.95571 1.02203 1.70034 1.36704 1.23807 1.24809 0.85355 0.78638 0.78606 0.77460 1.20890 1.19054 1.19548 1.45535 1.68527 1.13895 1.08545 1.16234 0.78407 0.84975 0.81028 1.90829 1.58677 1.15598 1.84767 1.42779 1.66269 1.17462 1.05813 1.17827 0.94488 0.92627 0.83540 1.21371 1.03551 0.93278 1.00375 1.21675 0.93456 1.01299 0.90972 1.21530 1.01470 0.94072 0.99436 1.21618 0.92677 0.94736 0.96068 1.18970 1.14793 0.91045 0.94365 1.20710 0.72028 0.87629 0.81383 1.90796 1.49572 1.71135 1.32690 1.84490 1.82445 1.30548 1.33506 0.94457 0.91002 0.97092 0.92386 0.76466 0.73933 0.86158 0.82652 0.81057 0.81289 0.70427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.12 9.26 71.98 0.67 -6.45 16 2 C 0.29 15.64 2.56 44.24 0.11 15.76 16 3 H 0.01 0.32 7.58 -2.39 -0.02 0.31 16 4 C -0.55 -30.02 8.73 25.60 0.22 -29.80 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.98 42.62 29.54 68.60 2.03 44.64 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.71 -32.59 5.07 -461.43 -2.34 -34.93 16 13 C 0.69 31.08 8.37 179.06 1.50 32.58 16 14 O -0.62 -31.78 13.44 -3.96 -0.05 -31.84 16 15 N -0.67 -24.34 4.56 -316.61 -1.45 -25.79 16 16 C 0.21 6.86 6.30 38.62 0.24 7.10 16 17 C -0.16 -5.13 8.68 22.36 0.19 -4.94 16 18 C -0.06 -1.17 10.03 22.30 0.22 -0.95 16 19 C -0.15 -2.28 10.02 22.24 0.22 -2.05 16 20 C -0.03 -0.57 9.61 22.53 0.22 -0.35 16 21 C -0.19 -4.71 5.89 -20.00 -0.12 -4.83 16 22 C 0.54 12.76 8.24 70.22 0.58 13.34 16 23 O -0.55 -16.48 14.76 19.80 0.29 -16.18 16 24 O -0.50 -7.20 12.69 -56.66 -0.72 -7.92 16 25 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 4.10 6.07 -2.39 -0.01 4.09 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.40 16.07 8.56 -92.71 -0.79 15.27 16 30 H 0.42 13.83 6.57 -92.70 -0.61 13.22 16 31 H 0.12 4.53 6.22 -2.91 -0.02 4.51 16 32 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.17 1.87 7.62 -2.91 -0.02 1.85 16 35 H 0.43 2.50 9.11 -74.06 -0.67 1.83 16 Total: -1.00 -73.81 305.88 1.61 -72.20 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.91 Total: 31.83 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 4.51 Total: 20.79 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -3.54 Total: -113.52 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -0.48 Total: -55.94 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.81 1.61 -72.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.264 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds