Wall clock time and date at job start Tue Mar 31 2020 01:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47050 * 2 1 4 4 C 1.50703 * 109.46961 * 239.99902 * 2 1 3 5 5 H 1.07992 * 120.00372 * 274.93656 * 4 2 1 6 6 C 1.37882 * 119.99266 * 94.94046 * 4 2 1 7 7 N 1.31516 * 119.99543 * 184.89483 * 6 4 2 8 8 Si 1.86793 * 120.00327 * 4.89337 * 6 4 2 9 9 H 1.48507 * 109.47115 * 94.87721 * 8 6 4 10 10 H 1.48501 * 109.46968 * 214.87496 * 8 6 4 11 11 H 1.48496 * 109.47164 * 334.87526 * 8 6 4 12 12 N 1.46499 * 109.47202 * 120.00250 * 2 1 3 13 13 C 1.34775 * 119.99976 * 275.00236 * 12 2 1 14 14 O 1.21581 * 120.00001 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99661 * 179.97438 * 13 12 2 16 16 C 1.39987 * 119.99859 * 184.55310 * 15 13 12 17 17 C 1.38993 * 119.99553 * 144.60607 * 16 15 13 18 18 C 1.38218 * 120.23207 * 179.72674 * 17 16 15 19 19 C 1.38010 * 120.22676 * 0.55230 * 18 17 16 20 20 C 1.39619 * 119.99196 * 359.72554 * 19 18 17 21 21 C 1.47736 * 120.11977 * 180.02562 * 20 19 18 22 22 O 1.21471 * 120.00296 * 179.97438 * 21 20 19 23 23 O 1.34716 * 119.99977 * 359.97438 * 21 20 19 24 24 C 1.38580 * 119.99518 * 324.89026 * 16 15 13 25 25 H 1.09003 * 109.47442 * 175.01171 * 1 2 3 26 26 H 1.09002 * 109.47182 * 295.01070 * 1 2 3 27 27 H 1.09000 * 109.46983 * 55.00979 * 1 2 3 28 28 H 0.97002 * 120.00136 * 180.02562 * 7 6 4 29 29 H 0.96998 * 119.99942 * 94.99508 * 12 2 1 30 30 H 0.96999 * 120.00313 * 4.56054 * 15 13 12 31 31 H 1.07997 * 119.87978 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.88323 * 180.25791 * 18 17 16 33 33 H 1.07997 * 120.00284 * 179.70047 * 19 18 17 34 34 H 0.96696 * 116.99507 * 180.02562 * 23 21 20 35 35 H 1.07993 * 120.11346 * 359.96966 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1364 -1.7853 -1.2288 6 6 2.3590 0.0121 -2.3585 7 7 2.7050 -0.6132 -3.4625 8 14 2.3101 1.8790 -2.3186 9 1 3.6666 2.4034 -2.0183 10 1 1.8626 2.3907 -3.6388 11 1 1.3622 2.3269 -1.2669 12 7 2.0184 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8583 1.1614 2.4117 15 7 2.5958 -0.6539 3.4576 16 6 2.6394 0.0178 4.6850 17 6 2.3724 -0.6695 5.8632 18 6 2.4196 -0.0123 7.0782 19 6 2.7210 1.3335 7.1290 20 6 2.9852 2.0345 5.9508 21 6 3.3087 3.4751 6.0019 22 8 3.5387 4.0827 4.9755 23 8 3.3488 4.1148 7.1867 24 6 2.9430 1.3694 4.7246 25 1 -0.3634 -1.0238 -0.0894 26 1 -0.3634 0.4345 0.9313 27 1 -0.3633 0.5893 -0.8419 28 1 2.9353 -0.1050 -4.2560 29 1 2.2490 -1.6318 1.1525 30 1 2.8887 -1.5768 3.3992 31 1 2.1319 -1.7218 5.8295 32 1 2.2152 -0.5528 7.9906 33 1 2.7521 1.8445 8.0799 34 1 3.5645 5.0572 7.1696 35 1 3.1467 1.9060 3.8098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:12 Heat of formation + Delta-G solvation = -91.711870 kcal Electronic energy + Delta-G solvation = -20934.533361 eV Core-core repulsion = 17511.679089 eV Total energy + Delta-G solvation = -3422.854272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68487 -39.91242 -38.34236 -36.15493 -35.30361 -34.34321 -32.42438 -31.36170 -30.40641 -28.69373 -25.32905 -24.92094 -23.14602 -21.44274 -21.05928 -19.90924 -18.47273 -18.31091 -17.70626 -16.52650 -16.29950 -15.87684 -15.68940 -15.25077 -14.85484 -14.54863 -14.04143 -13.78237 -13.42478 -13.24944 -12.89338 -12.55454 -12.41933 -12.03325 -11.69895 -11.64107 -11.55444 -11.10040 -10.81905 -10.69960 -10.63034 -10.27014 -9.86356 -9.57738 -9.19818 -9.11948 -8.72932 -8.35747 -7.95323 -6.26107 -4.30189 0.59892 1.27760 2.46225 2.80122 3.07349 3.27446 3.35527 3.44247 3.52065 3.84836 4.31745 4.67031 4.72902 4.81493 5.03993 5.10675 5.17811 5.33970 5.50563 5.76595 6.15614 6.17835 6.25464 6.32321 6.38452 6.44278 6.51233 6.67017 6.84952 6.96427 7.07479 7.30233 7.44334 7.52873 7.81097 8.20682 8.60720 8.75207 9.05649 9.36076 10.85295 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.004414 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.209309 B = 6341.390885 C = 7223.624318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.243 3.757 3 H 0.055 0.945 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.871 3.129 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.255 1.255 12 N -0.712 5.712 13 C 0.690 3.310 14 O -0.583 6.583 15 N -0.695 5.695 16 C 0.168 3.832 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.112 4.112 21 C 0.525 3.475 22 O -0.503 6.503 23 O -0.515 6.515 24 C -0.058 4.058 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.268 0.732 29 H 0.391 0.609 30 H 0.407 0.593 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.412 0.588 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 0.456 22.040 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.140 3.860 3 H 0.073 0.927 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.524 5.524 8 Si 0.697 3.303 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.179 1.179 12 N -0.363 5.363 13 C 0.390 3.610 14 O -0.461 6.461 15 N -0.343 5.343 16 C 0.072 3.928 17 C -0.139 4.139 18 C -0.134 4.134 19 C -0.108 4.108 20 C -0.114 4.114 21 C 0.369 3.631 22 O -0.392 6.392 23 O -0.327 6.327 24 C -0.079 4.079 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.224 0.776 30 H 0.242 0.758 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.271 0.729 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.370 1.287 21.428 21.470 hybrid contribution 0.390 0.592 -0.251 0.752 sum 0.759 1.879 21.177 21.274 Atomic orbital electron populations 1.22226 0.98613 1.00506 0.99298 1.19184 0.90821 0.94447 0.81512 0.92691 1.20995 1.45422 0.95612 0.94823 0.90330 1.24931 0.93468 0.98717 0.95121 1.69883 1.44524 1.36238 1.01707 0.86912 0.79673 0.85764 0.77906 1.19943 1.20972 1.17928 1.46024 1.68189 1.13637 1.08481 1.16290 0.78627 0.85553 0.80519 1.90898 1.57172 1.14034 1.83960 1.42827 1.68595 1.16455 1.06432 1.17359 0.98598 0.91871 0.84967 1.21192 1.00420 1.00813 0.91473 1.20868 1.00895 0.94221 0.97424 1.21337 0.97612 0.94327 0.97503 1.18862 1.08078 0.89838 0.94611 1.20916 0.73368 0.88198 0.80661 1.90944 1.45142 1.67966 1.35115 1.84539 1.83484 1.29963 1.34735 1.21572 0.94417 0.93709 0.98163 0.93475 0.95177 0.92870 0.92195 0.77590 0.75783 0.85069 0.84931 0.84664 0.72921 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.47 37.16 0.35 -2.88 16 2 C 0.24 5.75 2.20 -69.08 -0.15 5.60 16 3 H 0.06 1.44 4.50 -51.93 -0.23 1.21 16 4 C -0.53 -14.09 9.05 -34.44 -0.31 -14.40 16 5 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -25.97 13.96 55.43 0.77 -25.19 16 8 Si 0.87 21.63 27.31 -169.99 -4.64 16.99 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.26 -6.31 6.36 56.52 0.36 -5.95 16 12 N -0.71 -14.01 5.07 -59.82 -0.30 -14.32 16 13 C 0.69 13.30 8.37 -86.92 -0.73 12.57 16 14 O -0.58 -13.56 13.44 5.29 0.07 -13.49 16 15 N -0.69 -9.91 5.34 -14.25 -0.08 -9.98 16 16 C 0.17 2.34 6.29 -83.73 -0.53 1.81 16 17 C -0.12 -1.20 9.96 -39.31 -0.39 -1.59 16 18 C -0.12 -1.04 10.02 -39.67 -0.40 -1.44 16 19 C -0.09 -0.92 9.61 -39.15 -0.38 -1.29 16 20 C -0.11 -1.53 5.87 -105.01 -0.62 -2.15 16 21 C 0.52 7.25 8.27 34.61 0.29 7.54 16 22 O -0.50 -8.92 17.13 -19.24 -0.33 -9.25 16 23 O -0.52 -4.85 12.68 -40.54 -0.51 -5.37 16 24 C -0.06 -0.93 8.24 -38.96 -0.32 -1.25 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 6.57 8.61 -40.82 -0.35 6.21 16 30 H 0.41 4.25 8.84 -40.82 -0.36 3.89 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.10 7.60 -52.49 -0.40 0.70 16 34 H 0.41 2.05 9.11 45.56 0.42 2.46 16 35 H 0.16 3.15 5.81 -52.49 -0.31 2.85 16 LS Contribution 309.71 15.07 4.67 4.67 Total: -1.00 -35.00 309.71 -6.58 -41.58 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -2.95 Total: 9.64 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.28 Total: 4.71 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.39 Total: -49.49 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.77 Total: -28.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.64 Total: 16.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.00 -6.58 -41.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.128 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds